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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180052 (109 seq.)
>W1710806062
LKAP01000036
Gammaproteobacteria
Alcanivorax borkumensis [LKAP]
3019
3095
+
Arg
CCT
[ENA]
¡û
>W1711144398
LVIC01000022
Gammaproteobacteria
Alcanivorax sp. KX64203 [LVIC]
46910
46986
+
Arg
CCT
[ENA]
¡û
>W1711175787
LWEZ01000974
Gammaproteobacteria
Alcanivorax sp. HI0044 [LWEZ]
17088
17012
-
Arg
CCT
[ENA]
¡û
>W1711175794
LWEZ01001154
Gammaproteobacteria
Alcanivorax sp. HI0044 [LWEZ]
523
447
-
Arg
CCT
[ENA]
¡û
>W1711177251
LWFX01001108
Gammaproteobacteria
Alcanivorax sp. HI0083 [LWFX]
4561
4637
+
Arg
CCT
[ENA]
¡û
>C171016560
CP012331
Gammaproteobacteria
Alloalcanivorax xenomutans P40 [CP012331]
3187952
3187876
-
Arg
CCT
-
¡û
>W131034033
AJGP01000006
Gammaproteobacteria
Isoalcanivorax pacificus W11-5 [AJGP]
190766
190690
-
Arg
CCT
[ENA]
¡û
>C000291
AM286690
Gammaproteobacteria
Alcanivorax borkumensis SK2 [AM286690]
2067041
2067117
+
Arg
CCT
[Ensembl]
¡û
>W08010904
ABRW01000018
Gammaproteobacteria
Alcanivorax sp. DG881 [ABRW]
481
557
+
Arg
CCT
[ENA]
¡û
>WENV181309917
OFIY01006977
[OFIY] marine metagenome; sea ice
93
17
-
Arg
CCT
[ENA]
¢þ
>WENV181323105
OFKW01006699
[OFKW] marine metagenome; sea ice
527
451
-
Arg
CCT
[ENA]
¢þ
>WENV181324401
OFLE01004210
[OFLE] marine metagenome; sea ice
739
663
-
Arg
CCT
[ENA]
¢þ
>W141152589
AXBX01000028
Gammaproteobacteria
Alcanivorax sp. PN-3 [AXBX]
33735
33659
-
Arg
CCT
[ENA]
¡û
>W141221271
AZYR01000008
Gammaproteobacteria
Alcanivorax sp. 97CO-5 [AZYR]
13650
13726
+
Arg
CCT
[ENA]
¡û
>WENV182541737
OJAU01000869
[OJAU] seawater metagenome; Sea water
4873
4797
-
Arg
CCT
[ENA]
¢þ
>WENV182541771
OJAU01001284
[OJAU] seawater metagenome; Sea water
5927
5851
-
Arg
CCT
[ENA]
¢þ
>WENV182541933
OJAV01000029
[OJAV] seawater metagenome; Sea water
49986
49910
-
Arg
CCT
[ENA]
¢þ
>WENV182542316
OJAY01000051
[OJAY] seawater metagenome; Sea water
57015
56939
-
Arg
CCT
[ENA]
¢þ
>WENV182542753
OJAZ01001657
[OJAZ] seawater metagenome; Sea water
6
82
+
Arg
CCT
[ENA]
¢þ
>WENV182543896
OJBD01000670
[OJBD] seawater metagenome; Sea water
5366
5290
-
Arg
CCT
[ENA]
¢þ
>WENV182544828
OJBK01000043
[OJBK] seawater metagenome; Sea water
288
364
+
Arg
CCT
[ENA]
¢þ
>WENV182546017
OJBO01000405
[OJBO] seawater metagenome; Sea water
289
365
+
Arg
CCT
[ENA]
¢þ
>WENV182547624
OJBT01000087
[OJBT] seawater metagenome; Sea water
562
638
+
Arg
CCT
[ENA]
¢þ
>WENV182548763
OJBX01000088
[OJBX] seawater metagenome; Sea water
41809
41885
+
Arg
CCT
[ENA]
¢þ
>WENV182549386
OJBY01000559
[OJBY] seawater metagenome; Sea water
14855
14779
-
Arg
CCT
[ENA]
¢þ
>WENV182549603
OJBY01003166
[OJBY] seawater metagenome; Sea water
104
180
+
Arg
CCT
[ENA]
¢þ
>WENV182549970
OJBZ01001025
[OJBZ] seawater metagenome; Sea water
11127
11051
-
Arg
CCT
[ENA]
¢þ
>WENV182551018
OJCB01006126
[OJCB] seawater metagenome; Sea water
2164
2088
-
Arg
CCT
[ENA]
¢þ
>WENV182553242
OJCR01000775
[OJCR] seawater metagenome; Sea water
3546
3622
+
Arg
CCT
[ENA]
¢þ
>WENV182554027
OJCS01007771
[OJCS] seawater metagenome; Sea water
505
581
+
Arg
CCT
[ENA]
¢þ
>WENV182555024
OJCY01000589
[OJCY] seawater metagenome; Sea water
7321
7397
+
Arg
CCT
[ENA]
¢þ
>WENV182555364
OJDA01000080
[OJDA] seawater metagenome; Sea water
12771
12847
+
Arg
CCT
[ENA]
¢þ
>WENV182555760
OJDD01000381
[OJDD] seawater metagenome; Sea water
37
113
+
Arg
CCT
[ENA]
¢þ
>WENV182556988
OJDI01000173
[OJDI] seawater metagenome; Sea water
77
1
-
Arg
CCT
[ENA]
¢þ
>WENV182557609
OJDK01000732
[OJDK] seawater metagenome; Sea water
7493
7417
-
Arg
CCT
[ENA]
¢þ
>WENV182557633
OJDK01000927
[OJDK] seawater metagenome; Sea water
3537
3613
+
Arg
CCT
[ENA]
¢þ
>WENV182558305
OJDL01037297
[OJDL] seawater metagenome; Sea water
250
326
+
Arg
CCT
[ENA]
¢þ
>WENV182559746
OJDQ01002622
[OJDQ] seawater metagenome; Sea water
1986
2062
+
Arg
CCT
[ENA]
¢þ
>WENV182561447
OJDW01000083
[OJDW] seawater metagenome; Sea water
34135
34059
-
Arg
CCT
[ENA]
¢þ
>WENV182562293
OJDZ01000548
[OJDZ] seawater metagenome; Sea water
4015
4091
+
Arg
CCT
[ENA]
¢þ
>WENV182565135
OJEG01006322
[OJEG] seawater metagenome; Sea water
641
565
-
Arg
CCT
[ENA]
¢þ
>WENV182565502
OJEH01008442
[OJEH] seawater metagenome; Sea water
1716
1640
-
Arg
CCT
[ENA]
¢þ
>WENV182566307
OJEJ01009581
[OJEJ] seawater metagenome; Sea water
494
570
+
Arg
CCT
[ENA]
¢þ
>WENV182566948
OJEN01000125
[OJEN] seawater metagenome; Sea water
19693
19769
+
Arg
CCT
[ENA]
¢þ
>WENV182567049
OJEN01000929
[OJEN] seawater metagenome; Sea water
7493
7417
-
Arg
CCT
[ENA]
¢þ
>WENV182567349
OJEO01000137
[OJEO] seawater metagenome; Sea water
548
624
+
Arg
CCT
[ENA]
¢þ
>WENV182568157
OJEQ01003619
[OJEQ] seawater metagenome; Sea water
237
161
-
Arg
CCT
[ENA]
¢þ
>WENV182568544
OJEV01001334
[OJEV] seawater metagenome; Sea water
605
681
+
Arg
CCT
[ENA]
¢þ
>WENV182568773
OJEX01000001
[OJEX] seawater metagenome; Sea water
34135
34059
-
Arg
CCT
[ENA]
¢þ
>WENV182569639
OJFA01001527
[OJFA] seawater metagenome; Sea water
390
466
+
Arg
CCT
[ENA]
¢þ
>WENV182571043
OJFG01000102
[OJFG] seawater metagenome; Sea water
12698
12774
+
Arg
CCT
[ENA]
¢þ
>WENV182572282
OJFL01002376
[OJFL] seawater metagenome; Sea water
3683
3607
-
Arg
CCT
[ENA]
¢þ
>WENV182573339
OJFP01000898
[OJFP] seawater metagenome; Sea water
12487
12563
+
Arg
CCT
[ENA]
¢þ
>WENV182574356
OJFR01006161
[OJFR] seawater metagenome; Sea water
75
151
+
Arg
CCT
[ENA]
¢þ
>WENV182575059
OJFS01030424
[OJFS] seawater metagenome; Sea water
525
449
-
Arg
CCT
[ENA]
¢þ
>WENV182576528
OJFX01055174
[OJFX] seawater metagenome; Sea water
315
239
-
Arg
CCT
[ENA]
¢þ
>WENV182577260
OJGD01000134
[OJGD] seawater metagenome; Sea water
550
626
+
Arg
CCT
[ENA]
¢þ
>WENV182577472
OJGF01002253
[OJGF] seawater metagenome; Sea water
1518
1442
-
Arg
CCT
[ENA]
¢þ
>WENV182577796
OJGI01001109
[OJGI] seawater metagenome; Sea water
573
649
+
Arg
CCT
[ENA]
¢þ
>WENV182578537
OJGO01000771
[OJGO] seawater metagenome; Sea water
4381
4457
+
Arg
CCT
[ENA]
¢þ
>WENV182579064
OJGS01000108
[OJGS] seawater metagenome; Sea water
5628
5552
-
Arg
CCT
[ENA]
¢þ
>WENV182579929
OJGU01000451
[OJGU] seawater metagenome; Sea water
7312
7388
+
Arg
CCT
[ENA]
¢þ
>WENV182580673
OJGW01006820
[OJGW] seawater metagenome; Sea water
1149
1225
+
Arg
CCT
[ENA]
¢þ
>WENV182581340
OJGX01003283
[OJGX] seawater metagenome; Sea water
3323
3399
+
Arg
CCT
[ENA]
¢þ
>WENV182581940
OJGZ01000662
[OJGZ] seawater metagenome; Sea water
221
297
+
Arg
CCT
[ENA]
¢þ
>WENV182582788
OJHC01000091
[OJHC] seawater metagenome; Sea water
290
366
+
Arg
CCT
[ENA]
¢þ
>WENV182583685
OJHE01000283
[OJHE] seawater metagenome; Sea water
37
113
+
Arg
CCT
[ENA]
¢þ
>WENV182584547
OJHG01001478
[OJHG] seawater metagenome; Sea water
3476
3552
+
Arg
CCT
[ENA]
¢þ
>WENV182585697
OJHI01001053
[OJHI] seawater metagenome; Sea water
220
296
+
Arg
CCT
[ENA]
¢þ
>WENV182586033
OJHJ01000370
[OJHJ] seawater metagenome; Sea water
18565
18489
-
Arg
CCT
[ENA]
¢þ
>WENV182586331
OJHK01000070
[OJHK] seawater metagenome; Sea water
47953
48029
+
Arg
CCT
[ENA]
¢þ
>WENV182587319
OJHM01000410
[OJHM] seawater metagenome; Sea water
3095
3171
+
Arg
CCT
[ENA]
¢þ
>WENV182588019
OJHO01000909
[OJHO] seawater metagenome; Sea water
10424
10348
-
Arg
CCT
[ENA]
¢þ
>WENV182588126
OJHO01005432
[OJHO] seawater metagenome; Sea water
998
1074
+
Arg
CCT
[ENA]
¢þ
>WENV182590882
OJIK01002419
[OJIK] seawater metagenome; Sea water
663
739
+
Arg
CCT
[ENA]
¢þ
>WENV182591752
OJIO01003722
[OJIO] seawater metagenome; Sea water
77
1
-
Arg
CCT
[ENA]
¢þ
>WENV182592806
OJIR01037796
[OJIR] seawater metagenome; Sea water
295
219
-
Arg
CCT
[ENA]
¢þ
>WENV182592886
OJIS01000504
[OJIS] seawater metagenome; Sea water
8942
8866
-
Arg
CCT
[ENA]
¢þ
>WENV182594503
OJIV01022915
[OJIV] seawater metagenome; Sea water
320
244
-
Arg
CCT
[ENA]
¢þ
>W141276048
JADM01000013
Gammaproteobacteria
Alcanivorax sp. 43B_GOM-46m [JADM]
5224
5300
+
Arg
CCT
[ENA]
¡û
>WENV183054191
OLGS01000252
[OLGS] seawater metagenome; Sea water
528
604
+
Arg
CCT
[ENA]
¢þ
>WENV183055215
OLGX01000190
[OLGX] seawater metagenome; Sea water
23057
22981
-
Arg
CCT
[ENA]
¢þ
>WENV183057031
OLHK01000756
[OLHK] seawater metagenome; Sea water
3095
3171
+
Arg
CCT
[ENA]
¢þ
>WENV183057340
OLHL01000483
[OLHL] seawater metagenome; Sea water
3547
3623
+
Arg
CCT
[ENA]
¢þ
>WENV183057466
OLHL01002818
[OLHL] seawater metagenome; Sea water
104
180
+
Arg
CCT
[ENA]
¢þ
>WENV183060613
OLHY01000714
[OLHY] seawater metagenome; Sea water
9673
9749
+
Arg
CCT
[ENA]
¢þ
>WENV183062111
OLID01000062
[OLID] seawater metagenome; Sea water
34449
34373
-
Arg
CCT
[ENA]
¢þ
>WENV183614837
OOEA01002839
[OOEA] marine metagenome; sea ice
1240
1164
-
Arg
CCT
[ENA]
¢þ
>WENV183615263
OOEB01000318
[OOEB] marine metagenome; sea ice
1100
1024
-
Arg
CCT
[ENA]
¢þ
>WENV183623134
OOFX01015329
[OOFX] marine metagenome; sea ice
414
338
-
Arg
CCT
[ENA]
¢þ
>WENV183811302
PVBE011569566
[PVBE] marine metagenome; water
81
5
-
Arg
CCT
[ENA]
¢þ
>WENV170015436
AZIG01006974
[AZIG] marine sediment metagenome; enrichment culture of sample MGS-AQ(UA) from oil contaminated terminal site at a crude oil
179427
179351
-
Arg
CCT
[ENA]
¢þ
>WENV170015742
AZII01005870
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
124
200
+
Arg
CCT
[ENA]
¢þ
>WENV170112503
CEGF01001912
[CEGF] microbial mat metagenome; grass silage
573
497
-
Arg
CCT
[ENA]
¢þ
>WENV170763959
LWDU01025746
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
1682
1606
-
Arg
CCT
[ENA]
¢þ
>W1911495062
OBMO01000004
Gammaproteobacteria
Alloalcanivorax xenomutans JC109 [OBMO]
159824
159900
+
Arg
CCT
[ENA]
¡û
>W1810153764
PIXQ01000008
Gammaproteobacteria
Alcanivorax sp. 97CO-6 [PIXQ]
13650
13726
+
Arg
CCT
[ENA]
¡û
>W1810787850
QREA01000001
Gammaproteobacteria
Alcanivorax sp. EA2 [QREA]
516990
517066
+
Arg
CCT
[ENA]
¡û
>C151002473
AP014613
Gammaproteobacteria
Alcanivorax sp. NBRC 101098 [AP014613]
2066449
2066525
+
Arg
CCT
[Ensembl]
¡û
>C151006537
CP004387
Gammaproteobacteria
Isoalcanivorax pacificus W11-5 [CP004387]
2614383
2614459
+
Arg
CCT
[Ensembl]
¡û
>W1610078263
BDAT01000010
Gammaproteobacteria
Alcanivorax sp. NBRC 102028 [BDAT]
48178
48254
+
Arg
CCT
[ENA]
¡û
>W1610109405
CZHF01000026
Gammaproteobacteria
Alloalcanivorax xenomutans dieselolei [CZHF]
84085
84161
+
Arg
CCT
[ENA]
¡û
>C131003679
CP003466
Gammaproteobacteria
Alloalcanivorax dieselolei B5 [CP003466]
3482373
3482297
-
Arg
CCT
[Ensembl]
¡û
>W1610955406
LVIC01000022
Gammaproteobacteria
Alcanivorax sp. KX64203 [LVIC]
46910
46986
+
Arg
CCT
[ENA]
¡û
>W1610984100
LWEZ01000974
Gammaproteobacteria
Alcanivorax sp. HI0044 [LWEZ]
17088
17012
-
Arg
CCT
[ENA]
¡û
>W1610984107
LWEZ01001154
Gammaproteobacteria
Alcanivorax sp. HI0044 [LWEZ]
523
447
-
Arg
CCT
[ENA]
¡û
>W1610985564
LWFX01001108
Gammaproteobacteria
Alcanivorax sp. HI0083 [LWFX]
4561
4637
+
Arg
CCT
[ENA]
¡û
>W1710076822
BDAT01000010
Gammaproteobacteria
Alcanivorax sp. NBRC 102028 [BDAT]
48178
48254
+
Arg
CCT
[ENA]
¡û
>W1710112109
CZHF01000026
Gammaproteobacteria
Alloalcanivorax xenomutans dieselolei [CZHF]
84085
84161
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK