This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179427 (13 seq.)
>C171049467
CP016432
Chlorobiota
Prosthecochloris sp. CIB 2401 [CP016432]
1481861
1481785
-
Arg
TCT
-
¡û
>C171114017
CP020873
Chlorobiota
Prosthecochloris sp. HL-130-GSB [CP020873]
1507359
1507283
-
Arg
TCT
-
¡û
>w007156
AAIJ01000005
Chlorobiota
Prosthecochloris aestuarii DSM 271 [AAIJ]
80739
80817
+
Arg
TCT
[ENA]
¡û
>WENV181237134
OFFA01158124
[OFFA] coral metagenome; NA
487
413
-
Arg
TCT
[ENA]
¢þ
>C08003656
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
1762764
1762688
-
Arg
TCT
[Ensembl]
¡û
>C08003803
CP001100
Chlorobiota
Chloroherpeton thalassium ATCC 35110 [CP001100]
1778963
1779037
+
Arg
TCT
[Ensembl]
¡û
>C08007157
CP001108
Chlorobiota
Prosthecochloris aestuarii DSM 271 [CP001108]
894850
894926
+
Arg
TCT
[Ensembl]
¡û
>WENV183513448
OMKS01005044
[OMKS] sediment metagenome; hot spring sediment
8494
8568
+
Arg
TCT
[ENA]
¢þ
>C181068792
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
1533859
1533785
-
Arg
TCT
-
¡û
>W1810062191
PDNX01000007
Chlorobiota
Prosthecochloris sp. ZM [PDNX]
1637594
1637520
-
Arg
TCT
[ENA]
¡û
>W1810062235
PDNY01000023
Chlorobiota
Prosthecochloris sp. ZM_2 [PDNY]
5547
5473
-
Arg
TCT
[ENA]
¡û
>W1810062277
PDNZ01000005
Chlorobiota
Prosthecochloris marina V1 [PDNZ]
49479
49553
+
Arg
TCT
[ENA]
¡û
>SRA1054668
SRR035099.184825
454 Sequencing (SRP001820)
483
407
-
Arg
TCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK