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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179313 (26 seq.)
>A171000678
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
115135
115211
+
Ala
TGC
-
¡û
>A171001870
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
813977
814053
+
Ala
TGC
-
¡û
>A171002302
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
1483746
1483822
+
Ala
TGC
-
¡û
>A171002678
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1347854
1347778
-
Ala
TGC
-
¡û
>A171003772
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
764714
764790
+
Ala
TGC
-
¡û
>A171003786
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
1527314
1527238
-
Ala
TGC
-
¡û
>A171003896
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
774214
774138
-
Ala
TGC
-
¡û
>A171004060
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
965132
965056
-
Ala
TGC
-
¡û
>A171004472
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
175278
175202
-
Ala
TGC
-
¡û
>A171006339
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
38363
38439
+
Ala
TGC
-
¡û
>A171006470
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
945292
945368
+
Ala
TGC
-
¡û
>WENV170676717
LDZS01002035
[LDZS] terrestrial metagenome; oil reservoir sample K3
41491
41415
-
Ala
TGC
[ENA]
¢þ
>W1910597255
LANF01000002
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
1787
1863
+
Ala
TGC
[ENA]
¡û
>W1610000724
ABSF01000011
Euryarchaeota
Thermococcus barophilus MP [ABSF]
77507
77583
+
Ala
TGC
[ENA]
¡û
>W1610000889
ABXN01000014
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
103638
103714
+
Ala
TGC
[ENA]
¡û
>W1610004920
AHVB01000035
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
83011
83087
+
Ala
TGC
[ENA]
¡û
>W1610005578
AKID01000054
Euryarchaeota
Thermococcus sp. PK [AKID]
18208
18284
+
Ala
TGC
[ENA]
¡û
>W1610548859
JXCG01000001
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
152440
152364
-
Ala
TGC
[ENA]
¡û
>W1610613029
LGFJ01000006
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
41491
41415
-
Ala
TGC
[ENA]
¡û
>ENV001434
AY878139
Environmental sample from ENV division of INSDC
53
131
+
Ala
TGC
[ENA]
>ENV001435
AY878140
Environmental sample from ENV division of INSDC
53
131
+
Ala
TGC
[ENA]
>ENV001436
AY878141
Environmental sample from ENV division of INSDC
53
131
+
Ala
TGC
[ENA]
>ENV001437
AY878142
Environmental sample from ENV division of INSDC
53
131
+
Ala
TGC
[ENA]
>ENV001438
AY878143
Environmental sample from ENV division of INSDC
53
131
+
Ala
TGC
[ENA]
>ENV001441
AY878146
Environmental sample from ENV division of INSDC
52
130
+
Ala
TGC
[ENA]
>ENV001443
AY878148
Environmental sample from ENV division of INSDC
51
129
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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