This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179638 (35 seq.)
>W1710852944
LLWE01000024
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
447280
447356
+
Arg
CCG
[ENA]
¡û
>W1711424974
MIEL01000029
Alphaproteobacteria
Pseudovibrio brasiliensis Ab134 [MIEL]
409192
409268
+
Arg
CCG
[ENA]
¡û
>W1711798596
MWVJ01000036
Alphaproteobacteria
Pseudophaeobacter leonis [MWVJ]
51955
52031
+
Arg
CCG
[ENA]
¡û
>W131223033
AUBS01000070
Alphaproteobacteria
Pseudodonghicola xiamenensis DSM 18339 [AUBS]
1113
1037
-
Arg
CCG
[ENA]
¡û
>w023588
AAXZ01000003
Alphaproteobacteria
Rhodobacteraceae bacterium HTCC2150 HTCC2150 [AAXZ]
290537
290459
-
Arg
CCG
[ENA]
¡û
>WENV180114077
OAPR01140612
[OAPR] marine metagenome; seawater
219
143
-
Arg
CCG
[ENA]
¢þ
>WENV180291571
OBIV01085112
[OBIV] soil metagenome; Clay
261
187
-
Arg
CCG
[ENA]
¢þ
>WENV180394554
OBPS01016639
[OBPS] marine metagenome; ENVO:00002010 seawater
190
114
-
Arg
CCG
[ENA]
¢þ
>WENV182549294
OJBY01000149
[OJBY] seawater metagenome; Sea water
8291
8215
-
Arg
CCG
[ENA]
¢þ
>WENV182553646
OJCR01016976
[OJCR] seawater metagenome; Sea water
99
23
-
Arg
CCG
[ENA]
¢þ
>WENV170577150
FRDC01003633
[FRDC] freshwater metagenome; water
49886
49810
-
Arg
CCG
[ENA]
¢þ
>WENV170783888
MAAC01019385
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3429
3353
-
Arg
CCG
[ENA]
¢þ
>C181062151
CP022336
Alphaproteobacteria
Sphingorhabdus sp. SMR4y [CP022336]
2800403
2800327
-
Arg
CCG
-
¡û
>C181068280
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
1713498
1713422
-
Arg
CCG
-
¡û
>C191159575
CP038439
Alphaproteobacteria
Paracoccus liaowanqingii 2251 [CP038439]
2079747
2079823
+
Arg
CCG
-
¡û
>W1910443341
FWFZ01000018
Alphaproteobacteria
Roseisalinus antarcticus CECT 7023 [FWFZ]
14861
14785
-
Arg
CCG
[ENA]
¡û
>W1910499871
FXYH01000006
Alphaproteobacteria
Pelagimonas varians CECT 8663 [FXYH]
233238
233314
+
Arg
CCG
[ENA]
¡û
>W1910549862
FZQB01000002
Alphaproteobacteria
Paracoccus seriniphilus DSM 14827 [FZQB]
321773
321697
-
Arg
CCG
[ENA]
¡û
>W1911718107
QQVY01000005
Alphaproteobacteria
Paracoccus sp. JM45 [QQVY]
74423
74347
-
Arg
CCG
[ENA]
¡û
>W1810364895
PVTP01000001
Alphaproteobacteria
Yoonia maritima DSM 101533 [PVTP]
333296
333372
+
Arg
CCG
[ENA]
¡û
>W1810368903
PWAA01000011
Alphaproteobacteria
Thalassobius sp. I31.1 [PWAA]
198900
198824
-
Arg
CCG
[ENA]
¡û
>W1810503370
QBKA01000002
Alphaproteobacteria
Alteripontixanthobacter maritimus HME9302 [QBKA]
2447621
2447697
+
Arg
CCG
[ENA]
¡û
>W1810676762
QKMF01000007
Alphaproteobacteria
Pelagimonas varians DSM 23678 [QKMF]
5687
5611
-
Arg
CCG
[ENA]
¡û
>C121006718
CP003147
Alphaproteobacteria
Pseudovibrio sp. FO-BEG1 [CP003147]
485205
485129
-
Arg
CCG
[Ensembl]
¡û
>C161001444
AP014800
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 2351 [AP014800]
2375209
2375285
+
Arg
CCG
[Ensembl]
¡û
>W1610042873
BAZK01000012
Alphaproteobacteria
Pseudovibrio denitrificans JCM 12308 [BAZK]
32701
32777
+
Arg
CCG
[ENA]
¡û
>W1610093018
CYSG01000011
Alphaproteobacteria
Phaeobacter sp. CECT 5382 [CYSG]
96288
96364
+
Arg
CCG
[ENA]
¡û
>W1610716083
LLWE01000024
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
447280
447356
+
Arg
CCG
[ENA]
¡û
>W1710040033
BAZK01000012
Alphaproteobacteria
Pseudovibrio denitrificans JCM 12308 [BAZK]
32701
32777
+
Arg
CCG
[ENA]
¡û
>W1710508106
FMVT01000011
Alphaproteobacteria
Paracoccus tibetensis [FMVT]
15949
16025
+
Arg
CCG
[ENA]
¡û
>W1710515189
FNBP01000005
Alphaproteobacteria
Sulfitobacter delicatus [FNBP]
20191
20115
-
Arg
CCG
[ENA]
¡û
>W1710531624
FNPR01000002
Alphaproteobacteria
Lentibacter algarum [FNPR]
724730
724806
+
Arg
CCG
[ENA]
¡û
>W1710562056
FOOR01000002
Alphaproteobacteria
Novosphingobium sp. CF614 [FOOR]
18149
18225
+
Arg
CCG
[ENA]
¡û
>W1710577880
FPBD01000003
Alphaproteobacteria
Pseudovibrio denitrificans [FPBD]
455973
455897
-
Arg
CCG
[ENA]
¡û
>W1710583489
FQUV01000002
Alphaproteobacteria
Litoreibacter ascidiaceicola [FQUV]
426879
426955
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK