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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179458 (86 seq.)
>W1710787539
LJJR01000024
Deinococcota
Thermus scotoductus [LJJR]
1704
1780
+
Arg
CCT
[ENA]
¡û
>C171047218
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
1666770
1666694
-
Arg
CCT
-
¡û
>W131155595
AQOS01000005
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
74520
74596
+
Arg
CCT
[ENA]
¡û
>W131160727
AQWU01000065
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
67760
67684
-
Arg
CCT
[ENA]
¡û
>W131167513
ARDI01000003
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
96697
96621
-
Arg
CCT
[ENA]
¡û
>W131177919
ARLD01000087
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
74431
74507
+
Arg
CCT
[ENA]
¡û
>W131218070
ATXJ01000001
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
14875
14951
+
Arg
CCT
[ENA]
¡û
>W131231945
AUIW01000003
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
7242
7318
+
Arg
CCT
[ENA]
¡û
>C025896
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
1804570
1804494
-
Arg
CCT
[Ensembl]
¡û
>C025920
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
108195
108271
+
Arg
CCT
[Ensembl]
¡û
>WENV180036970
FVAA010489890
[FVAA] soil metagenome; Soil
245
169
-
Arg
CCT
[ENA]
¢þ
>W141080532
ATNI01000119
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
18765
18841
+
Arg
CCT
[ENA]
¡û
>W08011570
ABVK01000001
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
29783
29710
-
Arg
CCT
[ENA]
¡û
>WENV181227500
OFDN01013314
[OFDN] hot springs metagenome; Water
2045
2121
+
Arg
CCT
[ENA]
¢þ
>WENV181404803
OGCB01000326
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
7017
7093
+
Arg
CCT
[ENA]
¢þ
>WENV181405565
OGCE01000380
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
132
208
+
Arg
CCT
[ENA]
¢þ
>WENV181408256
OGCH01001219
[OGCH] hot springs metagenome; hot springs
7586
7510
-
Arg
CCT
[ENA]
¢þ
>WENV170700830
LJSS01002221
[LJSS] hot springs metagenome; water from Lobios Hot Spring
637
713
+
Arg
CCT
[ENA]
¢þ
>C181003560
AP017920
Deinococcota
Thermus thermophilus TMY [AP017920]
1011656
1011732
+
Arg
CCT
-
¡û
>C191159659
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
1273871
1273947
+
Arg
CCT
-
¡û
>C191190003
LR027517
Deinococcota
Thermus thermophilus [LR027517]
1399366
1399442
+
Arg
CCT
-
¡û
>W141818240
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
1283060
1283136
+
Arg
CCT
[ENA]
¡û
>W141818304
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
963448
963372
-
Arg
CCT
[ENA]
¡û
>W141820357
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
1593222
1593298
+
Arg
CCT
[ENA]
¡û
>W141820778
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
88919
88843
-
Arg
CCT
[ENA]
¡û
>W1911578779
PELL01000011
Deinococcota
Thermus scotoductus 39_S39 [PELL]
13920
13844
-
Arg
CCT
[ENA]
¡û
>W1911578847
PELM01000277
Deinococcota
Thermus scotoductus 38_S38 [PELM]
3743
3819
+
Arg
CCT
[ENA]
¡û
>W1911578895
PELN01000177
Deinococcota
Thermus scotoductus 37_S37 [PELN]
9675
9751
+
Arg
CCT
[ENA]
¡û
>W1911578933
PELO01000056
Deinococcota
Thermus scotoductus 35_S35 [PELO]
956
880
-
Arg
CCT
[ENA]
¡û
>W1911578992
PELP01000299
Deinococcota
Thermus scotoductus 34_S34 [PELP]
3744
3820
+
Arg
CCT
[ENA]
¡û
>W1911579032
PELQ01000054
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
937
861
-
Arg
CCT
[ENA]
¡û
>W1911579112
PELR01000396
Deinococcota
Thermus scotoductus 32_S32 [PELR]
11053
10977
-
Arg
CCT
[ENA]
¡û
>W1911579130
PELS01000199
Deinococcota
Thermus scotoductus 31_S31 [PELS]
1121
1045
-
Arg
CCT
[ENA]
¡û
>W1911579176
PELT01000050
Deinococcota
Thermus scotoductus 30_S30 [PELT]
950
874
-
Arg
CCT
[ENA]
¡û
>W1911579231
PELU01000155
Deinococcota
Thermus scotoductus 29_S29 [PELU]
9095
9019
-
Arg
CCT
[ENA]
¡û
>W1911579286
PELV01000288
Deinococcota
Thermus scotoductus 28_S28 [PELV]
10592
10516
-
Arg
CCT
[ENA]
¡û
>W1911579340
PELW01000377
Deinococcota
Thermus scotoductus 27_S27 [PELW]
589
665
+
Arg
CCT
[ENA]
¡û
>W1911579367
PELX01000058
Deinococcota
Thermus scotoductus 26_S26 [PELX]
984
908
-
Arg
CCT
[ENA]
¡û
>W1911579382
PELX01000285
Deinococcota
Thermus scotoductus 26_S26 [PELX]
9158
9082
-
Arg
CCT
[ENA]
¡û
>W1911579421
PELY01000070
Deinococcota
Thermus scotoductus 25_S25 [PELY]
800
724
-
Arg
CCT
[ENA]
¡û
>W1911579474
PELZ01000299
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
4076
4152
+
Arg
CCT
[ENA]
¡û
>W1911579513
PEMA01000281
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
13478
13554
+
Arg
CCT
[ENA]
¡û
>W1911579558
PEMB01000133
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
10679
10603
-
Arg
CCT
[ENA]
¡û
>W1911579562
PEMB01000175
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
690
766
+
Arg
CCT
[ENA]
¡û
>W1911579604
PEMC01000058
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
913
837
-
Arg
CCT
[ENA]
¡û
>W1911579649
PEMD01000046
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
879
803
-
Arg
CCT
[ENA]
¡û
>W1911579693
PEME01000085
Deinococcota
Thermus scotoductus 19_S19 [PEME]
2521
2597
+
Arg
CCT
[ENA]
¡û
>W1911579745
PEMF01000022
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
4091
4167
+
Arg
CCT
[ENA]
¡û
>W1911579806
PEMG01000305
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
204
280
+
Arg
CCT
[ENA]
¡û
>W1911579867
PEMH01000375
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
12152
12076
-
Arg
CCT
[ENA]
¡û
>W1911579887
PEMI01000110
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
11351
11275
-
Arg
CCT
[ENA]
¡û
>W1911579953
PEMJ01000255
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
3078
3154
+
Arg
CCT
[ENA]
¡û
>W1911579989
PEMK01000159
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
690
766
+
Arg
CCT
[ENA]
¡û
>W1911580034
PEML01000156
Deinococcota
Thermus scotoductus 12_S12 [PEML]
690
766
+
Arg
CCT
[ENA]
¡û
>W1911580047
PEML01000288
Deinococcota
Thermus scotoductus 12_S12 [PEML]
3759
3835
+
Arg
CCT
[ENA]
¡û
>W1911580077
PEMM01000054
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
1083
1007
-
Arg
CCT
[ENA]
¡û
>W1911580083
PEMM01000067
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
3759
3835
+
Arg
CCT
[ENA]
¡û
>W1911580141
PEMN01000221
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
5594
5670
+
Arg
CCT
[ENA]
¡û
>W1911580183
PEMO01000166
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
9688
9764
+
Arg
CCT
[ENA]
¡û
>W1911580253
PEMP01000417
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
18131
18207
+
Arg
CCT
[ENA]
¡û
>W1911580280
PEMQ01000244
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
9081
9157
+
Arg
CCT
[ENA]
¡û
>W1911580303
PEMQ01000308
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
3929
4005
+
Arg
CCT
[ENA]
¡û
>W1911580304
PEMQ01000308
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
4558
4482
-
Arg
CCT
[ENA]
¡û
>W1911580325
PEMR01000050
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
4001
4077
+
Arg
CCT
[ENA]
¡û
>W1911580390
PEMS01000398
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
372
448
+
Arg
CCT
[ENA]
¡û
>W1911580417
PEMT01000051
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
3918
3994
+
Arg
CCT
[ENA]
¡û
>W1911580466
PEMU01000092
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
1529
1605
+
Arg
CCT
[ENA]
¡û
>W1911580517
PEMV01000157
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
902
826
-
Arg
CCT
[ENA]
¡û
>W1810268443
PRDA01000019
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
43527
43603
+
Arg
CCT
[ENA]
¡û
>W1810605080
QGMX01000002
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
91345
91421
+
Arg
CCT
[ENA]
¡û
>W1810889167
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
1696387
1696311
-
Arg
CCT
[ENA]
¡û
>ENV09004196
ADKJ01001543
Hot springs metagenome ctg_1106445192081
1535
1611
+
Arg
CCT
[ENA]
¡û
>W1511312785
JPSL02000039
Deinococcota
Thermus filiformis ATCC 43280 [JPSL]
77950
78026
+
Arg
CCT
[ENA]
¡û
>W1511401687
JTJB01000009
Deinococcota
Thermus sp. 2.9 [JTJB]
3784
3708
-
Arg
CCT
[ENA]
¡û
>C11123055
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
1895934
1896010
+
Arg
CCT
[Ensembl]
¡û
>C11123211
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
260513
260437
-
Arg
CCT
[Ensembl]
¡û
>C121006403
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
1802929
1803005
+
Arg
CCT
[Ensembl]
¡û
>C121009738
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
1683565
1683641
+
Arg
CCT
[Ensembl]
¡û
>C161028680
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
1719462
1719538
+
Arg
CCT
-
¡û
>C161067100
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
1725036
1725112
+
Arg
CCT
[Ensembl]
¡û
>W121056021
AIJQ01000002
Deinococcota
Thermus parvatiensis RL [AIJQ]
213129
213053
-
Arg
CCT
[ENA]
¡û
>W1610045322
BBBL01000135
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
2483
2559
+
Arg
CCT
[ENA]
¡û
>C131002397
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
1678976
1679052
+
Arg
CCT
[Ensembl]
¡û
>W1610651394
LJJR01000024
Deinococcota
Thermus scotoductus [LJJR]
1704
1780
+
Arg
CCT
[ENA]
¡û
>W1710042163
BBBL01000135
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
2483
2559
+
Arg
CCT
[ENA]
¡û
>W1710514661
FNBC01000029
Deinococcota
Thermus arciformis [FNBC]
28006
28082
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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