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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179689 (107 seq.)
>W1710853372
LLWP01000003
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
136909
136833
-
Asp
GTC
[ENA]
¡û
>W1710889306
LNAL01000006
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
1157128
1157202
+
Asp
GTC
[ENA]
¡û
>W1710889307
LNAL01000006
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
1157706
1157780
+
Asp
GTC
[ENA]
¡û
>W1711043792
LRML01000006
Bacteroidota
Rufibacter roseus [LRML]
285560
285636
+
Asp
GTC
[ENA]
¡û
>W1711043793
LRML01000006
Bacteroidota
Rufibacter roseus [LRML]
285833
285909
+
Asp
GTC
[ENA]
¡û
>W1711043844
LRMM01000064
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
9606
9682
+
Asp
GTC
[ENA]
¡û
>W1711043845
LRMM01000064
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
10556
10632
+
Asp
GTC
[ENA]
¡û
>W1711392000
MENC01000110
Bacteroidota
Bacteroidetes bacterium GWA2_30_7 [MENC]
10726
10802
+
Asp
GTC
[ENA]
¡û
>W1711392021
MEND01000058
Bacteroidota
Bacteroidetes bacterium GWA2_31_9 [MEND]
5624
5700
+
Asp
GTC
[ENA]
¡û
>W131180763
ARNJ01000060
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
64777
64853
+
Asp
GTC
[ENA]
¡û
>W131180764
ARNJ01000060
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
65605
65681
+
Asp
GTC
[ENA]
¡û
>W131215984
ATVL01000009
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
545777
545701
-
Asp
GTC
[ENA]
¡û
>W131215985
ATVL01000009
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
544323
544247
-
Asp
GTC
[ENA]
¡û
>W1711713051
MTCR01000143
Bacteroidota
Sphingobacteriales bacterium TSM_CSM [MTCR]
69847
69923
+
Asp
GTC
[ENA]
¡û
>W1711726883
MTSE01000014
Bacteroidota
Hymenobacter crusticola MIMBbqt21 [MTSE]
48513
48587
+
Asp
GTC
[ENA]
¡û
>W1711726884
MTSE01000014
Bacteroidota
Hymenobacter crusticola MIMBbqt21 [MTSE]
49028
49104
+
Asp
GTC
[ENA]
¡û
>W1711767874
MVBC01000004
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
204320
204394
+
Asp
GTC
[ENA]
¡û
>W1711767875
MVBC01000004
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
205933
206007
+
Asp
GTC
[ENA]
¡û
>W1711945929
NBMY01000124
Bacteroidota
Sphingobacteriales bacterium TSM_CSS [NBMY]
16427
16503
+
Asp
GTC
[ENA]
¡û
>W1712105588
NIRR01000033
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
41514
41590
+
Asp
GTC
[ENA]
¡û
>W1712105589
NIRR01000033
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
41938
42014
+
Asp
GTC
[ENA]
¡û
>C171037538
CP015317
Bacteroidota
Fibrella sp. ES10-3-2-2 [CP015317]
3384342
3384418
+
Asp
GTC
-
¡û
>WENV180248825
OBEQ010144282
[OBEQ] groundwater metagenome; groundwater
11710
11636
-
Asp
GTC
[ENA]
¢þ
>WENV181367292
OFPZ01000551
[OFPZ] freshwater metagenome; Freshwater Lake
1044
970
-
Asp
GTC
[ENA]
¢þ
>W141151947
AXBK01000013
Bacteroidota
Adhaeribacter aquaticus DSM 16391 [AXBK]
607764
607688
-
Asp
GTC
[ENA]
¡û
>W141151948
AXBK01000013
Bacteroidota
Adhaeribacter aquaticus DSM 16391 [AXBK]
602630
602554
-
Asp
GTC
[ENA]
¡û
>WENV181852512
OGWF01032518
[OGWF] freshwater metagenome; freshwater
294
218
-
Asp
GTC
[ENA]
¢þ
>WENV183737805
PJUD01035315
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
484
558
+
Asp
GTC
[ENA]
¢þ
>WENV183742526
PJUI01000007
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
727429
727503
+
Asp
GTC
[ENA]
¢þ
>WENV183746573
POYE01019322
[POYE] biofilm metagenome; steel pipe from biofilm reactor
243
169
-
Asp
GTC
[ENA]
¢þ
>ENV08001299
ABMW01008873
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
123
47
-
Asp
GTC
[ENA]
¡û
>ENV08001368
ABMW01188968
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
13
89
+
Asp
GTC
[ENA]
¡û
>WENV170006037
AMQJ01016852
[AMQJ] sediment metagenome; subsurface aquifer sediment
12670
12594
-
Asp
GTC
[ENA]
¢þ
>WENV170551108
CXWJ01000199
[CXWJ] wastewater metagenome; activated sludge
93662
93738
+
Asp
GTC
[ENA]
¢þ
>WENV170640780
JFJP01024503
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
8215
8139
-
Asp
GTC
[ENA]
¢þ
>WENV170641815
JFJP01037721
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
21364
21440
+
Asp
GTC
[ENA]
¢þ
>WENV170641912
JFJP01038129
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1304
1380
+
Asp
GTC
[ENA]
¢þ
>WENV170642794
JFJP01044960
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
6530
6604
+
Asp
GTC
[ENA]
¢þ
>WENV170650486
JRYE01001445
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
2041
1965
-
Asp
GTC
[ENA]
¢þ
>WENV170991487
MWWA01211167
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
91
167
+
Asp
GTC
[ENA]
¢þ
>C191154897
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
1986084
1986010
-
Asp
GTC
-
¡û
>C191183811
CP040896
Bacteroidota
Hymenobacter jejuensis 17J68-5 [CP040896]
4327637
4327563
-
Asp
GTC
-
¡û
>W1910547398
FZNS01000004
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
8589
8663
+
Asp
GTC
[ENA]
¡û
>W1910547399
FZNS01000004
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
8983
9057
+
Asp
GTC
[ENA]
¡û
>W1911496571
OCMT01000004
Bacteroidota
Pedobacter xixiisoli CGMCC 1.12803 [OCMT]
574169
574243
+
Asp
GTC
[ENA]
¡û
>W1911788137
QYCN01000003
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
243178
243104
-
Asp
GTC
[ENA]
¡û
>W1911788138
QYCN01000003
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
242806
242732
-
Asp
GTC
[ENA]
¡û
>SRA1001406
SRR001064.162770
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000152)
13
89
+
Asp
GTC
[SRA]
>SRA1001428
SRR001064.265091
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000152)
123
47
-
Asp
GTC
[SRA]
>W1810089877
PGFA01000001
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
2451194
2451268
+
Asp
GTC
[ENA]
¡û
>W1810089878
PGFA01000001
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
2452304
2452378
+
Asp
GTC
[ENA]
¡û
>W1810173070
PJMU01000001
Bacteroidota
Pontibacter ramchanderi LP43 [PJMU]
346157
346083
-
Asp
GTC
[ENA]
¡û
>SRA1003729
SRR002327.146935
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
98
174
+
Asp
GTC
[SRA]
>W1810389940
PXYE01000001
Bacteroidota
Sphingobacteriales bacterium UPWRP_1 [PXYE]
69847
69921
+
Asp
GTC
[ENA]
¡û
>W1810389991
PXYE01000128
Bacteroidota
Sphingobacteriales bacterium UPWRP_1 [PXYE]
16427
16501
+
Asp
GTC
[ENA]
¡û
>W1810400061
PYFT01000001
Bacteroidota
Adhaeribacter arboris HMF7605 [PYFT]
6900510
6900584
+
Asp
GTC
[ENA]
¡û
>W1810483264
QASA01000001
Bacteroidota
Adhaeribacter pallidiroseus HMF7616 [QASA]
2301165
2301239
+
Asp
GTC
[ENA]
¡û
>W1810625881
QHKM01000001
Bacteroidota
Hymenobacter edaphi NL [QHKM]
1264050
1263976
-
Asp
GTC
[ENA]
¡û
>W1810625882
QHKM01000001
Bacteroidota
Hymenobacter edaphi NL [QHKM]
1262604
1262530
-
Asp
GTC
[ENA]
¡û
>W1810678986
QKNS01000009
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
143569
143495
-
Asp
GTC
[ENA]
¡û
>W1810678987
QKNS01000009
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
143087
143013
-
Asp
GTC
[ENA]
¡û
>W1810701245
QMDV01000002
Bacteroidota
Pontibacter arcticus 2b14 [QMDV]
812965
813039
+
Asp
GTC
[ENA]
¡û
>W1810701246
QMDV01000002
Bacteroidota
Pontibacter arcticus 2b14 [QMDV]
813097
813171
+
Asp
GTC
[ENA]
¡û
>W1810704228
QMHN01000003
Bacteroidota
Pedobacter chitinilyticus CM134L-2 [QMHN]
598688
598762
+
Asp
GTC
[ENA]
¡û
>W1810704250
QMHO01000001
Bacteroidota
Pedobacter nanyangensis Q-4 [QMHO]
723608
723682
+
Asp
GTC
[ENA]
¡û
>W1810704312
QMHP01000007
Bacteroidota
Nubsella zeaxanthinifaciens TDMA-5 [QMHP]
90236
90162
-
Asp
GTC
[ENA]
¡û
>W1810912367
QVLT01000003
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
93469
93395
-
Asp
GTC
[ENA]
¡û
>W1810912368
QVLT01000003
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
93043
92969
-
Asp
GTC
[ENA]
¡û
>C151009424
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
3933649
3933573
-
Asp
GTC
[Ensembl]
¡û
>C151009425
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
3927317
3927241
-
Asp
GTC
[Ensembl]
¡û
>C151017357
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
2726268
2726344
+
Asp
GTC
[Ensembl]
¡û
>C151017358
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
2726655
2726731
+
Asp
GTC
[Ensembl]
¡û
>C151063990
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
2551415
2551491
+
Asp
GTC
[Ensembl]
¡û
>C151071900
CP010777
Bacteroidota
Rufibacter radiotolerans DG31D [CP010777]
1604144
1604068
-
Asp
GTC
[Ensembl]
¡û
>C151071901
CP010777
Bacteroidota
Rufibacter radiotolerans DG31D [CP010777]
1603851
1603775
-
Asp
GTC
[Ensembl]
¡û
>C151096227
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
1296766
1296690
-
Asp
GTC
-
¡û
>W1510015898
BBRT01000190
Bacteroidota
Candidatus Symbiothrix dinenymphae dinenymphae B4-10h [BBRT]
9881
9957
+
Asp
GTC
[ENA]
¡û
>W1510015919
BBRV01000001
Bacteroidota
Candidatus Symbiothrix dinenymphae dinenymphae C9-6h [BBRV]
27374
27450
+
Asp
GTC
[ENA]
¡û
>C11117751
CP002345
Bacteroidota
Paludibacter propionicigenes WB4 [CP002345]
3474236
3474312
+
Asp
GTC
[Ensembl]
¡û
>W1511543329
JZIR01000105
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
8486
8562
+
Asp
GTC
[ENA]
¡û
>C161028421
CP010776
Bacteroidota
Rufibacter sp. DG15C [CP010776]
3599191
3599267
+
Asp
GTC
[Ensembl]
¡û
>C161028422
CP010776
Bacteroidota
Rufibacter sp. DG15C [CP010776]
3600600
3600676
+
Asp
GTC
[Ensembl]
¡û
>C161043264
CP012643
Bacteroidota
Rufibacter tibetensis 1351 [CP012643]
4308620
4308544
-
Asp
GTC
[Ensembl]
¡û
>C161043265
CP012643
Bacteroidota
Rufibacter tibetensis 1351 [CP012643]
4303829
4303755
-
Asp
GTC
[Ensembl]
¡û
>W1610574582
JZQW01000030
Bacteroidota
Candidatus Parvibacillus calidus OLB8 [JZQW]
11165
11089
-
Asp
GTC
[ENA]
¡û
>W1610716496
LLWP01000003
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
136909
136833
-
Asp
GTC
[ENA]
¡û
>W1610749684
LNAL01000006
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
1157128
1157202
+
Asp
GTC
[ENA]
¡û
>W1610749685
LNAL01000006
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
1157706
1157780
+
Asp
GTC
[ENA]
¡û
>W1610885091
LRML01000006
Bacteroidota
Rufibacter roseus [LRML]
285560
285636
+
Asp
GTC
[ENA]
¡û
>W1610885092
LRML01000006
Bacteroidota
Rufibacter roseus [LRML]
285833
285909
+
Asp
GTC
[ENA]
¡û
>W1610885143
LRMM01000064
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
9606
9682
+
Asp
GTC
[ENA]
¡û
>W1610885144
LRMM01000064
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
10556
10632
+
Asp
GTC
[ENA]
¡û
>W1710511330
FMYP01000007
Bacteroidota
Williamwhitmania taraxaci A7P-90m [FMYP]
77041
77115
+
Asp
GTC
[ENA]
¡û
>W1710511331
FMYP01000007
Bacteroidota
Williamwhitmania taraxaci A7P-90m [FMYP]
77149
77225
+
Asp
GTC
[ENA]
¡û
>W1710530539
FNOV01000001
Bacteroidota
Hymenobacter psychrophilus [FNOV]
483280
483356
+
Asp
GTC
[ENA]
¡û
>W1710530540
FNOV01000001
Bacteroidota
Hymenobacter psychrophilus [FNOV]
484215
484291
+
Asp
GTC
[ENA]
¡û
>W1710553579
FOHS01000002
Bacteroidota
Hymenobacter actinosclerus [FOHS]
143823
143747
-
Asp
GTC
[ENA]
¡û
>W1710553580
FOHS01000002
Bacteroidota
Hymenobacter actinosclerus [FOHS]
142892
142816
-
Asp
GTC
[ENA]
¡û
>W1710587473
FQYN01000005
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
116061
116137
+
Asp
GTC
[ENA]
¡û
>W1710587474
FQYN01000005
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
116391
116467
+
Asp
GTC
[ENA]
¡û
>W1710590102
FRAS01000005
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
195603
195527
-
Asp
GTC
[ENA]
¡û
>W1710590103
FRAS01000005
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
148871
148795
-
Asp
GTC
[ENA]
¡û
>W1710600012
FTPP01000001
Bacteroidota
Pontibacter indicus [FTPP]
817551
817477
-
Asp
GTC
[ENA]
¡û
>W1710605427
FWWW01000088
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
4046
3970
-
Asp
GTC
[ENA]
¡û
>W1710610162
FYEW01000001
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
688897
688821
-
Asp
GTC
[ENA]
¡û
>W1710610163
FYEW01000001
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
688449
688373
-
Asp
GTC
[ENA]
¡û
>W1710691817
JZQW01000030
Bacteroidota
Candidatus Parvibacillus calidus OLB8 [JZQW]
11165
11089
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK