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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179351 (9 seq.)
>WENV180245925
OBDN01004185
[OBDN] human gut metagenome; human gut
2797
2721
-
Leu
TAG
[ENA]
¢þ
>WENV182042453
OHDN01005126
[OHDN] human gut metagenome; feces
2737
2661
-
Leu
TAG
[ENA]
¢þ
>WENV182145842
OHKY01014626
[OHKY] human gut metagenome; feces
404
480
+
Leu
TAG
[ENA]
¢þ
>WENV182157783
OHLX01023830
[OHLX] human gut metagenome; feces
164
240
+
Leu
TAG
[ENA]
¢þ
>WENV182200529
OHPL01001037
[OHPL] human gut metagenome; feces
2729
2653
-
Leu
TAG
[ENA]
¢þ
>WENV182211816
OHQF01005320
[OHQF] human gut metagenome; feces
1385
1461
+
Leu
TAG
[ENA]
¢þ
>WENV182516596
OIWO01000067
[OIWO] human gut metagenome; faeces
121793
121869
+
Leu
TAG
[ENA]
¢þ
>WENV182911706
OKTL01004623
[OKTL] human gut metagenome; feces
1393
1469
+
Leu
TAG
[ENA]
¢þ
>WENV183053339
OLGL01008915
[OLGL] human gut metagenome; faeces
2950
2874
-
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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