This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180005 (14 seq.)
>W1711959037
NBYK01000002
Gammaproteobacteria
Halopseudomonas aestusnigri [NBYK]
75264
75348
+
Leu
TAG
[ENA]
¡û
>WENV170116818
CENH01025764
[CENH] marine metagenome genome assembly TARA_030_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3145
3061
-
Leu
TAG
[ENA]
¢þ
>WENV170136668
CENV01058866
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
979
1063
+
Leu
TAG
[ENA]
¢þ
>WENV170182315
CEOX01150980
[CEOX] marine metagenome genome assembly TARA_065_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
167
83
-
Leu
TAG
[ENA]
¢þ
>WENV170314600
CESO01013111
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
99
183
+
Leu
TAG
[ENA]
¢þ
>C151093954
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
723383
723299
-
Leu
TAG
-
¡û
>C151094006
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
649866
649782
-
Leu
TAG
-
¡û
>C151094044
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
1904206
1904122
-
Leu
TAG
-
¡û
>C151094108
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
282315
282231
-
Leu
TAG
-
¡û
>C151094119
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
387627
387711
+
Leu
TAG
-
¡û
>C151094212
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
334795
334711
-
Leu
TAG
-
¡û
>C151094266
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
283315
283231
-
Leu
TAG
-
¡û
>C161041400
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
287165
287081
-
Leu
TAG
[Ensembl]
¡û
>W1710539232
FNVE01000002
Gammaproteobacteria
Halopseudomonas aestusnigri [FNVE]
75358
75442
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK