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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179351 (35 seq.)
>W1711183493
LWLB01000012
Actinomycetota
Nocardiopsis sp. TSRI0078 [LWLB]
118410
118334
-
Met
CAT
[ENA]
¡û
>W1711346018
MCOK01000001
Actinomycetota
Nocardiopsis sinuspersici [MCOK]
924172
924248
+
Met
CAT
[ENA]
¡û
>W1711492087
MKKC01000087
Actinomycetota
Nocardiopsis sp. CNR-923 [MKKC]
62529
62453
-
Met
CAT
[ENA]
¡û
>W131053477
ANAC01000010
Actinomycetota
Nocardiopsis alba DSM 43377 [ANAC]
349423
349347
-
Met
CAT
[ENA]
¡û
>W131053607
ANAE01000177
Actinomycetota
Nocardiopsis prasina DSM 43845 [ANAE]
25474
25398
-
Met
CAT
[ENA]
¡û
>W131054597
ANAW01000133
Actinomycetota
Nocardiopsis synnemataformans DSM 44143 [ANAW]
34868
34944
+
Met
CAT
[ENA]
¡û
>W131054644
ANAX01000233
Actinomycetota
Nocardiopsis halotolerans DSM 44410 [ANAX]
46146
46070
-
Met
CAT
[ENA]
¡û
>W131054752
ANAZ01000004
Actinomycetota
Nocardiopsis valliformis DSM 45023 [ANAZ]
224508
224582
+
Met
CAT
[ENA]
¡û
>W131054797
ANBA01000009
Actinomycetota
Nocardiopsis ganjiahuensis DSM 45031 [ANBA]
711361
711285
-
Met
CAT
[ENA]
¡û
>W131054935
ANBC01000466
Actinomycetota
Nocardiopsis lucentensis DSM 44048 [ANBC]
8461
8537
+
Met
CAT
[ENA]
¡û
>W131054984
ANBD01000095
Actinomycetota
Nocardiopsis alkaliphila YIM 80379 [ANBD]
22445
22521
+
Met
CAT
[ENA]
¡û
>W131179396
ARMI01000062
Actinomycetota
Nocardiopsis sp. CNS-639 CNS639 [ARMI]
457016
457092
+
Met
CAT
[ENA]
¡û
>C171070722
CP017965
Actinomycetota
Nocardiopsis dassonvillei NOCA502F [CP017965]
1770950
1771026
+
Met
CAT
-
¡û
>W141219683
AZXF01000012
Actinomycetota
Nocardiopsis sp. CNT312 [AZXF]
192199
192275
+
Met
CAT
[ENA]
¡û
>W141236317
BAZE01000001
Actinomycetota
Nocardiopsis alba TP-A0876 [BAZE]
538289
538213
-
Met
CAT
[ENA]
¡û
>WENV183809988
PVBE011438869
[PVBE] marine metagenome; water
299
226
-
Ile2
CAT
[ENA]
¢þ
>WENV170398483
CEUD01226507
[CEUD] marine metagenome genome assembly TARA_137_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
560
486
-
Met
CAT
[ENA]
¢þ
>C181064850
CP022434
Actinomycetota
Nocardiopsis dassonvillei HZNU_N_1 [CP022434]
1766752
1766827
+
Met
CAT
-
¡û
>C191212899
LR134501
Actinomycetota
Nocardiopsis dassonvillei NCTC10488 [LR134501]
5856930
5857005
+
Met
CAT
-
¡û
>W09109556
ABUI01000010
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [ABUI]
15467
15391
-
Met
CAT
[ENA]
¡û
>W1910285487
FRFF01000188
Actinomycetota
Nocardiopsis sp. JB363 [FRFF]
16428
16353
-
Met
CAT
[ENA]
¡û
>W1911709924
QPNC01000009
Actinomycetota
Nocardiopsis sp. FIRDI 009 [QPNC]
129201
129276
+
Met
CAT
[ENA]
¡û
>W1810046827
NYMS01000006
Actinomycetota
Glycomyces fuscus TRM 49117 [NYMS]
256245
256170
-
Met
CAT
[ENA]
¡û
>W1810608285
QGTF01000001
Actinomycetota
Nocardiopsis sp. L17-MgMaSL7 [QGTF]
118122
118047
-
Met
CAT
[ENA]
¡û
>W1810756406
QPFC01000281
Actinomycetota
Nocardiopsis sp. TNDT3 [QPFC]
8711
8786
+
Met
CAT
[ENA]
¡û
>C10109675
CP002040
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [CP002040, CP002041]
953531
953607
+
Met
CAT
[Ensembl]
¡û
>W1511584558
LAVM01000026
Actinomycetota
Nocardiopsis sp. SBT366 [LAVM]
17256
17180
-
Met
CAT
[ENA]
¡û
>W1511656802
LEKI01000016
Actinomycetota
Nocardiopsis sp. RV163 [LEKI]
37337
37261
-
Met
CAT
[ENA]
¡û
>W1511697687
LGEC01000059
Actinomycetota
Nocardiopsis sp. NRRL B-16309 [LGEC]
76793
76717
-
Met
CAT
[ENA]
¡û
>W1610068888
BCRR01000004
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
94190
94266
+
Met
CAT
[ENA]
¡û
>W1610069200
BCSH01000019
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
19007
18931
-
Met
CAT
[ENA]
¡û
>C131006727
CP003788
Actinomycetota
Nocardiopsis alba ATCC BAA-2165 [CP003788]
3867998
3868074
+
Met
CAT
[Ensembl]
¡û
>W1710066261
BCRR01000004
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
94190
94266
+
Met
CAT
[ENA]
¡û
>W1710066573
BCSH01000019
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
19007
18931
-
Met
CAT
[ENA]
¡û
>W1710588482
FQZK01000002
Actinomycetota
Nocardiopsis flavescens [FQZK]
379392
379468
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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