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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179693 (42 seq.)
>W1710853360
LLWP01000001
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
913480
913554
+
Met
CAT
[ENA]
¡û
>W1710889317
LNAL01000007
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
749959
749885
-
Met
CAT
[ENA]
¡û
>W131180768
ARNJ01000063
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
61805
61731
-
Met
CAT
[ENA]
¡û
>W131215976
ATVL01000008
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
120186
120260
+
Met
CAT
[ENA]
¡û
>W1711377605
MDZB01000109
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
115792
115866
+
Met
CAT
[ENA]
¡û
>W1711377619
MDZC01000010
Bacteroidota
Hymenobacter glacialis CCM 8648 [MDZC]
14870
14944
+
Met
CAT
[ENA]
¡û
>W1711726866
MTSE01000003
Bacteroidota
Hymenobacter crusticola MIMBbqt21 [MTSE]
339486
339562
+
Met
CAT
[ENA]
¡û
>W1711767889
MVBC01000011
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
79880
79806
-
Met
CAT
[ENA]
¡û
>W1712105579
NIRR01000016
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
12810
12884
+
Met
CAT
[ENA]
¡û
>WENV170999118
MWWJ01241506
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
101
177
+
Met
CAT
[ENA]
¢þ
>WENV170999498
MWWK01072727
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
219
143
-
Met
CAT
[ENA]
¢þ
>C191087856
CP032317
Bacteroidota
Hymenobacter oligotrophus sh-6 [CP032317]
1095002
1095076
+
Met
CAT
-
¡û
>C191154879
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
2447789
2447863
+
Met
CAT
-
¡û
>C191183807
CP040896
Bacteroidota
Hymenobacter jejuensis 17J68-5 [CP040896]
4589769
4589843
+
Met
CAT
-
¡û
>W141734729
JNLX01000165
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
69540
69614
+
Met
CAT
[ENA]
¡û
>W1910547378
FZNS01000001
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
281569
281643
+
Met
CAT
[ENA]
¡û
>W1910651888
LYMU01000045
Bacteroidota
Hymenobacter sp. UV11 [LYMU]
194996
195070
+
Met
CAT
[ENA]
¡û
>W1911788135
QYCN01000002
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
158112
158186
+
Met
CAT
[ENA]
¡û
>W1810089884
PGFA01000001
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
2115169
2115095
-
Met
CAT
[ENA]
¡û
>W1810625884
QHKM01000001
Bacteroidota
Hymenobacter edaphi NL [QHKM]
994893
994819
-
Met
CAT
[ENA]
¡û
>W1810678980
QKNS01000006
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
144995
144921
-
Met
CAT
[ENA]
¡û
>W1810694549
QLMC01000002
Bacteroidota
Larkinella arboricola DSM 21851 [QLMC]
894246
894172
-
Met
CAT
[ENA]
¡û
>W1810745138
QOWE01000010
Bacteroidota
Larkinella punicea zzj9 [QOWE]
105976
105902
-
Met
CAT
[ENA]
¡û
>W1810912385
QVLT01000017
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
62307
62233
-
Met
CAT
[ENA]
¡û
>SRA1014687
SRR023845.263639
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
168
92
-
Met
CAT
[SRA]
>C151009419
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
4302064
4302138
+
Met
CAT
[Ensembl]
¡û
>C151017382
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
2411201
2411127
-
Met
CAT
[Ensembl]
¡û
>C151064008
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
2339564
2339490
-
Met
CAT
[Ensembl]
¡û
>C151096201
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
1490175
1490249
+
Met
CAT
-
¡û
>W1511543319
JZIR01000069
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
10499
10573
+
Met
CAT
[ENA]
¡û
>C161061556
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
3563074
3563148
+
Met
CAT
[Ensembl]
¡û
>C161077140
CP014771
Bacteroidota
Hymenobacter sp. PAMC 26554 [CP014771]
634489
634415
-
Met
CAT
[Ensembl]
¡û
>W1610716484
LLWP01000001
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
913480
913554
+
Met
CAT
[ENA]
¡û
>W1610749695
LNAL01000007
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
749959
749885
-
Met
CAT
[ENA]
¡û
>W1710530570
FNOV01000010
Bacteroidota
Hymenobacter psychrophilus [FNOV]
33988
33914
-
Met
CAT
[ENA]
¡û
>W1710553570
FOHS01000002
Bacteroidota
Hymenobacter actinosclerus [FOHS]
463221
463295
+
Met
CAT
[ENA]
¡û
>W1710563363
FOPP01000010
Bacteroidota
Pedobacter insulae [FOPP]
110102
110026
-
Met
CAT
[ENA]
¡û
>W1710573722
FOXS01000001
Bacteroidota
Hymenobacter arizonensis [FOXS]
921547
921621
+
Met
CAT
[ENA]
¡û
>W1710587481
FQYN01000007
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
256964
256890
-
Met
CAT
[ENA]
¡û
>W1710590127
FRAS01000036
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
889
963
+
Met
CAT
[ENA]
¡û
>W1710605429
FWWW01000095
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
58289
58363
+
Met
CAT
[ENA]
¡û
>W1710610148
FYEW01000001
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
983472
983548
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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