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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179817 (53 seq.)
>W1711513051
MLFK01000002
Bacteroidota
Flavobacterium johnsoniae [MLFK]
445852
445928
+
Ala
GGC
[ENA]
¡û
>C171063343
CP017479
Bacteroidota
Flavobacterium gilvum EM1308 [CP017479]
586221
586145
-
Ala
GGC
-
¡û
>W131229164
AUGO01000015
Bacteroidota
Flavobacterium soli DSM 19725 [AUGO]
7464
7540
+
Ala
GGC
[ENA]
¡û
>W131224687
AUCZ01000008
Bacteroidota
Flavobacterium suncheonense DSM 17707 [AUCZ]
172075
171999
-
Ala
GGC
[ENA]
¡û
>w015424
AAPD01000001
Bacteroidota
Flavobacteria bacterium BBFL7 [AAPD]
757506
757584
+
Ala
GGC
[ENA]
¡û
>W141238758
BBMJ01000001
Bacteroidota
Nonlabens ulvanivorans [BBMJ]
300769
300843
+
Ala
GGC
[ENA]
¡û
>W141238787
BBMK01000001
Bacteroidota
Nonlabens ulvanivorans [BBMK]
759087
759161
+
Ala
GGC
[ENA]
¡û
>W141238840
BBMM01000001
Bacteroidota
Nonlabens ulvanivorans [BBMM]
491018
491092
+
Ala
GGC
[ENA]
¡û
>W141289749
JARP01000001
Bacteroidota
Flavobacterium sp. KJJ [JARP]
1374562
1374638
+
Ala
GGC
[ENA]
¡û
>W141291496
JASY01000004
Bacteroidota
Flavobacterium chungangense LMG 26729 [JASY]
219793
219717
-
Ala
GGC
[ENA]
¡û
>WENV170288461
CERX01096199
[CERX] marine metagenome genome assembly TARA_068_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
369
293
-
Ala
GGC
[ENA]
¢þ
>WENV170470121
CEVF01154742
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
54846
54920
+
Ala
GGC
[ENA]
¢þ
>WENV170554494
CXWK01073194
[CXWK] wastewater metagenome; activated sludge
829
905
+
Ala
GGC
[ENA]
¢þ
>WENV170595925
FUFK012025129
[FUFK] metagenome; unknown
275
351
+
Ala
GGC
[ENA]
¢þ
>WENV170826375
MDSY01109418
[MDSY] marine metagenome; seawater
142892
142816
-
Ala
GGC
[ENA]
¢þ
>WENV170925772
MDTG01089602
[MDTG] marine metagenome; seawater
6384
6308
-
Ala
GGC
[ENA]
¢þ
>C181168516
CP028811
Bacteroidota
Flavobacterium magnum HYN0048 [CP028811]
961574
961500
-
Ala
GGC
-
¡û
>C181175179
CP029151
Bacteroidota
Dokdonia sp. Dokd-P16 [CP029151]
1378076
1378152
+
Ala
GGC
-
¡û
>C181175928
CP029187
Bacteroidota
Flavobacterium pallidum HYN0049 [CP029187]
979021
979095
+
Ala
GGC
-
¡û
>C191127226
CP034549
Bacteroidota
Nonlabens ponticola MJ115 [CP034549]
786789
786863
+
Ala
GGC
-
¡û
>W141727217
JNCP01000092
Bacteroidota
Flavobacterium gilvum EM1308 [JNCP]
32023
32099
+
Ala
GGC
[ENA]
¡û
>W141805216
JPJI01000032
Bacteroidota
Nonlabens ulvanivorans [JPJI]
341990
341916
-
Ala
GGC
[ENA]
¡û
>W1910183299
BJNP01000013
Bacteroidota
Flavobacterium flevense NBRC 14960 [BJNP]
49099
49023
-
Ala
GGC
[ENA]
¡û
>W1910785628
MQUC01000003
Bacteroidota
Nonlabens agnitus JCM 17109 [MQUC]
2376193
2376119
-
Ala
GGC
[ENA]
¡û
>W1910805297
MTPW01000001
Bacteroidota
Nonlabens arenilitoris KCTC 32109 [MTPW]
1568696
1568770
+
Ala
GGC
[ENA]
¡û
>W1910808871
MUGR01000068
Bacteroidota
Flavobacterium aquidurense DSM 18293 [MUGR]
4269
4343
+
Ala
GGC
[ENA]
¡û
>W1911139446
NOXX01000200
Bacteroidota
Flavobacterium aurantiibacter TH167 [NOXX]
26101
26175
+
Ala
GGC
[ENA]
¡û
>W1810356561
PVNA01000001
Bacteroidota
Nonlabens ulvanivorans DSM 22727 [PVNA]
341527
341453
-
Ala
GGC
[ENA]
¡û
>W1810365424
PVUB01000002
Bacteroidota
Flavobacterium granuli DSM 17797 [PVUB]
503926
504000
+
Ala
GGC
[ENA]
¡û
>W1810657748
QJHK01000012
Bacteroidota
Flavobacterium cheongpyeongense IMCC34759 [QJHK]
121615
121689
+
Ala
GGC
[ENA]
¡û
>W1810685950
QKZR01000001
Bacteroidota
Nonlabens dokdonensis DSM 17205 [QKZR]
1113136
1113062
-
Ala
GGC
[ENA]
¡û
>W1810761087
QPKV01000013
Bacteroidota
Pedobacter chinensis JDX94 [QPKV]
136199
136277
+
Ala
GGC
[ENA]
¡û
>W1810885472
QUNI01000014
Bacteroidota
Flavobacterium aquicola DSM 100880 [QUNI]
60601
60527
-
Ala
GGC
[ENA]
¡û
>W1510012974
BBNT01000001
Bacteroidota
Nonlabens ulvanivorans JCM 19275 [BBNT]
671925
671999
+
Ala
GGC
[ENA]
¡û
>C11111626
CP002528
Bacteroidota
Dokdonia sp. 4H-3-7-5 [CP002528]
1310215
1310139
-
Ala
GGC
[Ensembl]
¡û
>W1511390961
JSYN01000011
Bacteroidota
Pedobacter kyungheensis KACC 16221 [JSYN]
38357
38433
+
Ala
GGC
[ENA]
¡û
>C131001116
CP001397
Bacteroidota
Nonlabens dokdonensis DSW-6 [CP001397]
1333772
1333696
-
Ala
GGC
[Ensembl]
¡û
>W1610535051
JRLW01000005
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
37223
37299
+
Ala
GGC
[ENA]
¡û
>W1610584200
LBMJ01000001
Bacteroidota
Nonlabens sp. YIK11 [LBMJ]
362078
362004
-
Ala
GGC
[ENA]
¡û
>W1610588074
LDPE01000002
Bacteroidota
Maribacter dokdonensis DSW-8 [LDPE]
479174
479250
+
Ala
GGC
[ENA]
¡û
>W1710512304
FMZH01000012
Bacteroidota
Pedobacter soli [FMZH]
109886
109810
-
Ala
GGC
[ENA]
¡û
>W1710533298
FNRA01000005
Bacteroidota
Pedobacter hartonius [FNRA]
153370
153444
+
Ala
GGC
[ENA]
¡û
>W1710542913
FNZN01000002
Bacteroidota
Maribacter orientalis [FNZN]
624811
624735
-
Ala
GGC
[ENA]
¡û
>W1710555470
FOJM01000011
Bacteroidota
Pedobacter suwonensis [FOJM]
189785
189709
-
Ala
GGC
[ENA]
¡û
>W1710585057
FQWB01000001
Bacteroidota
Flavobacterium fluvii [FQWB]
340505
340429
-
Ala
GGC
[ENA]
¡û
>W1710585221
FQWF01000001
Bacteroidota
Flavobacterium micromati [FQWF]
289710
289786
+
Ala
GGC
[ENA]
¡û
>W1710585311
FQWG01000037
Bacteroidota
Flavobacterium frigidimaris [FQWG]
3363
3287
-
Ala
GGC
[ENA]
¡û
>W1710585725
FQWO01000006
Bacteroidota
Flavobacterium granuli [FQWO]
21946
22020
+
Ala
GGC
[ENA]
¡û
>W1710591939
FRCC01000002
Bacteroidota
Flavobacterium flevense [FRCC]
87623
87699
+
Ala
GGC
[ENA]
¡û
>W1710600189
FTPU01000017
Bacteroidota
Epilithonimonas bovis DSM 19482 [FTPU]
32385
32461
+
Ala
GGC
[ENA]
¡û
>W1710637287
JRLW01000005
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
37223
37299
+
Ala
GGC
[ENA]
¡û
>W1710703348
LBMJ01000001
Bacteroidota
Nonlabens sp. YIK11 [LBMJ]
362078
362004
-
Ala
GGC
[ENA]
¡û
>W1710707354
LDPE01000002
Bacteroidota
Maribacter dokdonensis DSW-8 [LDPE]
479174
479250
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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