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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179429 (50 seq.)
>W1710908977
LNQB01000079
Alphaproteobacteria
Sinorhizobium saheli [LNQB]
14823
14899
+
Arg
CCT
[ENA]
¡û
>W1711169128
LVYU01000079
Alphaproteobacteria
Rhizobium leguminosarum [LVYU]
190808
190884
+
Arg
CCT
[ENA]
¡û
>W1711353306
MDDW01000004
Alphaproteobacteria
Rhizobium sp. LCM 4573 [MDDW]
79928
80004
+
Arg
CCT
[ENA]
¡û
>W1711501243
MKRJ01000046
Alphaproteobacteria
Rhizobiales bacterium 65-79 [MKRJ]
99787
99711
-
Arg
CCT
[ENA]
¡û
>W1711727509
MTSX01000003
Alphaproteobacteria
Kiloniella majae M146.1 [MTSX]
604054
604130
+
Arg
CCT
[ENA]
¡û
>W1711727522
MTSY01000001
Alphaproteobacteria
Kiloniella majae SBRF1.10 [MTSY]
696400
696324
-
Arg
CCT
[ENA]
¡û
>W1711727585
MTSZ01000007
Alphaproteobacteria
Kiloniella majae M56.1 [MTSZ]
87688
87764
+
Arg
CCT
[ENA]
¡û
>C171057089
CP017101
Alphaproteobacteria
Rhizobium gallicum IE4872 [CP017101]
3951373
3951449
+
Arg
CCT
-
¡û
>C171059072
CP017241
Alphaproteobacteria
Rhizobium etli 8C-3 [CP017241]
3824256
3824332
+
Arg
CCT
-
¡û
>C171114624
CP020906
Alphaproteobacteria
Rhizobium etli NXC12 [CP020906]
3973876
3973952
+
Arg
CCT
-
¡û
>C171115045
CP021024
Alphaproteobacteria
Rhizobium sp. TAL182 [CP021024]
4164827
4164903
+
Arg
CCT
-
¡û
>C171115098
CP021030
Alphaproteobacteria
Rhizobium sp. NXC14 [CP021030]
4151073
4151149
+
Arg
CCT
-
¡û
>C171117298
CP021219
Alphaproteobacteria
Sinorhizobium meliloti RU11/001 [CP021219]
1553855
1553779
-
Arg
CCT
-
¡û
>C171123404
CP021797
Alphaproteobacteria
Sinorhizobium meliloti USDA1106 [CP021797]
2100061
2099985
-
Arg
CCT
-
¡û
>C171123660
CP021818
Alphaproteobacteria
Sinorhizobium meliloti M162 [CP021818]
3482547
3482623
+
Arg
CCT
-
¡û
>W131159026
AQUS01000209
Alphaproteobacteria
Sinorhizobium medicae WSM1369 [AQUS]
1854
1778
-
Arg
CCT
[ENA]
¡û
>C018413
CP000133
Alphaproteobacteria
Rhizobium etli CFN 42 [CP000133]
4058204
4058280
+
Arg
CCT
[Ensembl]
¡û
>W141022645
AJUI01000027
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii CC278f [AJUI]
288366
288290
-
Arg
CCT
[ENA]
¡û
>WENV170201009
CEPP01043850
[CEPP] marine metagenome genome assembly TARA_042_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
392
468
+
Arg
CCT
[ENA]
¢þ
>C181099205
CP024307
Alphaproteobacteria
Sinorhizobium fredii NXT3 [CP024307]
3609122
3609198
+
Arg
CCT
-
¡û
>C141004097
CP005950
Alphaproteobacteria
Rhizobium etli bv. mimosae str. Mim1 [CP005950]
3938552
3938628
+
Arg
CCT
[Ensembl]
¡û
>W1910636539
LODU01000070
Alphaproteobacteria
Sinorhizobium americanum FG01 [LODU]
397462
397386
-
Arg
CCT
[ENA]
¡û
>W1910658187
MBFK01000024
Alphaproteobacteria
Sinorhizobium shofinae CCBAU 251167 [MBFK]
96465
96389
-
Arg
CCT
[ENA]
¡û
>W1910831865
MXPU01000002
Alphaproteobacteria
Rhizobium esperanzae CNPSo 668 [MXPU]
39241
39317
+
Arg
CCT
[ENA]
¡û
>W1911409314
NWSU01000003
Alphaproteobacteria
Rhizobium sp. S9 [NWSU]
83086
83162
+
Arg
CCT
[ENA]
¡û
>W1911409572
NWSZ01000038
Alphaproteobacteria
Rhizobium sp. L9 [NWSZ]
12187
12111
-
Arg
CCT
[ENA]
¡û
>W1911409642
NWTB01000007
Alphaproteobacteria
Sinorhizobium sp. FG01 [NWTB]
397462
397386
-
Arg
CCT
[ENA]
¡û
>W1911539426
OMPU01000013
Alphaproteobacteria
Kiloniella sp. EL199 [OMPU]
631040
631116
+
Arg
CCT
[ENA]
¡û
>W1810192917
PKMZ01000005
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
214623
214699
+
Arg
CCT
[ENA]
¡û
>W1810324342
PUDR01000008
Alphaproteobacteria
Pannonibacter carbonis Q4.6 [PUDR]
148898
148822
-
Arg
CCT
[ENA]
¡û
>W1810675957
QKLQ01000005
Alphaproteobacteria
Ensifer sp. AP48 [QKLQ]
286247
286171
-
Arg
CCT
[ENA]
¡û
>C151013865
CP006877
Alphaproteobacteria
Rhizobium gallicum bv. gallicum R602sp [CP006877]
3807864
3807940
+
Arg
CCT
[Ensembl]
¡û
>W1511318833
JPYQ01000055
Alphaproteobacteria
Rhizobium sp. YS-1r [JPYQ]
470868
470792
-
Arg
CCT
[ENA]
¡û
>W1511577060
LAQL01000002
Alphaproteobacteria
Kiloniella spongiae MEBiC09566 [LAQL]
712838
712762
-
Arg
CCT
[ENA]
¡û
>W1511582706
LATE01000150
Alphaproteobacteria
Sinorhizobium sp. PC2 [LATE]
37920
37996
+
Arg
CCT
[ENA]
¡û
>C161056455
CP013490
Alphaproteobacteria
Rhizobium sp. N6212 [CP013490]
4100487
4100563
+
Arg
CCT
-
¡û
>C161056506
CP013495
Alphaproteobacteria
Rhizobium sp. N621 [CP013495]
4100128
4100204
+
Arg
CCT
-
¡û
>C161056557
CP013500
Alphaproteobacteria
Rhizobium esperanzae N561 [CP013500]
4149614
4149690
+
Arg
CCT
-
¡û
>C161056608
CP013505
Alphaproteobacteria
Rhizobium sp. N1341 [CP013505]
4146835
4146911
+
Arg
CCT
-
¡û
>C161056659
CP013511
Alphaproteobacteria
Rhizobium sp. N1314 [CP013511]
4011558
4011634
+
Arg
CCT
-
¡û
>C161056710
CP013517
Alphaproteobacteria
Rhizobium sp. N113 [CP013517]
4189877
4189953
+
Arg
CCT
[Ensembl]
¡û
>C161057424
CP013590
Alphaproteobacteria
Rhizobium sp. N871 [CP013590]
4149965
4150041
+
Arg
CCT
-
¡û
>C161057475
CP013595
Alphaproteobacteria
Rhizobium sp. N741 [CP013595]
4147264
4147340
+
Arg
CCT
[Ensembl]
¡û
>C161057526
CP013601
Alphaproteobacteria
Rhizobium sp. N731 [CP013601]
4011558
4011634
+
Arg
CCT
-
¡û
>W121066169
AJQP01000139
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83622 [AJQP]
79629
79705
+
Arg
CCT
[ENA]
¡û
>W121066272
AJQR01000288
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83666 [AJQR]
35328
35404
+
Arg
CCT
[ENA]
¡û
>W121066307
AJQS01000127
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83753 [AJQS]
1303
1227
-
Arg
CCT
[ENA]
¡û
>W1610767336
LNQB01000079
Alphaproteobacteria
Sinorhizobium saheli [LNQB]
14823
14899
+
Arg
CCT
[ENA]
¡û
>W1710505189
FMTM01000017
Alphaproteobacteria
Rhizobium mongolense loessense [FMTM]
87067
87143
+
Arg
CCT
[ENA]
¡û
>W1710509455
FMXF01000006
Alphaproteobacteria
Sinorhizobium sp. NFACC03 [FMXF]
228928
228852
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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