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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179998 (91 seq.)
>W1710854616
LLXP01000006
Gammaproteobacteria
Pseudomonas chengduensis alcaliphila [LLXP]
87083
87167
+
Leu
TAG
[ENA]
¡û
>W1710872527
LMMB01000004
Gammaproteobacteria
Pseudomonas sp. Leaf83 [LMMB]
83932
84016
+
Leu
TAG
[ENA]
¡û
>W1710915915
LNUP01000018
Gammaproteobacteria
Pseudomonas sp. EpS/L25 [LNUP]
226775
226859
+
Leu
TAG
[ENA]
¡û
>W1711173183
LWCR01000005
Gammaproteobacteria
Pseudomonas oryzihabitans [LWCR]
6356
6272
-
Leu
TAG
[ENA]
¡û
>W1711723466
MTLN01000012
Gammaproteobacteria
Pseudomonas psychrotolerans [MTLN]
234958
235042
+
Leu
TAG
[ENA]
¡û
>W1712106004
NIUB01000056
Gammaproteobacteria
Pseudomonas oleovorans subsp. oleovorans [NIUB]
9286
9202
-
Leu
TAG
[ENA]
¡û
>C171046207
CP016162
Gammaproteobacteria
Pseudomonas alcaliphila JAB1 [CP016162]
2928843
2928759
-
Leu
TAG
-
¡û
>C171060183
CP017290
Gammaproteobacteria
Pseudomonas sp. LPH1 [CP017290]
2204552
2204636
+
Leu
TAG
-
¡û
>C171083109
CP018758
Gammaproteobacteria
Pseudomonas psychrotolerans PRS08-11306 [CP018758]
34587
34671
+
Leu
TAG
-
¡û
>W131055660
ANBZ01000096
Gammaproteobacteria
Pseudomonas sp. 313 [ANBZ]
67438
67522
+
Leu
TAG
[ENA]
¡û
>W131059003
ANGB01000006
Gammaproteobacteria
Pseudomonas chengduensis 34 [ANGB]
98404
98488
+
Leu
TAG
[ENA]
¡û
>W131155977
AQPA01000061
Gammaproteobacteria
Pseudomonas thermotolerans DSM 14292 [AQPA]
12009
11925
-
Leu
TAG
[ENA]
¡û
>WENV012837
AACY020350419
Marine microbial communities from Global Ocean Sampling (GOS)
1373
1457
+
Leu
TAG
[ENA]
>W141076165
ATCP01000164
Gammaproteobacteria
Pseudomonas alcaligenes OT 69 [ATCP]
32801
32885
+
Leu
TAG
[ENA]
¡û
>W141106890
AVQF01000012
Gammaproteobacteria
Pseudomonas chengduensis EGD-AQ5 [AVQF]
105462
105546
+
Leu
TAG
[ENA]
¡û
>WENV181415252
OGCL01006703
[OGCL] hot springs metagenome; Hot spring water
127
211
+
Leu
TAG
[ENA]
¢þ
>W141207663
AZNY01000009
Gammaproteobacteria
Pseudomonas sp. MOIL14HWK12:I1 [AZNY]
212006
211922
-
Leu
TAG
[ENA]
¡û
>W141207758
AZOA01000008
Gammaproteobacteria
Pseudomonas sp. MOIL14HWK12:I2 [AZOA]
189477
189561
+
Leu
TAG
[ENA]
¡û
>W141207823
AZOB01000012
Gammaproteobacteria
Pseudomonas oleovorans MOIL14HWK12 [AZOB]
124748
124832
+
Leu
TAG
[ENA]
¡û
>W141216318
AZUT01000016
Gammaproteobacteria
Pseudomonas thermotolerans J53 [AZUT]
18083
17999
-
Leu
TAG
[ENA]
¡û
>W141231082
BATO01000020
Gammaproteobacteria
Pseudomonas alcaligenes MRY13-0052 [BATO]
72052
71968
-
Leu
TAG
[ENA]
¡û
>W141236966
BBIT01000019
Gammaproteobacteria
Pseudomonas oryzihabitans NBRC 102199 [BBIT]
133608
133524
-
Leu
TAG
[ENA]
¡û
>W141242317
CAIG01000009
Gammaproteobacteria
Pseudomonas oleovorans CECT 5344 [CAIG]
56940
57024
+
Leu
TAG
[ENA]
¡û
>WENV182571353
OJFG01020834
[OJFG] seawater metagenome; Sea water
522
438
-
Leu
TAG
[ENA]
¢þ
>WENV182582984
OJHC01006423
[OJHC] seawater metagenome; Sea water
452
368
-
Leu
TAG
[ENA]
¢þ
>WENV183743107
PJUJ01000038
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
107356
107272
-
Leu
TAG
[ENA]
¢þ
>WENV183743923
PJUK01000044
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
107356
107272
-
Leu
TAG
[ENA]
¢þ
>WENV183744662
PJUL01000052
[PJUL] feces metagenome; Chicken feces enriched on filter paper
107356
107272
-
Leu
TAG
[ENA]
¢þ
>W141463623
JFJN01000029
Gammaproteobacteria
Pseudomonas composti AD6 [JFJN]
17220
17304
+
Leu
TAG
[ENA]
¡û
>C181158235
CP027657
Gammaproteobacteria
Pseudomonas mendocina NEB698 [CP027657]
5281865
5281781
-
Leu
TAG
-
¡û
>C181202670
CP031606
Gammaproteobacteria
Pseudomonas sp. phDV1 [CP031606]
1908257
1908341
+
Leu
TAG
-
¡û
>W141809653
JPRQ01000017
Gammaproteobacteria
Pseudomonas sp. 1-7 [JPRQ]
13254
13170
-
Leu
TAG
[ENA]
¡û
>W1910928646
NIQU01000003
Gammaproteobacteria
Pseudomonas sediminis PI11 [NIQU]
471763
471679
-
Leu
TAG
[ENA]
¡û
>W1910928720
NIQV01000020
Gammaproteobacteria
Pseudomonas toyotomiensis DSM 26169 [NIQV]
48604
48688
+
Leu
TAG
[ENA]
¡û
>W1911693819
QLYU01000028
Gammaproteobacteria
Pseudomonas sp. MDMC224 [QLYU]
17117
17201
+
Leu
TAG
[ENA]
¡û
>W1911693847
QLYV01000102
Gammaproteobacteria
Pseudomonas sp. MDMC216 [QLYV]
19384
19468
+
Leu
TAG
[ENA]
¡û
>W1911693911
QLYW01000083
Gammaproteobacteria
Pseudomonas sp. MDMC17 [QLYW]
107932
108016
+
Leu
TAG
[ENA]
¡û
>W1911765642
QXDA01000001
Gammaproteobacteria
Pseudomonas oleovorans E1205 [QXDA]
263230
263314
+
Leu
TAG
[ENA]
¡û
>W1810100488
PGLR01000054
Gammaproteobacteria
Pseudomonas sp. ZH-FAD [PGLR]
9850
9766
-
Leu
TAG
[ENA]
¡û
>W1810171797
PJLX01000001
Gammaproteobacteria
Pseudomonas sp. YY-1 [PJLX]
526824
526740
-
Leu
TAG
[ENA]
¡û
>W1810484179
QASO01000021
Gammaproteobacteria
Pseudomonas indoloxydans JCM 14246 [QASO]
11662
11578
-
Leu
TAG
[ENA]
¡û
>W1810501407
QBIZ02000006
Gammaproteobacteria
Pseudomonas sp. RIT 411 [QBIZ]
229570
229654
+
Leu
TAG
[ENA]
¡û
>W1810787108
QRDL01000007
Gammaproteobacteria
Pseudomonas oleovorans AG1002 [QRDL]
67201
67285
+
Leu
TAG
[ENA]
¡û
>C151101393
HG916826
Gammaproteobacteria
Pseudomonas oleovorans CECT 5344 CECT5344 [HG916826]
1838917
1839001
+
Leu
TAG
[Ensembl]
¡û
>C151102254
LK391695
Gammaproteobacteria
Pseudomonas oleovorans [LK391695]
1848343
1848427
+
Leu
TAG
[Ensembl]
¡û
>W1510015170
BBQO01000013
Gammaproteobacteria
Pseudomonas toyotomiensis KF710 [BBQO]
158618
158534
-
Leu
TAG
[ENA]
¡û
>W1511399758
JTFL01000127
Gammaproteobacteria
Pseudomonas oleovorans S1 [JTFL]
141487
141571
+
Leu
TAG
[ENA]
¡û
>W1511530647
JYKV01000004
Gammaproteobacteria
Pseudomonas oryzihabitans RIT370 [JYKV]
22857
22773
-
Leu
TAG
[ENA]
¡û
>C161063387
CP013987
Gammaproteobacteria
Pseudomonas oryzihabitans USDA-ARS-USMARC-56511 [CP013987]
1950874
1950958
+
Leu
TAG
[Ensembl]
¡û
>W121023841
AHBD01000012
Gammaproteobacteria
Pseudomonas psychrotolerans L19 [AHBD]
67954
68038
+
Leu
TAG
[ENA]
¡û
>W1610592126
LDSO01000032
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSO]
1376
1460
+
Leu
TAG
[ENA]
¡û
>W1610592164
LDSP01000015
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSP]
1636
1720
+
Leu
TAG
[ENA]
¡û
>W1610592226
LDSQ01000016
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSQ]
74683
74599
-
Leu
TAG
[ENA]
¡û
>W1610592267
LDSR01000011
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSR]
45908
45992
+
Leu
TAG
[ENA]
¡û
>W1610592358
LDSS01000047
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSS]
29473
29557
+
Leu
TAG
[ENA]
¡û
>W1610592420
LDST01000054
Gammaproteobacteria
Pseudomonas psychrotolerans [LDST]
54886
54802
-
Leu
TAG
[ENA]
¡û
>W1610592470
LDSU01000039
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSU]
1849
1933
+
Leu
TAG
[ENA]
¡û
>W1610592520
LDSV01000022
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSV]
1621
1705
+
Leu
TAG
[ENA]
¡û
>W1610592584
LDSW01000025
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSW]
1672
1756
+
Leu
TAG
[ENA]
¡û
>W1610592640
LDSX01000033
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSX]
32787
32871
+
Leu
TAG
[ENA]
¡û
>W1610592666
LDSY01000002
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSY]
178220
178136
-
Leu
TAG
[ENA]
¡û
>W1610592723
LDSZ01000002
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSZ]
202317
202233
-
Leu
TAG
[ENA]
¡û
>W1610716893
LLXP01000006
Gammaproteobacteria
Pseudomonas chengduensis alcaliphila [LLXP]
87083
87167
+
Leu
TAG
[ENA]
¡û
>W1610734873
LMMB01000004
Gammaproteobacteria
Pseudomonas sp. Leaf83 [LMMB]
83932
84016
+
Leu
TAG
[ENA]
¡û
>W1610774154
LNUP01000018
Gammaproteobacteria
Pseudomonas sp. EpS/L25 [LNUP]
226775
226859
+
Leu
TAG
[ENA]
¡û
>W1610981788
LWCR01000005
Gammaproteobacteria
Pseudomonas oryzihabitans [LWCR]
6356
6272
-
Leu
TAG
[ENA]
¡û
>W1710075539
BCZV01000002
Gammaproteobacteria
Pseudomonas alcaliphila NBRC 102411 [BCZV]
587121
587037
-
Leu
TAG
[ENA]
¡û
>W1710076321
BDAJ01000006
Gammaproteobacteria
Pseudomonas oleovorans NBRC 14167 [BDAJ]
11435
11519
+
Leu
TAG
[ENA]
¡û
>W1710076459
BDAL01000037
Gammaproteobacteria
Pseudomonas oleovorans subsp. oleovorans NBRC 13583 [BDAL]
44902
44818
-
Leu
TAG
[ENA]
¡û
>W1710508409
FMWB01000010
Gammaproteobacteria
Pseudomonas psychrotolerans [FMWB]
121884
121800
-
Leu
TAG
[ENA]
¡û
>W1710509512
FMXG01000004
Gammaproteobacteria
Pseudomonas sp. NFPP33 [FMXG]
101612
101696
+
Leu
TAG
[ENA]
¡û
>W1710512726
FMZQ01000008
Gammaproteobacteria
Pseudomonas chengduensis [FMZQ]
155240
155156
-
Leu
TAG
[ENA]
¡û
>W1710513475
FNAE01000003
Gammaproteobacteria
Pseudomonas alcaliphila [FNAE]
88483
88567
+
Leu
TAG
[ENA]
¡û
>W1710529192
FNNU01000005
Gammaproteobacteria
Pseudomonas kuykendallii [FNNU]
115278
115362
+
Leu
TAG
[ENA]
¡û
>W1710542382
FNZC01000037
Gammaproteobacteria
Pseudomonas oleovorans [FNZC]
43575
43659
+
Leu
TAG
[ENA]
¡û
>W1710548914
FOED01000001
Gammaproteobacteria
Pseudomonas sp. Snoq117.2 [FOED]
237919
237835
-
Leu
TAG
[ENA]
¡û
>W1710572314
FOWP01000003
Gammaproteobacteria
Pseudomonas composti [FOWP]
70655
70739
+
Leu
TAG
[ENA]
¡û
>W1710573360
FOXK01000016
Gammaproteobacteria
Pseudomonas toyotomiensis [FOXK]
57930
58014
+
Leu
TAG
[ENA]
¡û
>W1710580216
FPJD01000002
Gammaproteobacteria
Pseudomonas sp. NFACC19-2 [FPJD]
60691
60775
+
Leu
TAG
[ENA]
¡û
>W1710711406
LDSO01000032
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSO]
1376
1460
+
Leu
TAG
[ENA]
¡û
>W1710711444
LDSP01000015
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSP]
1636
1720
+
Leu
TAG
[ENA]
¡û
>W1710711506
LDSQ01000016
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSQ]
74683
74599
-
Leu
TAG
[ENA]
¡û
>W1710711547
LDSR01000011
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSR]
45908
45992
+
Leu
TAG
[ENA]
¡û
>W1710711638
LDSS01000047
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSS]
29473
29557
+
Leu
TAG
[ENA]
¡û
>W1710711700
LDST01000054
Gammaproteobacteria
Pseudomonas psychrotolerans [LDST]
54886
54802
-
Leu
TAG
[ENA]
¡û
>W1710711750
LDSU01000039
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSU]
1849
1933
+
Leu
TAG
[ENA]
¡û
>W1710711800
LDSV01000022
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSV]
1621
1705
+
Leu
TAG
[ENA]
¡û
>W1710711864
LDSW01000025
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSW]
1672
1756
+
Leu
TAG
[ENA]
¡û
>W1710711920
LDSX01000033
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSX]
32787
32871
+
Leu
TAG
[ENA]
¡û
>W1710711946
LDSY01000002
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSY]
178220
178136
-
Leu
TAG
[ENA]
¡û
>W1710712003
LDSZ01000002
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSZ]
202317
202233
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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