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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179372 (37 seq.)
>W1711115576
LUAH01000036
Bacteroidota
Sphingobacterium sp. HMSC13C05 [LUAH]
66835
66909
+
Met
CAT
[ENA]
¡û
>W1711712764
MTCM01000002
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
27697
27621
-
Met
CAT
[ENA]
¡û
>C171089513
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
5342152
5342226
+
Met
CAT
-
¡û
>C171118449
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
4931049
4931125
+
Met
CAT
-
¡û
>WENV183726572
PJTO01000015
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
28200
28126
-
Ile2
CAT
[ENA]
¢þ
>WENV183727766
PJTP01000176
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
28200
28126
-
Ile2
CAT
[ENA]
¢þ
>WENV183728345
PJTQ01000022
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
28200
28126
-
Ile2
CAT
[ENA]
¢þ
>WENV183730652
PJTS01000259
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
12654
12728
+
Ile2
CAT
[ENA]
¢þ
>WENV183732406
PJTX01000119
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
17261
17335
+
Ile2
CAT
[ENA]
¢þ
>WENV183733025
PJTY01000020
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
22510
22436
-
Ile2
CAT
[ENA]
¢þ
>WENV183734035
PJTZ01000023
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
22510
22436
-
Ile2
CAT
[ENA]
¢þ
>WENV183734952
PJUA01000220
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
28200
28126
-
Ile2
CAT
[ENA]
¢þ
>WENV183735178
PJUA01002044
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
144
218
+
Ile2
CAT
[ENA]
¢þ
>WENV183735629
PJUB01000262
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
28200
28126
-
Ile2
CAT
[ENA]
¢þ
>WENV183735834
PJUB01004278
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
1029
955
-
Ile2
CAT
[ENA]
¢þ
>WENV183736574
PJUC01014655
[PJUC] soil metagenome; Soil enriched on filter paper
6
80
+
Ile2
CAT
[ENA]
¢þ
>WENV183736607
PJUC01022107
[PJUC] soil metagenome; Soil enriched on filter paper
86
12
-
Ile2
CAT
[ENA]
¢þ
>WENV183736761
PJUD01000016
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
323683
323757
+
Ile2
CAT
[ENA]
¢þ
>WENV183736785
PJUD01000026
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
230317
230391
+
Ile2
CAT
[ENA]
¢þ
>WENV183736908
PJUD01000095
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
8240
8316
+
Ile2
CAT
[ENA]
¢þ
>WENV183738554
PJUE01000019
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
323683
323757
+
Ile2
CAT
[ENA]
¢þ
>WENV183738809
PJUE01000233
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
45046
44970
-
Ile2
CAT
[ENA]
¢þ
>WENV183738968
PJUE01000673
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
8052
8126
+
Ile2
CAT
[ENA]
¢þ
>WENV183740218
PJUF01000741
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
13419
13493
+
Ile2
CAT
[ENA]
¢þ
>WENV183741458
PJUG01000017
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
33768
33694
-
Ile2
CAT
[ENA]
¢þ
>WENV183741952
PJUH01000014
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
33768
33694
-
Ile2
CAT
[ENA]
¢þ
>WENV183742607
PJUI01000025
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
33768
33694
-
Ile2
CAT
[ENA]
¢þ
>WENV183743054
PJUJ01000015
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
33768
33694
-
Ile2
CAT
[ENA]
¢þ
>WENV183743858
PJUK01000014
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
33768
33694
-
Ile2
CAT
[ENA]
¢þ
>W1910664406
MCAQ01000029
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
31464
31390
-
Met
CAT
[ENA]
¡û
>W1810002541
BEYR01000001
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
3170015
3170089
+
Met
CAT
[ENA]
¡û
>W1810531960
QCXX01000012
Bacteroidota
Sphingobacterium athyrii M46 [QCXX]
94274
94348
+
Met
CAT
[ENA]
¡û
>C11117948
CP002545
Bacteroidota
Pseudopedobacter saltans DSM 12145 [CP002545]
690160
690084
-
Met
CAT
[Ensembl]
¡û
>C11121235
CP002584
Bacteroidota
Sphingobacterium sp. 21 [CP002584]
2785816
2785742
-
Met
CAT
[Ensembl]
¡û
>W11140082
AEKX01000014
Bacteroidota
Pseudopedobacter saltans DSM 12145 [AEKX]
50256
50180
-
Met
CAT
[ENA]
¡û
>W1511590244
LBGU01000021
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
27974
27898
-
Met
CAT
[ENA]
¡û
>W1710545647
FOBR01000006
Unclassified
bacterium A37T11 [FOBR]
51299
51375
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK