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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179298 (6 seq.)
>A171001559
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
172642
172567
-
Ala
GGC
-
¡û
>A171002515
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
1143006
1142931
-
Ala
GGC
-
¡û
>At1050
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
492159
492232
+
Ala
GGC
[Ensembl]
¡û
>At1144
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
1049964
1049891
-
Ala
GGC
[Ensembl]
¡û
>W1610000311
AAWI01000001
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
4161
4237
+
Ala
GGC
[ENA]
¡û
>W1610000603
ABHB01000001
Euryarchaeota
Methanococcus voltae A3 [ABHB]
1202169
1202094
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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