This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179368 (109 seq.)
>C171055003
CP017015
Mycoplasmatota
Spiroplasma helicoides TABS-2 [CP017015]
164644
164720
+
Pro
TGG
-
¡û
>C171057588
CP017125
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae M1601 [CP017125]
871256
871332
+
Pro
TGG
-
¡û
>C171088928
CP019061
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae zly1309F [CP019061]
871218
871294
+
Pro
TGG
-
¡û
>W131061533
ANIV01000011
Mycoplasmatota
Mycoplasma mycoides subsp. capri PG3 [ANIV]
34304
34228
-
Pro
TGG
[ENA]
¡û
>W131098331
AORK01000023
Mycoplasmatota
Mycoplasma yeatsii 13926 [AORK]
47899
47975
+
Pro
TGG
[ENA]
¡û
>C013252
CP000123
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum ATCC 27343 [CP000123]
863305
863381
+
Pro
TGG
[Ensembl]
¡û
>C013425
AE017263
Mycoplasmatota
Mesoplasma florum L1 L1; ATCC 33453 [AE017263]
596501
596425
-
Pro
TGG
[Ensembl]
¡û
>C013857
BX293980
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides SC str. PG1 [BX293980]
932648
932724
+
Pro
TGG
[Ensembl]
¡û
>w025289
AAZK01000001
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides LC str. GM12 [AAZK]
225720
225642
-
Pro
TGG
[ENA]
¡û
>W141170390
AXXW01000003
Mycoplasmatota
[Acholeplasma] multilocale ATCC 49900 [AXXW]
13413
13489
+
Pro
TGG
[ENA]
¡û
>W141276868
JAED01000007
Mycoplasmatota
Mesoplasma seiffertii ATCC 49495 [JAED]
32463
32539
+
Pro
TGG
[ENA]
¡û
>W141277109
JAEI01000015
Mycoplasmatota
Mesoplasma chauliocola ATCC 49578 [JAEI]
54173
54097
-
Pro
TGG
[ENA]
¡û
>W141450921
JFAE01000005
Mycoplasmatota
Mycoplasma mycoides subsp. capri PG3 [JFAE]
53194
53118
-
Pro
TGG
[ENA]
¡û
>W141455525
JFDO01000030
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum 14232 [JFDO]
2961
3037
+
Pro
TGG
[ENA]
¡û
>C181067067
CP022505
Mycoplasmatota
Mesoplasma florum W23 [CP022505]
580600
580524
-
Pro
TGG
-
¡û
>C181067096
CP022508
Mycoplasmatota
Mesoplasma florum MouA-2 [CP022508]
586081
586005
-
Pro
TGG
-
¡û
>C181067125
CP022512
Mycoplasmatota
Mesoplasma florum MQ3 [CP022512]
607216
607140
-
Pro
TGG
-
¡û
>C181067154
CP022513
Mycoplasmatota
Mesoplasma florum CnuA-2 [CP022513]
615470
615394
-
Pro
TGG
-
¡û
>C181067183
CP022514
Mycoplasmatota
Mesoplasma florum BARC 787 [CP022514]
555255
555179
-
Pro
TGG
-
¡û
>C181067986
CP022535
Mycoplasmatota
Spiroplasma corruscae EC-1 [CP022535]
142415
142491
+
Pro
TGG
-
¡û
>C181076776
CP023173
Mycoplasmatota
Mesoplasma chauliocola CHPA-2 [CP023173]
636066
635990
-
Pro
TGG
-
¡û
>C181088634
CP023668
Mycoplasmatota
Mesoplasma lactucae ATCC 49193 831-C4 [CP023668]
555399
555323
-
Pro
TGG
-
¡û
>C181089568
CP023735
Mycoplasmatota
Mesoplasma florum GF1 [CP023735]
620059
619983
-
Pro
TGG
-
¡û
>C181089597
CP023736
Mycoplasmatota
Mesoplasma florum PPA1 [CP023736]
620409
620333
-
Pro
TGG
-
¡û
>C181099501
CP024411
Mycoplasmatota
Mesoplasma entomophilum TAC [CP024411]
656943
656867
-
Pro
TGG
-
¡û
>C181109498
CP024964
Mycoplasmatota
Mesoplasma melaleucae M1 [CP024964]
644351
644275
-
Pro
TGG
-
¡û
>C181109557
CP024966
Mycoplasmatota
Mesoplasma entomophilum TAC [CP024966]
656942
656866
-
Pro
TGG
-
¡û
>C181109581
CP024967
Mycoplasmatota
Mesoplasma lactucae ATCC 49193 831-C4 [CP024967]
155512
155588
+
Pro
TGG
-
¡û
>C181109617
CP024968
Mycoplasmatota
Mesoplasma coleopterae BARC 779 [CP024968]
608966
608890
-
Pro
TGG
-
¡û
>C181109646
CP024969
Mycoplasmatota
Mesoplasma tabanidae BARC 857 [CP024969]
642154
642078
-
Pro
TGG
-
¡û
>C181112531
CP025057
Mycoplasmatota
Spiroplasma floricola 23-6 [CP025057]
151091
151167
+
Pro
TGG
-
¡û
>C181115119
CP025257
Mycoplasmatota
Mesoplasma syrphidae YJS [CP025257]
744995
744919
-
Pro
TGG
-
¡û
>C181118861
CP025543
Mycoplasmatota
Spiroplasma monobiae MQ-1 [CP025543]
155350
155426
+
Pro
TGG
-
¡û
>C181199916
CP031376
Mycoplasmatota
Spiroplasma alleghenense PLHS-1 [CP031376]
177778
177854
+
Pro
TGG
-
¡û
>C191157068
CP038013
Mycoplasmatota
Spiroplasma gladiatoris TG-1 [CP038013]
183111
183187
+
Pro
TGG
-
¡û
>C191217986
LR214938
Mycoplasmatota
Metamycoplasma salivarium NCTC10113 [LR214938]
848400
848476
+
Pro
TGG
-
¡û
>C191224064
LS483500
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483500]
861031
861107
+
Pro
TGG
-
¡û
>C191224094
LS483501
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483501]
863423
863499
+
Pro
TGG
-
¡û
>C191224124
LS483502
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483502]
861217
861293
+
Pro
TGG
-
¡û
>C191224154
LS483503
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483503]
781176
781252
+
Pro
TGG
-
¡û
>C191224184
LS483504
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483504]
861526
861602
+
Pro
TGG
-
¡û
>C191224213
LS483505
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483505]
864351
864427
+
Pro
TGG
-
¡û
>C191224243
LS483506
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483506]
857340
857416
+
Pro
TGG
-
¡û
>C191224273
LS483507
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483507]
856788
856864
+
Pro
TGG
-
¡û
>C191224301
LS483508
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483508]
849857
849933
+
Pro
TGG
-
¡û
>C191224331
LS483509
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483509]
860142
860218
+
Pro
TGG
-
¡û
>C191224361
LS483510
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483510]
855505
855581
+
Pro
TGG
-
¡û
>C191224390
LS483511
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483511]
857854
857930
+
Pro
TGG
-
¡û
>C191224420
LS483512
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483512]
865124
865200
+
Pro
TGG
-
¡û
>C191224450
LS483513
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483513]
862909
862985
+
Pro
TGG
-
¡û
>C191224480
LS483514
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483514]
864991
865067
+
Pro
TGG
-
¡û
>C191224509
LS483515
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483515]
865124
865200
+
Pro
TGG
-
¡û
>C191224539
LS483516
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483516]
855680
855756
+
Pro
TGG
-
¡û
>C191224569
LS483517
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483517]
858625
858701
+
Pro
TGG
-
¡û
>C191224599
LS483518
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483518]
864995
865071
+
Pro
TGG
-
¡û
>C191224628
LS483519
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483519]
862418
862494
+
Pro
TGG
-
¡û
>C191224913
LS991954
Mycoplasmatota
Mycoplasma putrefaciens NCTC10155 [LS991954]
698685
698609
-
Pro
TGG
-
¡û
>W09100982
AADU01000001
Mycoplasmatota
Mesoplasma florum L1 [AADU]
596501
596425
-
Pro
TGG
[ENA]
¡û
>W141700852
JMJI01000005
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 99108 [JMJI]
18180
18104
-
Pro
TGG
[ENA]
¡û
>W141701666
JMKV01000004
Mycoplasmatota
Mesoplasma syrphidae ATCC 51578 [JMKV]
93741
93665
-
Pro
TGG
[ENA]
¡û
>W141701731
JMKX01000003
Mycoplasmatota
Mesoplasma melaleucae ATCC 49191 [JMKX]
59329
59253
-
Pro
TGG
[ENA]
¡û
>W141731414
JNJC01000001
Mycoplasmatota
Mesoplasma grammopterae ATCC 49580 [JNJC]
86075
85999
-
Pro
TGG
[ENA]
¡û
>W141731684
JNJI01000006
Mycoplasmatota
Mesoplasma photuris ATCC 49581 [JNJI]
64168
64092
-
Pro
TGG
[ENA]
¡û
>C141006891
CP006682
Mycoplasmatota
Spiroplasma apis B31 [CP006682]
144780
144856
+
Pro
TGG
[Ensembl]
¡û
>C141008495
CP006778
Mycoplasmatota
Mesoplasma florum W37 [CP006778]
606865
606789
-
Pro
TGG
[Ensembl]
¡û
>W1910597452
LATJ01000079
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides PO-67 [LATJ]
1603
1527
-
Pro
TGG
[ENA]
¡û
>W1910598091
LAUU01000003
Mycoplasmatota
Mycoplasma leachii 6049 [LAUU]
49125
49049
-
Pro
TGG
[ENA]
¡û
>W1910598138
LAUV01000068
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides B345/93 [LAUV]
1611
1535
-
Pro
TGG
[ENA]
¡û
>W1910598167
LAUW01000062
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides C425/93 [LAUW]
1510
1586
+
Pro
TGG
[ENA]
¡û
>W1910598192
LAUX01000122
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides KH3J [LAUX]
1612
1536
-
Pro
TGG
[ENA]
¡û
>W1910598204
LAUY01000022
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides str. Gemu Goffa [LAUY]
1596
1520
-
Pro
TGG
[ENA]
¡û
>W1810115707
PHND01000001
Mycoplasmatota
Entomoplasma ellychniae ELCN-1 [PHND]
67460
67536
+
Pro
TGG
[ENA]
¡û
>W1810115770
PHNF01000001
Mycoplasmatota
Mesoplasma corruscae ELCA-2 [PHNF]
511374
511450
+
Pro
TGG
[ENA]
¡û
>SRA1015068
SRR023845.446639
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
190
114
-
Pro
TGG
[SRA]
>C151010489
CP006681
Mycoplasmatota
Spiroplasma culicicola AES-1 [CP006681]
171545
171621
+
Pro
TGG
[Ensembl]
¡û
>C151014904
CP006934
Mycoplasmatota
Spiroplasma sabaudiense Ar-1343 [CP006934]
146712
146788
+
Pro
TGG
[Ensembl]
¡û
>C151015553
CP006959
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 87001 [CP006959]
871827
871903
+
Pro
TGG
[Ensembl]
¡û
>C151026412
CP007520
Mycoplasmatota
Mycoplasma yeatsii GM274B [CP007520]
690094
690018
-
Pro
TGG
[Ensembl]
¡û
>C151064912
CP010267
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides izsam_mm5713 [CP010267]
929575
929651
+
Pro
TGG
[Ensembl]
¡û
>C151093363
CP012328
Mycoplasmatota
Spiroplasma turonicum Tab4c [CP012328]
142719
142795
+
Pro
TGG
-
¡û
>C151093882
CP012357
Mycoplasmatota
Spiroplasma litorale TN-1 [CP012357]
139830
139906
+
Pro
TGG
-
¡û
>C151094658
CP012387
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [CP012387]
865124
865200
+
Pro
TGG
-
¡û
>C151096169
CP012622
Mycoplasmatota
Spiroplasma cantharicola CC-1 [CP012622]
165726
165802
+
Pro
TGG
-
¡û
>C151102620
LM995445
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 9231-Aboms [LM995445]
871805
871881
+
Pro
TGG
[Ensembl]
¡û
>C151102891
LN515398
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae type strain: F38 [LN515398]
871278
871354
+
Pro
TGG
[Ensembl]
¡û
>C151102920
LN515399
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae ILRI181 [LN515399]
871676
871752
+
Pro
TGG
[Ensembl]
¡û
>C10109469
CP002107
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides SC str. Gladysdale [CP002107]
938449
938525
+
Pro
TGG
[Ensembl]
¡û
>C11114584
FR668087
Mycoplasmatota
Mycoplasma leachii 99/014/6 [FR668087]
812480
812556
+
Pro
TGG
[Ensembl]
¡û
>C11114614
CP002108
Mycoplasmatota
Mycoplasma leachii PG50 [CP002108]
848633
848709
+
Pro
TGG
[Ensembl]
¡û
>C11114798
CP001621
Mycoplasmatota
Mycoplasma mycoides [CP001621]
856484
856560
+
Pro
TGG
[Ensembl]
¡û
>C11115074
CP003021
Mycoplasmatota
Mycoplasma putrefaciens KS1 [CP003021]
698689
698613
-
Pro
TGG
[Ensembl]
¡û
>W1511508407
JXQB01000001
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum GM508D [JXQB]
625015
624939
-
Pro
TGG
[ENA]
¡û
>W11141017
AENG01000002
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae M1601 [AENG]
109758
109834
+
Pro
TGG
[ENA]
¡û
>W1511565138
LAEW01000001
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides B237 [LAEW]
934550
934626
+
Pro
TGG
[ENA]
¡û
>W1511565169
LAEX01000007
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Afade [LAEX]
325289
325365
+
Pro
TGG
[ENA]
¡û
>W1511594888
LBMF01000007
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum 14DL0024 [LBMF]
111349
111425
+
Pro
TGG
[ENA]
¡û
>W1511691355
LFYS01000006
Mycoplasmatota
Mycoplasma sp. HU2014 [LFYS]
4823
4747
-
Pro
TGG
[ENA]
¡û
>C121001656
CP001668
Mycoplasmatota
Mycoplasma mycoides [CP001668]
862755
862831
+
Pro
TGG
-
¡û
>C121016876
FQ377874
Mycoplasmatota
Mycoplasma mycoides subsp. capri LC str. 95010 [FQ377874]
928447
928523
+
Pro
TGG
[Ensembl]
¡û
>C161033044
CP011260
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben1 [CP011260]
895176
895252
+
Pro
TGG
-
¡û
>C161033073
CP011261
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben50 [CP011261]
909215
909291
+
Pro
TGG
-
¡û
>C161033102
CP011262
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben181 [CP011262]
894484
894560
+
Pro
TGG
-
¡û
>C161033132
CP011263
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben326 [CP011263]
886520
886596
+
Pro
TGG
-
¡û
>C161033161
CP011264
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben468 [CP011264]
850197
850273
+
Pro
TGG
-
¡û
>C161061380
CP013860
Mycoplasmatota
Spiroplasma turonicum Tab4c [CP013860]
142617
142693
+
Pro
TGG
-
¡û
>C161071667
CP014346
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides T1/44 [CP014346]
394804
394728
-
Pro
TGG
[Ensembl]
¡û
>C131013518
CP004357
Mycoplasmatota
Mycoplasma putrefaciens Mput9231 [CP004357]
132189
132265
+
Pro
TGG
[Ensembl]
¡û
>C131014646
CP005074
Mycoplasmatota
Spiroplasma taiwanense CT-1 [CP005074]
170687
170763
+
Pro
TGG
[Ensembl]
¡û
>C131014675
CP005076
Mycoplasmatota
Spiroplasma diminutum CUAS-1 [CP005076]
153248
153324
+
Pro
TGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK