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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179707 (24 seq.)
>W1711434404
MIMZ01000006
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
21097
21021
-
Arg
TCT
[ENA]
¡û
>C171101786
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
2651355
2651431
+
Arg
TCT
-
¡û
>WENV180176839
OAWD01002138
[OAWD] human gut metagenome; faeces
2288
2212
-
Arg
TCT
[ENA]
¢þ
>WENV180498548
OCAG01000396
[OCAG] human gut metagenome; faeces
2279
2203
-
Arg
TCT
[ENA]
¢þ
>WENV180504422
OCAN01002669
[OCAN] human gut metagenome; faeces
4263
4339
+
Arg
TCT
[ENA]
¢þ
>WENV180663807
OCVV011134453
[OCVV] gut metagenome; gut
227
303
+
Arg
TCT
[ENA]
¢þ
>WENV180663811
OCVV011134453
[OCVV] gut metagenome; gut
227
303
+
Arg
TCT
[ENA]
¢þ
>WENV182403350
OIET01003179
[OIET] human gut metagenome; human gut
501
425
-
Arg
TCT
[ENA]
¢þ
>WENV182405346
OIEV01003345
[OIEV] human gut metagenome; human gut
3363
3439
+
Arg
TCT
[ENA]
¢þ
>WENV182836554
OKFX01005194
[OKFX] human gut metagenome; human gut
336
412
+
Arg
TCT
[ENA]
¢þ
>WENV170725921
LSQX01361046
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
47013
47089
+
Arg
TCT
[ENA]
¢þ
>C191064412
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3776421
3776497
+
Arg
TCT
-
¡û
>C191219487
LR215983
Bacillota
Eubacterium limosum [LR215983]
267405
267481
+
Arg
TCT
-
¡û
>W1810609734
QGUD01000001
Bacillota
Eubacterium limosum 8486cho [QGUD]
21150
21074
-
Arg
TCT
[ENA]
¡û
>W1810871732
QUDF01000007
Bacillota
Eubacterium sp. AM05-23 [QUDF]
254089
254165
+
Arg
TCT
[ENA]
¡û
>C11108805
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
922938
923014
+
Arg
TCT
[Ensembl]
¡û
>W1511480177
JWIS01000018
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
21008
20932
-
Arg
TCT
[ENA]
¡û
>W11144137
AEQN01000009
Bacillota
Pseudoramibacter alactolyticus ATCC 23263 [AEQN]
15065
15141
+
Arg
TCT
[ENA]
¡û
>C161037799
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3274474
3274398
-
Arg
TCT
[Ensembl]
¡û
>W1710525049
FNJF01000028
Bacillota
Eubacterium maltosivorans limosum [FNJF]
20899
20823
-
Arg
TCT
[ENA]
¡û
>W1710530498
FNOU01000002
Bacillota
Eubacterium barkeri [FNOU]
46164
46088
-
Arg
TCT
[ENA]
¡û
>W1710533802
FNRK01000010
Bacillota
Eubacterium aggregans [FNRK]
37326
37250
-
Arg
TCT
[ENA]
¡û
>W1710571956
FOWI01000001
Bacillota
Eubacterium callanderi [FOWI]
700887
700963
+
Arg
TCT
[ENA]
¡û
>W1710591298
FRBP01000009
Bacillota
Eubacterium callanderi [FRBP]
199978
200054
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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