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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179845 (90 seq.)
>W1710891815
LNDB01000008
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
69000
68924
-
Pro
CGG
[ENA]
¡û
>W1711342444
MCHF01000014
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
104089
104013
-
Pro
CGG
[ENA]
¡û
>W1711342445
MCHF01000014
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
101308
101232
-
Pro
CGG
[ENA]
¡û
>W131171175
ARGA01000058
Bacillota
Anaeromusa acidaminophila DSM 3853 [ARGA]
65974
65898
-
Pro
CGG
[ENA]
¡û
>W131162538
AQYY01000012
Bacillota
Dehalobacter sp. FTH1 [AQYY]
125405
125481
+
Pro
CGG
[ENA]
¡û
>W131231409
AUIL01000015
Bacillota
Sporomusa ovata DSM 2662 [AUIL]
74506
74582
+
Pro
CGG
[ENA]
¡û
>WENV180005997
FLRX01082019
[FLRX] metagenome; saliva
234
158
-
Pro
CGG
[ENA]
¢þ
>WENV180011109
FLSI01164411
[FLSI] metagenome; saliva
106
30
-
Pro
CGG
[ENA]
¢þ
>WENV180131306
OATG01007381
[OATG] human gut metagenome; faeces
160
84
-
Pro
CGG
[ENA]
¢þ
>WENV180148724
OAUK01001803
[OAUK] human gut metagenome; faeces
3951
3875
-
Pro
CGG
[ENA]
¢þ
>WENV180171126
OAVV01038271
[OAVV] human gut metagenome; faeces
237
161
-
Pro
CGG
[ENA]
¢þ
>WENV180189144
OAWX01010021
[OAWX] human gut metagenome; faeces
1339
1415
+
Pro
CGG
[ENA]
¢þ
>WENV180189207
OAWX01018894
[OAWX] human gut metagenome; faeces
444
368
-
Pro
CGG
[ENA]
¢þ
>WENV180333988
OBLF01003558
[OBLF] metagenome; feces
8153
8229
+
Pro
CGG
[ENA]
¢þ
>WENV180346302
OBLN01058411
[OBLN] sediment metagenome; sediment
138
62
-
Pro
CGG
[ENA]
¢þ
>WENV180413416
OBVB01000972
[OBVB] human gut metagenome; faeces
5338
5414
+
Pro
CGG
[ENA]
¢þ
>WENV180432319
OBWI01000889
[OBWI] human gut metagenome; faeces
6152
6228
+
Pro
CGG
[ENA]
¢þ
>WENV180484690
OBZI01001396
[OBZI] human gut metagenome; faeces
2092
2016
-
Pro
CGG
[ENA]
¢þ
>WENV180548419
OCIW01023169
[OCIW] human oral metagenome; human oral
31
107
+
Pro
CGG
[ENA]
¢þ
>WENV180705812
ODEJ01027493
[ODEJ] human metagenome; G_DNA_Tongue dorsum
237
313
+
Pro
CGG
[ENA]
¢þ
>W141074029
ASXP01000001
Bacillota
Sporomusa ovata DSM 2662 [ASXP]
1112773
1112697
-
Pro
CGG
[ENA]
¡û
>WENV180763488
ODIA01001193
[ODIA] human metagenome; G_DNA_Tongue dorsum
5339
5415
+
Pro
CGG
[ENA]
¢þ
>WENV180774296
ODIJ01016175
[ODIJ] human metagenome; G_DNA_Tongue dorsum
1527
1451
-
Pro
CGG
[ENA]
¢þ
>WENV180802133
ODJE01000304
[ODJE] human metagenome; G_DNA_Tongue dorsum
5342
5418
+
Pro
CGG
[ENA]
¢þ
>WENV180820265
ODJR01003461
[ODJR] human metagenome; G_DNA_Tongue dorsum
5887
5963
+
Pro
CGG
[ENA]
¢þ
>WENV180831138
ODKB01043125
[ODKB] human metagenome; G_DNA_Tongue dorsum
670
594
-
Pro
CGG
[ENA]
¢þ
>WENV180854503
ODKX01004515
[ODKX] human metagenome; G_DNA_Tongue dorsum
5645
5721
+
Pro
CGG
[ENA]
¢þ
>WENV180896799
ODNI01002405
[ODNI] human metagenome; G_DNA_Tongue dorsum
14
90
+
Pro
CGG
[ENA]
¢þ
>WENV180901714
ODOK01001859
[ODOK] human metagenome; G_DNA_Tongue dorsum
2081
2157
+
Pro
CGG
[ENA]
¢þ
>WENV180929650
ODTN01007643
[ODTN] human metagenome; G_DNA_Tongue dorsum
2047
2123
+
Pro
CGG
[ENA]
¢þ
>WENV180932319
ODTP01042821
[ODTP] human metagenome; G_DNA_Tongue dorsum
233
309
+
Pro
CGG
[ENA]
¢þ
>WENV180948587
ODUG01002212
[ODUG] human metagenome; G_DNA_Tongue dorsum
5645
5721
+
Pro
CGG
[ENA]
¢þ
>WENV180985309
ODVJ01002295
[ODVJ] human metagenome; G_DNA_Tongue dorsum
2118
2042
-
Pro
CGG
[ENA]
¢þ
>WENV181013721
ODWN01003128
[ODWN] human metagenome; G_DNA_Tongue dorsum
5644
5720
+
Pro
CGG
[ENA]
¢þ
>WENV181021945
ODWV01090037
[ODWV] human metagenome; G_DNA_Tongue dorsum
115
191
+
Pro
CGG
[ENA]
¢þ
>WENV181039076
ODXQ01009154
[ODXQ] human metagenome; G_DNA_Tongue dorsum
213
137
-
Pro
CGG
[ENA]
¢þ
>WENV181045566
ODXW01000492
[ODXW] human metagenome; G_DNA_Tongue dorsum
20078
20002
-
Pro
CGG
[ENA]
¢þ
>WENV181058179
ODYL01004709
[ODYL] human metagenome; G_DNA_Tongue dorsum
213
137
-
Pro
CGG
[ENA]
¢þ
>WENV181074145
OEAO01003717
[OEAO] human metagenome; G_DNA_Tongue dorsum
5898
5974
+
Pro
CGG
[ENA]
¢þ
>WENV181102172
OECT01001118
[OECT] human metagenome; G_DNA_Tongue dorsum
12125
12049
-
Pro
CGG
[ENA]
¢þ
>WENV181112862
OEEL01004372
[OEEL] human metagenome; G_DNA_Tongue dorsum
251
175
-
Pro
CGG
[ENA]
¢þ
>WENV181125374
OEFT01073388
[OEFT] human metagenome; G_DNA_Tongue dorsum
99
23
-
Pro
CGG
[ENA]
¢þ
>WENV181140189
OEGN01072447
[OEGN] human metagenome; G_DNA_Tongue dorsum
67
143
+
Pro
CGG
[ENA]
¢þ
>WENV181456893
OGEH01001219
[OGEH] metagenome; Human gut stool
10631
10707
+
Pro
CGG
[ENA]
¢þ
>WENV181459323
OGEK01016972
[OGEK] metagenome; Human gut stool
362
286
-
Pro
CGG
[ENA]
¢þ
>WENV181465287
OGEP01016314
[OGEP] metagenome; Human gut stool
1569
1645
+
Pro
CGG
[ENA]
¢þ
>WENV181501753
OGGI01001430
[OGGI] metagenome; Human gut stool
11722
11646
-
Pro
CGG
[ENA]
¢þ
>WENV181581370
OGKA01005685
[OGKA] metagenome; Human gut stool
4820
4896
+
Pro
CGG
[ENA]
¢þ
>WENV181933011
OGYS01000255
[OGYS] human gut metagenome; faeces
6946
7022
+
Pro
CGG
[ENA]
¢þ
>W141246585
CANE01000042
Bacillota
Dehalobacter restrictus E1 [CANE]
1706
1782
+
Pro
CGG
[ENA]
¡û
>W141246617
CANF01000051
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
1704
1780
+
Pro
CGG
[ENA]
¡û
>WENV182516784
OIWO01000316
[OIWO] human gut metagenome; faeces
2728
2652
-
Pro
CGG
[ENA]
¢þ
>WENV182593805
OJIU01005327
[OJIU] metagenome; faeces
1267
1343
+
Pro
CGG
[ENA]
¢þ
>WENV182889574
OKSF01000662
[OKSF] human gut metagenome; faeces
5545
5469
-
Pro
CGG
[ENA]
¢þ
>WENV182944340
OKVI01018183
[OKVI] human gut metagenome; human gut
146
222
+
Pro
CGG
[ENA]
¢þ
>WENV183046125
OLGE01072656
[OLGE] human gut metagenome; faeces
196
272
+
Pro
CGG
[ENA]
¢þ
>WENV183162709
OLOW01001584
[OLOW] human gut metagenome; faeces
15012
15088
+
Pro
CGG
[ENA]
¢þ
>WENV183375835
OLYA01019729
[OLYA] human gut metagenome; feces
698
622
-
Pro
CGG
[ENA]
¢þ
>WENV183434156
OMBX01044642
[OMBX] human gut metagenome; feces
148
72
-
Pro
CGG
[ENA]
¢þ
>WENV183667820
ORJL010683590
[ORJL] groundwater metagenome; groundwater
5620
5544
-
Pro
CGG
[ENA]
¢þ
>WENV183745842
POVV01001284
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
3151
3075
-
Pro
CGG
[ENA]
¢þ
>WENV183772506
PPYF01017126
[PPYF] human gut metagenome; stool from patient with Crohn's disease
426
502
+
Pro
CGG
[ENA]
¢þ
>WENV170686543
LFRM01150158
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
71
147
+
Pro
CGG
[ENA]
¢þ
>WENV170976837
MTKZ01012924
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1554
1478
-
Pro
CGG
[ENA]
¢þ
>C191002385
AP018449
Bacillota
Methylomusa anaerophila MMFC1 [AP018449]
4258482
4258558
+
Pro
CGG
-
¡û
>W1910200197
FCOW01000001
Bacillota
Sporomusa sphaeroides DSM 2875 [FCOW]
327685
327761
+
Pro
CGG
[ENA]
¡û
>W1910212343
FMIW01000008
Bacillota
Acidaminococcus massiliensis Marseille-P2828 [FMIW]
110417
110493
+
Pro
CGG
[ENA]
¡û
>C141011768
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
1408724
1408648
-
Pro
CGG
[Ensembl]
¡û
>W1910639120
LSLL01000055
Bacillota
Sporomusa acidovorans DSM 3132 [LSLL]
57901
57825
-
Pro
CGG
[ENA]
¡û
>W1910647154
LXPC01000008
Bacillota
Dehalobacter sp. MCB1 [LXPC]
213882
213806
-
Pro
CGG
[ENA]
¡û
>W1911608683
PNXX01000004
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
213484
213408
-
Pro
CGG
[ENA]
¡û
>W1911613554
POSF01000015
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
130672
130748
+
Pro
CGG
[ENA]
¡û
>C151016360
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
1448851
1448775
-
Pro
CGG
[Ensembl]
¡û
>W1510586062
CTRP01000004
Bacillota
Sporomusa ovata An4 [CTRP]
144274
144198
-
Pro
CGG
[ENA]
¡û
>W1510755262
CYSP01000006
Bacillota
Propionispora sp. 2/2-37 Iso2/2 [CYSP]
192549
192473
-
Pro
CGG
[ENA]
¡û
>W1511187105
JMGA01000020
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
182547
182471
-
Pro
CGG
[ENA]
¡û
>W1511644743
LDXJ01000064
Bacillota
Peptococcaceae bacterium CEB3 [LDXJ]
373120
373044
-
Pro
CGG
[ENA]
¡û
>W11181336
AGJA01000002
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
226245
226169
-
Pro
CGG
[ENA]
¡û
>W11181387
AGJB01000002
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
81162
81238
+
Pro
CGG
[ENA]
¡û
>C121005957
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
3396023
3396099
+
Pro
CGG
[Ensembl]
¡û
>C121014802
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
2672324
2672400
+
Pro
CGG
[Ensembl]
¡û
>W121008453
AGCJ01000041
Bacillota
Anaeroglobus geminatus F0357 [AGCJ]
7932
8008
+
Pro
CGG
[ENA]
¡û
>W121010337
AGJE01000002
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
51822
51898
+
Pro
CGG
[ENA]
¡û
>C131008561
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
561346
561270
-
Pro
CGG
[Ensembl]
¡û
>C131008612
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
625790
625714
-
Pro
CGG
[Ensembl]
¡û
>C131003265
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
1961174
1961250
+
Pro
CGG
[Ensembl]
¡û
>W1610752180
LNDB01000008
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
69000
68924
-
Pro
CGG
[ENA]
¡û
>W1710513827
FNAM01000001
Bacillota
Sporomusa acidovorans [FNAM]
362890
362966
+
Pro
CGG
[ENA]
¡û
>W1710516468
FNCP01000010
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
108600
108676
+
Pro
CGG
[ENA]
¡û
>W1710605798
FWXI01000006
Bacillota
Sporomusa malonica [FWXI]
244841
244917
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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