This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.17957 (24 seq.)
>W1710996589
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1213072
1213162
+
Ser
TGA
[ENA]
¡û
>W131186717
ARWI01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Kp2 Kp2 [ARWI]
611992
611902
-
Ser
TGA
[ENA]
¡û
>W1711585442
MNZS01000006
Gammaproteobacteria
Thiomicrospira sp. CG2_30_44_34 [MNZS]
8981
9071
+
Ser
TGA
[ENA]
¡û
>C025345
CP000109
Gammaproteobacteria
Hydrogenovibrio crunogenus [CP000109]
839313
839403
+
Ser
TGA
[Ensembl]
¡û
>W141170922
AXZC01000004
Gammaproteobacteria
Thiomicrorhabdus chilensis DSM 12352 [AXZC]
151424
151514
+
Ser
TGA
[ENA]
¡û
>W141279826
JAGP01000001
Gammaproteobacteria
Hydrogenovibrio kuenenii DSM 12350 [JAGP]
820853
820943
+
Ser
TGA
[ENA]
¡û
>WENV170779587
LZQQ01000073
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
14187
14097
-
Ser
TGA
[ENA]
¢þ
>WENV170779711
LZQR01000038
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
7334
7244
-
Ser
TGA
[ENA]
¢þ
>C191011674
CP014470
Gammaproteobacteria
Thiomicrospira sp. S5 [CP014470]
2056715
2056625
-
Ser
TGA
-
¡û
>C191084372
CP032096
Gammaproteobacteria
Hydrogenovibrio crunogenus SP-41 [CP032096]
808529
808619
+
Ser
TGA
-
¡û
>C191098462
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
1816201
1816111
-
Ser
TGA
-
¡û
>C191134027
CP035033
Gammaproteobacteria
Hydrogenovibrio thermophilus JR-2 [CP035033]
929469
929559
+
Ser
TGA
-
¡û
>C191180148
CP040602
Gammaproteobacteria
Thiomicrorhabdus sediminis G1 [CP040602]
888626
888716
+
Ser
TGA
-
¡û
>W141700039
JMIU01000001
Gammaproteobacteria
Hydrogenovibrio marinus [JMIU]
86841
86931
+
Ser
TGA
[ENA]
¡û
>W141776922
JOMK01000001
Gammaproteobacteria
Hydrogenovibrio sp. MA2-6 MA2-6 [JOMK]
86922
87012
+
Ser
TGA
[ENA]
¡û
>W141776970
JOML01000002
Gammaproteobacteria
Hydrogenovibrio marinus DSM 11271 [JOML]
451247
451337
+
Ser
TGA
[ENA]
¡û
>W141820279
JQMT01000001
Gammaproteobacteria
Hydrogenovibrio sp. Milos-T1 Milos-T1 [JQMT]
1333410
1333320
-
Ser
TGA
[ENA]
¡û
>W1810185556
PKGB01000022
Gammaproteobacteria
Hydrogenovibrio sp. SC-1 [PKGB]
7778
7688
-
Ser
TGA
[ENA]
¡û
>C151016207
CP007030
Gammaproteobacteria
Thiomicrospira aerophila AL3 [CP007030]
834146
834236
+
Ser
TGA
[Ensembl]
¡û
>C11122545
CP002776
Gammaproteobacteria
Thiomicrospira cyclica ALM1 [CP002776]
1124333
1124243
-
Ser
TGA
[Ensembl]
¡û
>W1511534012
JYNN01000010
Gammaproteobacteria
Thiomicrospira microaerophila ASL8-2 [JYNN]
72593
72503
-
Ser
TGA
[ENA]
¡û
>W11178517
AGFA01000001
Gammaproteobacteria
Thiomicrospira aerophila AL3 [AGFA]
144572
144482
-
Ser
TGA
[ENA]
¡û
>W1610851246
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1213072
1213162
+
Ser
TGA
[ENA]
¡û
>W1710575172
FOYY01000003
Gammaproteobacteria
Thiomicrospira sp. ALE5 ALE5 [FOYY]
415966
415876
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK