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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180025 (50 seq.)
>W1710803041
LJYG01000108
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
100506
100430
-
Arg
TCT
[ENA]
¡û
>W131167464
ARDH01000005
Alphaproteobacteria
Bradyrhizobium sp. WSM4349 WSM4349 [ARDH]
24300
24224
-
Arg
TCT
[ENA]
¡û
>W1711504252
MKUJ01000010
Alphaproteobacteria
Afipia sp. 64-13 [MKUJ]
108852
108776
-
Arg
TCT
[ENA]
¡û
>W1711928288
NAEX01000170
Alphaproteobacteria
Bradyrhizobium canariense [NAEX]
113817
113893
+
Arg
TCT
[ENA]
¡û
>W1711928341
NAEY01000159
Alphaproteobacteria
Bradyrhizobium canariense [NAEY]
118583
118659
+
Arg
TCT
[ENA]
¡û
>W1711928387
NAEZ01000167
Alphaproteobacteria
Bradyrhizobium canariense [NAEZ]
27966
27890
-
Arg
TCT
[ENA]
¡û
>W1711928421
NAFA01000186
Alphaproteobacteria
Bradyrhizobium canariense [NAFA]
118583
118659
+
Arg
TCT
[ENA]
¡û
>W1711928482
NAFB01000182
Alphaproteobacteria
Bradyrhizobium canariense [NAFB]
118583
118659
+
Arg
TCT
[ENA]
¡û
>W1711928517
NAFC01000158
Alphaproteobacteria
Bradyrhizobium canariense [NAFC]
33245
33169
-
Arg
TCT
[ENA]
¡û
>W1711928553
NAFD01000156
Alphaproteobacteria
Bradyrhizobium canariense [NAFD]
20987
21063
+
Arg
TCT
[ENA]
¡û
>W1711928601
NAFE01000188
Alphaproteobacteria
Bradyrhizobium canariense [NAFE]
20987
21063
+
Arg
TCT
[ENA]
¡û
>W1711928648
NAFF01000067
Alphaproteobacteria
Bradyrhizobium canariense [NAFF]
20987
21063
+
Arg
TCT
[ENA]
¡û
>W1711928699
NAFG01000148
Alphaproteobacteria
Bradyrhizobium canariense [NAFG]
20987
21063
+
Arg
TCT
[ENA]
¡û
>W1711928747
NAFH01000144
Alphaproteobacteria
Bradyrhizobium canariense [NAFH]
20987
21063
+
Arg
TCT
[ENA]
¡û
>W1711928794
NAFI01000147
Alphaproteobacteria
Bradyrhizobium canariense [NAFI]
20987
21063
+
Arg
TCT
[ENA]
¡û
>W1711928871
NAFJ01000152
Alphaproteobacteria
Bradyrhizobium canariense [NAFJ]
168099
168023
-
Arg
TCT
[ENA]
¡û
>W1711928916
NAFK01000173
Alphaproteobacteria
Bradyrhizobium canariense [NAFK]
139568
139644
+
Arg
TCT
[ENA]
¡û
>WENV180105319
OAPD01030236
[OAPD] marine metagenome; 2010
329
253
-
Arg
TCT
[ENA]
¢þ
>WENV181167167
OEIU01011988
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2659
2735
+
Arg
TCT
[ENA]
¢þ
>W141220419
AZXU01000002
Alphaproteobacteria
Bradyrhizobium sp. WSM1417 [AZXU]
3717906
3717830
-
Arg
TCT
[ENA]
¡û
>W141275926
JADK01000002
Alphaproteobacteria
Bradyrhizobium sp. URHA0013 [JADK]
1610877
1610801
-
Arg
TCT
[ENA]
¡û
>WENV170566144
FKKE01007718
[FKKE] freshwater metagenome; freshwater
648
724
+
Arg
TCT
[ENA]
¢þ
>WENV170707006
LNAP01010782
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
6954
7030
+
Arg
TCT
[ENA]
¢þ
>WENV170707533
LNAP01024162
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3339
3263
-
Arg
TCT
[ENA]
¢þ
>WENV170708070
LNAP01047791
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1688
1612
-
Arg
TCT
[ENA]
¢þ
>WENV170708204
LNAP01058463
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
20
96
+
Arg
TCT
[ENA]
¢þ
>C181178217
CP029426
Alphaproteobacteria
Bradyrhizobium amphicarpaeae 39S1MB [CP029426]
3195718
3195642
-
Arg
TCT
-
¡û
>C181178263
CP029427
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 85S1MB [CP029427]
3003700
3003624
-
Arg
TCT
-
¡û
>C191071694
CP030051
Alphaproteobacteria
Bradyrhizobium guangdongense CCBAU 51649 [CP030051]
3925234
3925158
-
Arg
TCT
-
¡û
>C191071722
CP030053
Alphaproteobacteria
Bradyrhizobium guangzhouense CCBAU 51670 [CP030053]
3882428
3882504
+
Arg
TCT
-
¡û
>C191186667
CP041090
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 65S1MB [CP041090]
2274474
2274398
-
Arg
TCT
-
¡û
>W1910611549
LFJC01000003
Alphaproteobacteria
Bradyrhizobium nitroreducens TSA1 [LFJC]
3689416
3689492
+
Arg
TCT
[ENA]
¡û
>W1910840289
MZXW01000054
Alphaproteobacteria
Bradyrhizobium betae Opo-243 [MZXW]
254405
254481
+
Arg
TCT
[ENA]
¡û
>W1911410015
NWTI01000017
Alphaproteobacteria
Bradyrhizobium sp. Y36 [NWTI]
79173
79249
+
Arg
TCT
[ENA]
¡û
>W1810400157
PYFW01000004
Alphaproteobacteria
Bradyrhizobium sp. MOS003 [PYFW]
378795
378871
+
Arg
TCT
[ENA]
¡û
>W1810400197
PYFX01000004
Alphaproteobacteria
Bradyrhizobium sp. MOS002 [PYFX]
743393
743317
-
Arg
TCT
[ENA]
¡û
>W1511533256
JYMR01000008
Alphaproteobacteria
Bradyrhizobium sp. LTSP849 [JYMR]
220999
221075
+
Arg
TCT
[ENA]
¡û
>W1511533329
JYMS01000046
Alphaproteobacteria
Bradyrhizobium sp. LTSP857 [JYMS]
41373
41297
-
Arg
TCT
[ENA]
¡û
>W1511533414
JYMU01000023
Alphaproteobacteria
Bradyrhizobium sp. LTSPM299 [JYMU]
121494
121418
-
Arg
TCT
[ENA]
¡û
>C121000723
AP012279
Alphaproteobacteria
Bradyrhizobium cosmicum S23321 [AP012279]
3865315
3865391
+
Arg
TCT
[Ensembl]
¡û
>C161107847
LN901633
Alphaproteobacteria
Bradyrhizobium sp. [LN901633]
7240377
7240453
+
Arg
TCT
-
¡û
>C161107858
LN901633
Alphaproteobacteria
Bradyrhizobium sp. [LN901633]
3805479
3805403
-
Arg
TCT
-
¡û
>W121036215
AHLW01000001
Alphaproteobacteria
Bradyrhizobium sp. WSM471 [AHLW]
4307556
4307480
-
Arg
TCT
[ENA]
¡û
>W121036418
AHMB01000021
Alphaproteobacteria
Bradyrhizobium sp. WSM1253 [AHMB]
21474
21550
+
Arg
TCT
[ENA]
¡û
>W1610549174
JXDL01000001
Alphaproteobacteria
Bradyrhizobium sp. AT1 [JXDL]
642404
642328
-
Arg
TCT
[ENA]
¡û
>W1610666898
LJYG01000108
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
100506
100430
-
Arg
TCT
[ENA]
¡û
>W1710546026
FOBX01000012
Alphaproteobacteria
Bradyrhizobium sp. OK095 [FOBX]
193219
193295
+
Arg
TCT
[ENA]
¡û
>W1710564438
FOQM01000021
Alphaproteobacteria
Bradyrhizobium sp. Gha [FOQM]
48025
47949
-
Arg
TCT
[ENA]
¡û
>W1710571314
FOVU01000011
Alphaproteobacteria
Bradyrhizobium sp. Ghvi [FOVU]
66608
66684
+
Arg
TCT
[ENA]
¡û
>W1710652748
JXDL01000001
Alphaproteobacteria
Bradyrhizobium sp. AT1 [JXDL]
642404
642328
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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