This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179994 (54 seq.)
>W1710873228
LMMQ01000009
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
370316
370392
+
Trp
CCA
[ENA]
¡û
>W1711009531
LQQT01000018
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
187
263
+
Trp
CCA
[ENA]
¡û
>W1711391671
MELY01000007
Alphaproteobacteria
Alphaproteobacteria bacterium GWA2_41_27 [MELY]
8714
8638
-
Trp
CCA
[ENA]
¡û
>W1711505920
MKVY01000038
Alphaproteobacteria
Rhizobiales bacterium 65-9 [MKVY]
315928
316004
+
Trp
CCA
[ENA]
¡û
>W131163795
ARAA01000070
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
422828
422904
+
Trp
CCA
[ENA]
¡û
>C171072684
CP018095
Alphaproteobacteria
Chelatococcus daeguensis TAD1 [CP018095]
2447668
2447592
-
Trp
CCA
-
¡û
>w026501
ABAY01000348
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
567
489
-
Trp
CCA
[ENA]
¡û
>w015382
AAPC01000001
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [AAPC]
381878
381956
+
Trp
CCA
[ENA]
¡û
>WENV181167304
OEIU01018929
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
49
125
+
Trp
CCA
[ENA]
¢þ
>WENV181167622
OEIU01050255
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
430
506
+
Trp
CCA
[ENA]
¢þ
>WENV181172680
OEIV010913619
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
103
179
+
Trp
CCA
[ENA]
¢þ
>WENV181295759
OFHJ01000475
[OFHJ] soil metagenome; Clay
15094
15018
-
Trp
CCA
[ENA]
¢þ
>WENV181307944
OFIS01000052
[OFIS] sludge metagenome; sludge
152758
152682
-
Trp
CCA
[ENA]
¢þ
>WENV181311643
OFJB01006608
[OFJB] sludge metagenome; sludge
3297
3221
-
Trp
CCA
[ENA]
¢þ
>WENV181402124
OFTY01000139
[OFTY] sludge metagenome; sludge
1714
1790
+
Trp
CCA
[ENA]
¢þ
>W141151398
AXBA01000040
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
42180
42104
-
Trp
CCA
[ENA]
¡û
>C08011445
CP000781
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [CP000781]
3739072
3739148
+
Trp
CCA
[Ensembl]
¡û
>C08000297
AP009384
Alphaproteobacteria
Azorhizobium caulinodans ORS 571 [AP009384]
983455
983531
+
Trp
CCA
[Ensembl]
¡û
>C08006474
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
445130
445057
-
Trp
CCA
[Ensembl]
¡û
>W141278501
JAFO01000001
Alphaproteobacteria
Xanthobacter sp. 126 [JAFO]
3617869
3617793
-
Trp
CCA
[ENA]
¡û
>WENV170649133
JRHI01007004
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
279
203
-
Trp
CCA
[ENA]
¢þ
>WENV170701428
LKGT01008841
[LKGT] marine sediment metagenome; sediment sample collected at the water-sediment interface from the South Pacific gyre, IODP
1971
2047
+
Trp
CCA
[ENA]
¢þ
>WENV170701456
LKGT01009193
[LKGT] marine sediment metagenome; sediment sample collected at the water-sediment interface from the South Pacific gyre, IODP
2980
3056
+
Trp
CCA
[ENA]
¢þ
>WENV170710292
LNFM01001471
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
60386
60310
-
Trp
CCA
[ENA]
¢þ
>WENV170714284
LNFM01065242
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
384
308
-
Trp
CCA
[ENA]
¢þ
>WENV170714946
LNFM01118271
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
388
312
-
Trp
CCA
[ENA]
¢þ
>W09107195
ABFR01000009
Alphaproteobacteria
Methylorubrum populi BJ001 [ABFR]
225403
225479
+
Trp
CCA
[ENA]
¡û
>C181180226
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
4121730
4121654
-
Trp
CCA
-
¡û
>W141730061
JNIB01000001
Alphaproteobacteria
Xanthobacter sp. 91 [JNIB]
3717662
3717738
+
Trp
CCA
[ENA]
¡û
>W141733731
JNLC01000006
Alphaproteobacteria
Bosea sp. 117 [JNLC]
196
272
+
Trp
CCA
[ENA]
¡û
>W1910698132
MEMH01000012
Alphaproteobacteria
Alphaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_42_30 [MEMH]
8707
8631
-
Trp
CCA
[ENA]
¡û
>C09107822
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
1994565
1994641
+
Trp
CCA
[Ensembl]
¡û
>W1911148350
NPEU01000015
Alphaproteobacteria
Rhodoplanes elegans DSM 11907 [NPEU]
6128
6204
+
Trp
CCA
[ENA]
¡û
>W1911148467
NPEW01000113
Alphaproteobacteria
Rhodoplanes serenus DSM 19946 [NPEW]
8023
7947
-
Trp
CCA
[ENA]
¡û
>W1911148523
NPEX01000234
Alphaproteobacteria
Rhodoplanes roseus DSM 5909 [NPEX]
4827
4751
-
Trp
CCA
[ENA]
¡û
>W1911653540
QDFX01000028
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
374
450
+
Trp
CCA
[ENA]
¡û
>C151094775
CP012398
Alphaproteobacteria
Chelatococcus sp. CO-6 [CP012398]
114708
114632
-
Trp
CCA
-
¡û
>W10110086
ADBQ01000013
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
20388
20312
-
Trp
CCA
[ENA]
¡û
>C10112188
CP002026
Alphaproteobacteria
Ancylobacter novellus DSM 506 [CP002026]
1495064
1495140
+
Trp
CCA
[Ensembl]
¡û
>W11112523
ADBQ01000013
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
20388
20312
-
Trp
CCA
[ENA]
¡û
>W1510741148
CYHC01000020
Alphaproteobacteria
Chelatococcus sambhunathii DSM 18167 [CYHC]
17589
17513
-
Trp
CCA
[ENA]
¡û
>W1511400910
JTHF01000232
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
42539
42463
-
Trp
CCA
[ENA]
¡û
>W1511400959
JTHG01000149
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
4761
4685
-
Trp
CCA
[ENA]
¡û
>C161001158
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
4405415
4405491
+
Trp
CCA
[Ensembl]
¡û
>W121103225
AKZI01000095
Alphaproteobacteria
Rhodovulum sp. PH10 [AKZI]
4856
4780
-
Trp
CCA
[ENA]
¡û
>W121110770
ALIQ01000001
Alphaproteobacteria
Chelatococcus sp. GW1 [ALIQ]
19563
19487
-
Trp
CCA
[ENA]
¡û
>W1610590406
LDRL01000006
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
2369
2445
+
Trp
CCA
[ENA]
¡û
>W1610631782
LIOL01000020
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
17589
17513
-
Trp
CCA
[ENA]
¡û
>W1610735574
LMMQ01000009
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
370316
370392
+
Trp
CCA
[ENA]
¡û
>W1610858051
LQQT01000018
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
187
263
+
Trp
CCA
[ENA]
¡û
>W1710560681
FONO01000013
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
1319
1395
+
Trp
CCA
[ENA]
¡û
>W1710579088
FPCB01000067
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
18537
18461
-
Trp
CCA
[ENA]
¡û
>W1710709686
LDRL01000006
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
2369
2445
+
Trp
CCA
[ENA]
¡û
>W1710764667
LIOL01000020
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
17589
17513
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK