This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179914 (45 seq.)
>W1711503747
MKTW01000012
Bacteroidota
Sphingobacteriales bacterium 44-61 [MKTW]
200370
200296
-
Pro
GGG
[ENA]
¡û
>W1711503798
MKTY01000014
Bacteroidota
Sphingobacteriales bacterium 46-32 [MKTY]
141087
141013
-
Pro
GGG
[ENA]
¡û
>W1711503868
MKUA01000001
Bacteroidota
Sphingobacteriales bacterium 48-107 [MKUA]
51669
51593
-
Pro
GGG
[ENA]
¡û
>W1711715367
MTFE01000010
Bacteroidota
Cnuella takakiae [MTFE]
3181055
3181131
+
Pro
GGG
[ENA]
¡û
>W131169999
ARFF01000006
Bacteroidota
Niabella aurantiaca DSM 17617 [ARFF]
137634
137710
+
Pro
GGG
[ENA]
¡û
>W131225628
AUDS01000028
Bacteroidota
Terrimonas ferruginea DSM 30193 [AUDS]
21020
20944
-
Pro
GGG
[ENA]
¡û
>WENV180039124
LLBY010028724
[LLBY] soil metagenome; soil from tomato rhizosphere
1
75
+
Pro
GGG
[ENA]
¢þ
>WENV180041078
LLBZ010041046
[LLBZ] soil metagenome; soil from tomato rhizosphere
2133
2207
+
Pro
GGG
[ENA]
¢þ
>WENV181308422
OFIS01016943
[OFIS] sludge metagenome; sludge
379
453
+
Pro
GGG
[ENA]
¢þ
>WENV181312272
OFJB01068231
[OFJB] sludge metagenome; sludge
305
231
-
Pro
GGG
[ENA]
¢þ
>WENV181402513
OFTY01003010
[OFTY] sludge metagenome; sludge
2740
2814
+
Pro
GGG
[ENA]
¢þ
>WENV181402569
OFTY01004530
[OFTY] sludge metagenome; sludge
75
-1
-
Pro
GGG
[ENA]
¢þ
>WENV181852110
OGWF01005153
[OGWF] freshwater metagenome; freshwater
1229
1304
+
Pro
GGG
[ENA]
¢þ
>WENV181854584
OGWK01007582
[OGWK] freshwater metagenome; freshwater
792
869
+
Pro
GGG
[ENA]
¢þ
>WENV183731788
PJTT01000182
[PJTT] soil metagenome; Soil (2) enriched on wood chips
75825
75751
-
Pro
GGG
[ENA]
¢þ
>WENV183740947
PJUF01020390
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
860
934
+
Pro
GGG
[ENA]
¢þ
>WENV183743519
PJUJ01003521
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
1693
1617
-
Pro
GGG
[ENA]
¢þ
>WENV183744745
PJUL01000166
[PJUL] feces metagenome; Chicken feces enriched on filter paper
18719
18795
+
Pro
GGG
[ENA]
¢þ
>ENV08001342
ABMW01085841
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
87
11
-
Pro
GGG
[ENA]
¡û
>WENV170009321
APMI01000072
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1179705
1179631
-
Pro
GGG
[ENA]
¢þ
>WENV170009414
APMI01000190
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
44066
43992
-
Pro
GGG
[ENA]
¢þ
>WENV170680871
LFEF01028623
[LFEF] freshwater metagenome; waterbloom
1754214
1754290
+
Pro
GGG
[ENA]
¢þ
>C181090221
CP023777
Bacteroidota
Chitinophaga caeni 13 [CP023777]
3324287
3324361
+
Pro
GGG
-
¡û
>C191085435
CP032157
Bacteroidota
Paraflavitalea soli 5GH32-13 [CP032157]
1073735
1073661
-
Pro
GGG
-
¡û
>W1911741157
QUZZ01000006
Bacteroidota
Taibaiella helva F-4 [QUZZ]
343864
343938
+
Pro
GGG
[ENA]
¡û
>W1911744263
QVNU01000001
Bacteroidota
Taibaiella koreensis THG-DT86 [QVNU]
1181381
1181307
-
Pro
GGG
[ENA]
¡û
>W1911775080
QXMH01000003
Bacteroidota
Chitinophaga alhagiae T22 [QXMH]
1931
1857
-
Pro
GGG
[ENA]
¡û
>W1911787328
QXZY01000001
Bacteroidota
Chitinophaga barathri YLT18 [QXZY]
636673
636599
-
Pro
GGG
[ENA]
¡û
>SRA1001366
SRR001064.11831
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000152)
87
11
-
Pro
GGG
[SRA]
>W1810400843
PYGK01000018
Bacteroidota
Chitinophaga ginsengisoli DSM 18107 [PYGK]
70406
70332
-
Pro
GGG
[ENA]
¡û
>W1810586421
QFFJ01000001
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
432144
432218
+
Pro
GGG
[ENA]
¡û
>W1810586522
QFFK01000007
Bacteroidota
Chitinophaga deserti XJ-2 [QFFK]
157536
157610
+
Pro
GGG
[ENA]
¡û
>W1810608350
QGTG01000003
Bacteroidota
Chitinophaga sp. S165 [QGTG]
661001
660927
-
Pro
GGG
[ENA]
¡û
>W1810693509
QLLL01000004
Bacteroidota
Chitinophaga skermanii DSM 23857 [QLLL]
587585
587659
+
Pro
GGG
[ENA]
¡û
>C151016391
CP007035
Bacteroidota
Niabella soli DSM 19437 JS13-8; DSM 19437 [CP007035]
1944928
1944852
-
Pro
GGG
[Ensembl]
¡û
>C10103758
CP001699
Bacteroidota
Chitinophaga pinensis DSM 2588 [CP001699]
4000210
4000136
-
Pro
GGG
[Ensembl]
¡û
>C161090554
CP015772
Bacteroidota
Niabella ginsenosidivorans BS26 [CP015772]
3081967
3081891
-
Pro
GGG
[Ensembl]
¡û
>W121017757
AGSA01000027
Bacteroidota
Niabella soli DSM 19437 [AGSA]
279174
279250
+
Pro
GGG
[ENA]
¡û
>W1710512661
FMZO01000002
Bacteroidota
Niabella drilacis [FMZO]
340518
340592
+
Pro
GGG
[ENA]
¡û
>W1710515149
FNBN01000007
Bacteroidota
Chitinophaga filiformis [FNBN]
228932
229008
+
Pro
GGG
[ENA]
¡û
>W1710544841
FOBB01000015
Bacteroidota
Chitinophaga rupis [FOBB]
64907
64833
-
Pro
GGG
[ENA]
¡û
>W1710583161
FQUO01000019
Bacteroidota
Cnuella takakiae [FQUO]
24352
24428
+
Pro
GGG
[ENA]
¡û
>W1710592522
FRCN01000007
Bacteroidota
Chitinophaga sp. CF418 [FRCN]
29555
29479
-
Pro
GGG
[ENA]
¡û
>W1710594116
FSRA01000001
Bacteroidota
Chitinophaga niabensis [FSRA]
2319654
2319578
-
Pro
GGG
[ENA]
¡û
>W1710601096
FUWZ01000003
Bacteroidota
Chitinophaga eiseniae [FUWZ]
308788
308862
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK