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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180043 (72 seq.)
>W1711174353
LWED01000060
Gammaproteobacteria
Shewanella baltica [LWED]
25394
25318
-
Met
CAT
[ENA]
¡û
>W1711621601
MPDG02000001
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
121510
121434
-
Met
CAT
[ENA]
¡û
>W1711934389
NAJR01000002
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
104467
104391
-
Met
CAT
[ENA]
¡û
>W1712080436
NGZL01000011
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
45934
45858
-
Met
CAT
[ENA]
¡û
>C019861
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
1006649
1006573
-
Met
CAT
[Ensembl]
¡û
>C020711
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
1320746
1320670
-
Met
CAT
[Ensembl]
¡û
>C022261
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
3701709
3701785
+
Met
CAT
[Ensembl]
¡û
>C022363
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
3471665
3471741
+
Met
CAT
[Ensembl]
¡û
>C022455
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
3542454
3542530
+
Met
CAT
[Ensembl]
¡û
>C022560
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
3490170
3490246
+
Met
CAT
[Ensembl]
¡û
>C023005
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
1335311
1335235
-
Met
CAT
[Ensembl]
¡û
>C023324
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
1242653
1242577
-
Met
CAT
[Ensembl]
¡û
>w026336
ABAU01000082
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
4760
4836
+
Met
CAT
[ENA]
¡û
>w024897
AAZC01000035
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
44104
44180
+
Met
CAT
[ENA]
¡û
>w022865
AAWY01000014
Gammaproteobacteria
Shewanella putrefaciens 200 [AAWY]
99395
99322
-
Met
CAT
[ENA]
¡û
>w018651
AATK01000061
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
2945
3021
+
Met
CAT
[ENA]
¡û
>WENV180311159
OBJT01139069
[OBJT] soil metagenome; soil
151
75
-
Ile2
CAT
[ENA]
¢þ
>W141171208
AXZL01000061
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
38178
38102
-
Met
CAT
[ENA]
¡û
>C08008700
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
1424958
1424885
-
Met
CAT
[Ensembl]
¡û
>W141227881
BALN01000001
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 [BALN]
64929
64853
-
Met
CAT
[ENA]
¡û
>C08008804
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
1455944
1455871
-
Met
CAT
[Ensembl]
¡û
>W141276555
JADX01000004
Gammaproteobacteria
Shewanella fidelis ATCC BAA-318 [JADX]
508328
508252
-
Met
CAT
[ENA]
¡û
>W141277716
JAEU01000009
Gammaproteobacteria
Shewanella putrefaciens HRCR-6 [JAEU]
247308
247384
+
Met
CAT
[ENA]
¡û
>WENV020690
AACY020557343
Marine microbial communities from Global Ocean Sampling (GOS)
4425
4501
+
Met
CAT
[ENA]
>WENV020960
AACY020561217
Marine microbial communities from Global Ocean Sampling (GOS)
4835
4911
+
Met
CAT
[ENA]
>C181016892
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
1999814
1999738
-
Met
CAT
-
¡û
>C181057543
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
2107843
2107919
+
Met
CAT
-
¡û
>C181063030
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
1228407
1228331
-
Met
CAT
-
¡û
>C181074987
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
451205
451281
+
Met
CAT
-
¡û
>C181164553
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
3216947
3216871
-
Met
CAT
-
¡û
>C181165390
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
1439477
1439553
+
Met
CAT
-
¡û
>C181167970
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
1327291
1327215
-
Met
CAT
-
¡û
>W141520043
JGVI01000032
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
35671
35595
-
Met
CAT
[ENA]
¡û
>C191187150
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
1266037
1265961
-
Met
CAT
-
¡û
>C191205195
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
832407
832483
+
Met
CAT
-
¡û
>C191206512
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
1314036
1313960
-
Met
CAT
-
¡û
>W141802027
JPEO01000027
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
15494
15418
-
Met
CAT
[ENA]
¡û
>W09102781
AAIN01000007
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
45525
45601
+
Met
CAT
[ENA]
¡û
>W09103971
AALB01000086
Gammaproteobacteria
Shewanella putrefaciens CN-32 [AALB]
3682
3758
+
Met
CAT
[ENA]
¡û
>W09104045
AALH01000021
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
9627
9703
+
Met
CAT
[ENA]
¡û
>W09104274
AALN01000008
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
58527
58451
-
Met
CAT
[ENA]
¡û
>W09104606
AALX01000039
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
27376
27300
-
Met
CAT
[ENA]
¡û
>W1910913732
NHRI01000001
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
481785
481861
+
Met
CAT
[ENA]
¡û
>C09109186
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
3750618
3750694
+
Met
CAT
[Ensembl]
¡û
>W1810005528
BFBQ01000001
Gammaproteobacteria
Shewanella halifaxensis 6JANF4-E-4 [BFBQ]
554891
554967
+
Met
CAT
[ENA]
¡û
>W1810073412
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
2651937
2651861
-
Met
CAT
[ENA]
¡û
>W1810423033
PYSG01000002
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
486144
486068
-
Met
CAT
[ENA]
¡û
>W1810587774
QFLG01000052
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
5930
5854
-
Met
CAT
[ENA]
¡û
>W1810721606
QNSC01000019
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
345
421
+
Met
CAT
[ENA]
¡û
>W1810789682
QRHC01000011
Gammaproteobacteria
Vibrio maerlii G62 [QRHC]
69119
69195
+
Met
CAT
[ENA]
¡û
>W10119056
ADVH01000008
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
36554
36478
-
Met
CAT
[ENA]
¡û
>W10126039
AECY01000002
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
48776
48700
-
Met
CAT
[ENA]
¡û
>W10126398
AEDE01000003
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
130912
130836
-
Met
CAT
[ENA]
¡û
>C11119419
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
3717485
3717561
+
Met
CAT
[Ensembl]
¡û
>C11119555
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
1422984
1422908
-
Met
CAT
[Ensembl]
¡û
>C11119656
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
1456541
1456465
-
Met
CAT
[Ensembl]
¡û
>W1511403542
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
2924310
2924386
+
Met
CAT
[ENA]
¡û
>C11121590
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
1241573
1241497
-
Met
CAT
[Ensembl]
¡û
>W11125228
ADVH01000008
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
36554
36478
-
Met
CAT
[ENA]
¡û
>W11133300
AECY01000002
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
48776
48700
-
Met
CAT
[ENA]
¡û
>W11133659
AEDE01000003
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
130912
130836
-
Met
CAT
[ENA]
¡û
>W11169928
AFOZ01000037
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
92244
92320
+
Met
CAT
[ENA]
¡û
>W11178434
AGEX01000003
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
126395
126319
-
Met
CAT
[ENA]
¡û
>W121103341
AKZL01000117
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
6017
6093
+
Met
CAT
[ENA]
¡û
>W1610072045
BCUO01000001
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
96235
96159
-
Met
CAT
[ENA]
¡û
>W1610617822
LGYY01000018
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
64672
64748
+
Met
CAT
[ENA]
¡û
>W1610982666
LWED01000060
Gammaproteobacteria
Shewanella baltica [LWED]
25394
25318
-
Met
CAT
[ENA]
¡û
>W1710069247
BCUO01000001
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
96235
96159
-
Met
CAT
[ENA]
¡û
>W1710597921
FTNN01000002
Gammaproteobacteria
Shewanella morhuae [FTNN]
346718
346794
+
Met
CAT
[ENA]
¡û
>W1710692518
JZWJ01000183
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
39852
39776
-
Met
CAT
[ENA]
¡û
>W1710706675
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
3049215
3049139
-
Met
CAT
[ENA]
¡û
>W1710743997
LGYY01000018
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
64672
64748
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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