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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179706 (68 seq.)
>W1711434401
MIMZ01000006
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
61516
61440
-
Met
CAT
[ENA]
¡û
>C171101783
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
2606556
2606632
+
Met
CAT
-
¡û
>WENV180176760
OAWD01000924
[OAWD] human gut metagenome; faeces
11729
11653
-
Ile2
CAT
[ENA]
¢þ
>WENV180341909
OBLI01274383
[OBLI] pig gut metagenome; faeces
111
187
+
Ile2
CAT
[ENA]
¢þ
>WENV180498592
OCAG01000578
[OCAG] human gut metagenome; faeces
22538
22614
+
Ile2
CAT
[ENA]
¢þ
>WENV180539559
OCHP01045541
[OCHP] human gut metagenome; human gut
436
512
+
Ile2
CAT
[ENA]
¢þ
>WENV180631803
OCQY01071381
[OCQY] human gut metagenome; human gut
151
75
-
Ile2
CAT
[ENA]
¢þ
>WENV180665666
OCVV011192560
[OCVV] gut metagenome; gut
1320
1396
+
Ile2
CAT
[ENA]
¢þ
>WENV180665668
OCVV011192560
[OCVV] gut metagenome; gut
1320
1396
+
Ile2
CAT
[ENA]
¢þ
>WENV180746950
ODHN01001067
[ODHN] human metagenome; G_DNA_Stool
3803
3879
+
Ile2
CAT
[ENA]
¢þ
>WENV180870808
ODLN01006365
[ODLN] human metagenome; G_DNA_Stool
368
444
+
Ile2
CAT
[ENA]
¢þ
>WENV180926736
ODTL01029970
[ODTL] human metagenome; G_DNA_Stool
486
562
+
Ile2
CAT
[ENA]
¢þ
>WENV181056870
ODYJ01044827
[ODYJ] human metagenome; G_DNA_Stool
507
431
-
Ile2
CAT
[ENA]
¢þ
>WENV181062126
ODYN01061329
[ODYN] human metagenome; G_DNA_Stool
236
160
-
Ile2
CAT
[ENA]
¢þ
>WENV181149763
OEHT01258588
[OEHT] human metagenome; G_DNA_Stool
136
60
-
Ile2
CAT
[ENA]
¢þ
>WENV181330978
OFLZ01000299
[OFLZ] human gut metagenome; human gut
39966
40042
+
Ile2
CAT
[ENA]
¢þ
>WENV181342645
OFMI01037066
[OFMI] human gut metagenome; human gut
334
258
-
Ile2
CAT
[ENA]
¢þ
>WENV181442073
OGDN01045637
[OGDN] human gut metagenome; human gut
780
704
-
Ile2
CAT
[ENA]
¢þ
>WENV181450762
OGDY01001310
[OGDY] metagenome; Human gut stool
28243
28167
-
Ile2
CAT
[ENA]
¢þ
>W141145916
AWVB01000024
Bacillota
Peptostreptococcaceae bacterium oral taxon 113 oral taxon 113 str. W5053 [AWVB]
1395
1471
+
Met
CAT
[ENA]
¡û
>WENV181526301
OGHJ01004854
[OGHJ] metagenome; Human gut stool
541
617
+
Ile2
CAT
[ENA]
¢þ
>WENV181532085
OGHO01030724
[OGHO] metagenome; Human gut stool
27
103
+
Ile2
CAT
[ENA]
¢þ
>WENV181741629
OGQK01000878
[OGQK] human gut metagenome; faeces
6819
6895
+
Ile2
CAT
[ENA]
¢þ
>WENV181752538
OGQQ01007411
[OGQQ] human gut metagenome; faeces
362
438
+
Ile2
CAT
[ENA]
¢þ
>WENV181769624
OGRA01061848
[OGRA] human gut metagenome; faeces
310
234
-
Ile2
CAT
[ENA]
¢þ
>WENV181795919
OGRT01001845
[OGRT] human gut metagenome; faeces
13438
13362
-
Ile2
CAT
[ENA]
¢þ
>WENV181914437
OGYF01000242
[OGYF] human gut metagenome; faeces
3737
3661
-
Ile2
CAT
[ENA]
¢þ
>WENV182135937
OHKJ01014043
[OHKJ] human gut metagenome; feces
536
460
-
Ile2
CAT
[ENA]
¢þ
>WENV182166526
OHMP01022545
[OHMP] human gut metagenome; feces
434
510
+
Ile2
CAT
[ENA]
¢þ
>WENV182405288
OIEV01002298
[OIEV] human gut metagenome; human gut
5345
5269
-
Ile2
CAT
[ENA]
¢þ
>WENV182514904
OIWM01046078
[OIWM] human gut metagenome; faeces
591
515
-
Ile2
CAT
[ENA]
¢þ
>WENV182524625
OIWT01000401
[OIWT] human gut metagenome; faeces
1109
1185
+
Ile2
CAT
[ENA]
¢þ
>WENV182622148
OJKJ01008090
[OJKJ] metagenome; faeces
1588
1664
+
Ile2
CAT
[ENA]
¢þ
>WENV182626858
OJKP01029424
[OJKP] metagenome; faeces
526
450
-
Ile2
CAT
[ENA]
¢þ
>WENV182748006
OJQW01000132
[OJQW] human gut metagenome; stool sample
11785
11861
+
Ile2
CAT
[ENA]
¢þ
>WENV182753367
OJRC01006373
[OJRC] human gut metagenome; stool sample
241
165
-
Ile2
CAT
[ENA]
¢þ
>WENV182882594
OKSB01000833
[OKSB] human gut metagenome; faeces
32324
32248
-
Ile2
CAT
[ENA]
¢þ
>WENV183039606
OLGB01010287
[OLGB] human gut metagenome; faeces
482
558
+
Ile2
CAT
[ENA]
¢þ
>WENV183094695
OLND01000082
[OLND] human gut metagenome; faeces
49043
48967
-
Ile2
CAT
[ENA]
¢þ
>WENV183112044
OLNP01000037
[OLNP] human gut metagenome; faeces
52108
52184
+
Ile2
CAT
[ENA]
¢þ
>WENV183115940
OLNQ01031063
[OLNQ] human gut metagenome; faeces
1368
1292
-
Ile2
CAT
[ENA]
¢þ
>WENV183124988
OLNW01097782
[OLNW] human gut metagenome; faeces
485
409
-
Ile2
CAT
[ENA]
¢þ
>WENV183160809
OLOV01000998
[OLOV] human gut metagenome; faeces
22651
22575
-
Ile2
CAT
[ENA]
¢þ
>WENV183229857
OLQT01000001
[OLQT] human gut metagenome; faeces
284330
284254
-
Ile2
CAT
[ENA]
¢þ
>WENV183233660
OLQV01002314
[OLQV] human gut metagenome; faeces
218
294
+
Ile2
CAT
[ENA]
¢þ
>WENV183243581
OLRD01000265
[OLRD] human gut metagenome; faeces
46124
46048
-
Ile2
CAT
[ENA]
¢þ
>WENV183247692
OLRF01006936
[OLRF] human gut metagenome; faeces
408
484
+
Ile2
CAT
[ENA]
¢þ
>WENV183268537
OLRU01007782
[OLRU] human gut metagenome; faeces
1120
1196
+
Ile2
CAT
[ENA]
¢þ
>WENV183280125
OLSB01002192
[OLSB] human gut metagenome; faeces
251
327
+
Ile2
CAT
[ENA]
¢þ
>WENV183294566
OLSK01034207
[OLSK] human gut metagenome; faeces
361
437
+
Ile2
CAT
[ENA]
¢þ
>WENV183426412
OMBL01014534
[OMBL] human gut metagenome; feces
229
305
+
Ile2
CAT
[ENA]
¢þ
>WENV183634696
OOIG01096988
[OOIG] human gut metagenome; human gut
282
206
-
Ile2
CAT
[ENA]
¢þ
>WENV183655732
OQWD01064848
[OQWD] human gut metagenome; human gut
376
452
+
Ile2
CAT
[ENA]
¢þ
>WENV183774052
PPYF01029202
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1242
1318
+
Ile2
CAT
[ENA]
¢þ
>WENV170070341
CDZQ01021918
[CDZQ] gut metagenome; human stools
112455
112379
-
Met
CAT
[ENA]
¢þ
>WENV170776817
LXOW01212030
[LXOW] bovine gut metagenome; Cow rumen
10144
10068
-
Met
CAT
[ENA]
¢þ
>C191064409
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3745190
3745266
+
Met
CAT
-
¡û
>C191219484
LR215983
Bacillota
Eubacterium limosum [LR215983]
223316
223392
+
Met
CAT
-
¡û
>W1810609731
QGUD01000001
Bacillota
Eubacterium limosum 8486cho [QGUD]
65949
65873
-
Met
CAT
[ENA]
¡û
>W1810871729
QUDF01000007
Bacillota
Eubacterium sp. AM05-23 [QUDF]
222994
223070
+
Met
CAT
[ENA]
¡û
>C11108802
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
882516
882592
+
Met
CAT
[Ensembl]
¡û
>W1511480151
JWIS01000007
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
306
230
-
Met
CAT
[ENA]
¡û
>W11144132
AEQN01000007
Bacillota
Pseudoramibacter alactolyticus ATCC 23263 [AEQN]
150628
150704
+
Met
CAT
[ENA]
¡û
>W11174000
AFUH01000001
Bacillota
Peptoniphilus sp. oral taxon 375 oral taxon 375 str. F0436 [AFUH]
1821689
1821613
-
Met
CAT
[ENA]
¡û
>C161037796
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3305842
3305766
-
Met
CAT
[Ensembl]
¡û
>W1710525041
FNJF01000012
Bacillota
Eubacterium maltosivorans limosum [FNJF]
77785
77861
+
Met
CAT
[ENA]
¡û
>W1710571953
FOWI01000001
Bacillota
Eubacterium callanderi [FOWI]
665461
665537
+
Met
CAT
[ENA]
¡û
>W1710591295
FRBP01000009
Bacillota
Eubacterium callanderi [FRBP]
159412
159488
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK