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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179738 (31 seq.)
>W1711065159
LSBO01000102
Bacillota
Candidatus Frackibacter sp. T328-2 T328-2 [LSBO]
7
83
+
Gly
TCC
[ENA]
¡û
>W1711065170
LSBO01000155
Bacillota
Candidatus Frackibacter sp. T328-2 T328-2 [LSBO]
760
836
+
Gly
TCC
[ENA]
¡û
>W131163379
AQZS01000003
Bacillota
Orenia marismortui DSM 5156 [AQZS]
339976
339900
-
Gly
TCC
[ENA]
¡û
>W131163386
AQZS01000004
Bacillota
Orenia marismortui DSM 5156 [AQZS]
169173
169097
-
Gly
TCC
[ENA]
¡û
>W131163428
AQZS01000015
Bacillota
Orenia marismortui DSM 5156 [AQZS]
320895
320819
-
Gly
TCC
[ENA]
¡û
>W131163447
AQZS01000019
Bacillota
Orenia marismortui DSM 5156 [AQZS]
1180
1256
+
Gly
TCC
[ENA]
¡û
>W131163458
AQZS01000021
Bacillota
Orenia marismortui DSM 5156 [AQZS]
159340
159264
-
Gly
TCC
[ENA]
¡û
>W141220867
AZYG01000037
Bacillota
Halonatronum saccharophilum DSM 13868 [AZYG]
7064
6988
-
Gly
TCC
[ENA]
¡û
>W141220878
AZYG01000037
Bacillota
Halonatronum saccharophilum DSM 13868 [AZYG]
5605
5529
-
Gly
TCC
[ENA]
¡û
>W141220885
AZYG01000042
Bacillota
Halonatronum saccharophilum DSM 13868 [AZYG]
303
227
-
Gly
TCC
[ENA]
¡û
>WENV170681454
LFFM01000973
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
20325
20249
-
Gly
TCC
[ENA]
¢þ
>WENV170681819
LFFM01003088
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
26
102
+
Gly
TCC
[ENA]
¢þ
>WENV170682272
LFFM01008448
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
5350
5274
-
Gly
TCC
[ENA]
¢þ
>C10100146
CP002105
Bacillota
Acetohalobium arabaticum DSM 5501 [CP002105]
539863
539939
+
Gly
TCC
[Ensembl]
¡û
>C10100164
CP002105
Bacillota
Acetohalobium arabaticum DSM 5501 [CP002105]
801517
801593
+
Gly
TCC
[Ensembl]
¡û
>C10100180
CP002105
Bacillota
Acetohalobium arabaticum DSM 5501 [CP002105]
1419564
1419488
-
Gly
TCC
[Ensembl]
¡û
>C131003425
CP003359
Bacillota
Halobacteroides halobius DSM 5150 [CP003359]
21125
21201
+
Gly
TCC
[Ensembl]
¡û
>C131003472
CP003359
Bacillota
Halobacteroides halobius DSM 5150 [CP003359]
1825729
1825653
-
Gly
TCC
[Ensembl]
¡û
>C131003481
CP003359
Bacillota
Halobacteroides halobius DSM 5150 [CP003359]
1824749
1824673
-
Gly
TCC
[Ensembl]
¡û
>W1610905948
LSBO01000102
Bacillota
Candidatus Frackibacter sp. T328-2 T328-2 [LSBO]
7
83
+
Gly
TCC
[ENA]
¡û
>W1610905959
LSBO01000155
Bacillota
Candidatus Frackibacter sp. T328-2 T328-2 [LSBO]
760
836
+
Gly
TCC
[ENA]
¡û
>W1710512897
FMZT01000007
Bacillota
Candidatus Frackibacter sp. WG11 alkaliacetigena [FMZT]
103429
103353
-
Gly
TCC
[ENA]
¡û
>W1710512907
FMZT01000012
Bacillota
Candidatus Frackibacter sp. WG11 alkaliacetigena [FMZT]
281
357
+
Gly
TCC
[ENA]
¡û
>W1710512923
FMZT01000023
Bacillota
Candidatus Frackibacter sp. WG11 alkaliacetigena [FMZT]
19569
19645
+
Gly
TCC
[ENA]
¡û
>W1710546166
FOCA01000003
Bacillota
Candidatus Frackibacter sp. WG12 alkaliacetigena [FOCA]
377
453
+
Gly
TCC
[ENA]
¡û
>W1710546183
FOCA01000007
Bacillota
Candidatus Frackibacter sp. WG12 alkaliacetigena [FOCA]
1125
1201
+
Gly
TCC
[ENA]
¡û
>W1710546204
FOCA01000023
Bacillota
Candidatus Frackibacter sp. WG12 alkaliacetigena [FOCA]
19461
19537
+
Gly
TCC
[ENA]
¡û
>W1710568642
FOTT01000010
Bacillota
Candidatus Frackibacter sp. WG13 alkaliacetigena [FOTT]
89544
89468
-
Gly
TCC
[ENA]
¡û
>W1710568647
FOTT01000012
Bacillota
Candidatus Frackibacter sp. WG13 alkaliacetigena [FOTT]
127
203
+
Gly
TCC
[ENA]
¡û
>W1710568663
FOTT01000024
Bacillota
Candidatus Frackibacter sp. WG13 alkaliacetigena [FOTT]
19677
19753
+
Gly
TCC
[ENA]
¡û
>W1710600479
FUWM01000011
Bacillota
Selenihalanaerobacter shriftii [FUWM]
71380
71304
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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