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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180064 (35 seq.)
>W1711081010
LSRN01000001
Bacillota
Alkalibacterium sp. 20 [LSRN]
120058
119985
-
Arg
ACG
[ENA]
¡û
>W1711081055
LSRN01000086
Bacillota
Alkalibacterium sp. 20 [LSRN]
716
789
+
Arg
ACG
[ENA]
¡û
>W131166018
ARCB01000011
Bacillota
Streptococcus didelphis DSM 15616 [ARCB]
58814
58738
-
Arg
ACG
[ENA]
¡û
>W131166032
ARCC01000001
Bacillota
Streptococcus entericus DSM 14446 [ARCC]
142750
142677
-
Arg
ACG
[ENA]
¡û
>W131166159
ARCF01000011
Bacillota
Streptococcus merionis DSM 19192 [ARCF]
86728
86655
-
Arg
ACG
[ENA]
¡û
>W131166173
ARCF01000021
Bacillota
Streptococcus merionis DSM 19192 [ARCF]
13835
13762
-
Arg
ACG
[ENA]
¡û
>C171067224
CP017761
Bacillota
Marinilactibacillus sp. 15R [CP017761]
1403686
1403759
+
Arg
ACG
-
¡û
>C171067250
CP017761
Bacillota
Marinilactibacillus sp. 15R [CP017761]
436906
436833
-
Arg
ACG
-
¡û
>W141008839
AHAA01000001
Bacillota
Streptococcus urinalis FB127-CNA-2 [AHAA]
199214
199287
+
Arg
ACG
[ENA]
¡û
>W141008862
AHAA01000006
Bacillota
Streptococcus urinalis FB127-CNA-2 [AHAA]
302
375
+
Arg
ACG
[ENA]
¡û
>WENV180284255
OBID01023422
[OBID] metagenome; sludge
197
124
-
Arg
ACG
[ENA]
¢þ
>WENV181199546
OERH01005539
[OERH] metagenome; water of meat washing
487
560
+
Arg
ACG
[ENA]
¢þ
>W141285311
JANL01000023
Bacillota
Alkalibacterium sp. AK22 [JANL]
1511
1438
-
Arg
ACG
[ENA]
¡û
>W141285336
JANL01000039
Bacillota
Alkalibacterium sp. AK22 [JANL]
57726
57799
+
Arg
ACG
[ENA]
¡û
>WENV170655897
JTFN01092569
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
226
150
-
Arg
ACG
[ENA]
¢þ
>WENV170658134
JTFP01058924
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
197
121
-
Arg
ACG
[ENA]
¢þ
>WENV170727251
LTCX01001777
[LTCX] gut metagenome; intestine contents (feces)
390
317
-
Arg
ACG
[ENA]
¢þ
>WENV170857609
MDTB01011158
[MDTB] marine metagenome; seawater
3254
3327
+
Arg
ACG
[ENA]
¢þ
>C181224443
LT906439
Bacillota
Streptococcus merionis NCTC13788 [LT906439]
1628303
1628230
-
Arg
ACG
-
¡û
>C181224458
LT906439
Bacillota
Streptococcus merionis NCTC13788 [LT906439]
1468814
1468741
-
Arg
ACG
-
¡û
>C191206591
LR134323
Bacillota
Streptococcus urinalis NCTC13766 [LR134323]
871297
871370
+
Arg
ACG
-
¡û
>C191206605
LR134323
Bacillota
Streptococcus urinalis NCTC13766 [LR134323]
2103055
2102982
-
Arg
ACG
-
¡û
>C191206615
LR134323
Bacillota
Streptococcus urinalis NCTC13766 [LR134323]
2097192
2097119
-
Arg
ACG
-
¡û
>W1910378006
FUKW01000009
Bacillota
Marinilactibacillus psychrotolerans 42ea [FUKW]
226
299
+
Arg
ACG
[ENA]
¡û
>W1910439796
FWDP01000003
Bacillota
Marinilactibacillus piezotolerans Marseille-P2378 [FWDP]
412689
412762
+
Arg
ACG
[ENA]
¡û
>W1910439821
FWDP01000004
Bacillota
Marinilactibacillus piezotolerans Marseille-P2378 [FWDP]
985
1058
+
Arg
ACG
[ENA]
¡û
>W1810364847
PVTO01000024
Bacillota
Alkalibacterium olivapovliticus DSM 13175 [PVTO]
38761
38687
-
Arg
ACG
[ENA]
¡û
>W1810364875
PVTO01000052
Bacillota
Alkalibacterium olivapovliticus DSM 13175 [PVTO]
1562
1636
+
Arg
ACG
[ENA]
¡û
>W1510562953
CTEN01000008
Bacillota
Streptococcus varani FF10 [CTEN]
51312
51239
-
Arg
ACG
[ENA]
¡û
>W1511442236
JURJ01000044
Bacillota
Streptococcus anginosus 83_SANG [JURJ]
79
6
-
Arg
ACG
[ENA]
¡û
>W11149794
AEUZ01000002
Bacillota
Streptococcus urinalis 2285-97 [AEUZ]
45055
44982
-
Arg
ACG
[ENA]
¡û
>W11149826
AEUZ01000004
Bacillota
Streptococcus urinalis 2285-97 [AEUZ]
733289
733216
-
Arg
ACG
[ENA]
¡û
>W1710542074
FNYW01000020
Bacillota
Alkalibacterium gilvum [FNYW]
93
20
-
Arg
ACG
[ENA]
¡û
>W1710543241
FNZU01000007
Bacillota
Alkalibacterium pelagium [FNZU]
12024
11950
-
Arg
ACG
[ENA]
¡û
>W1710566982
FOSJ01000057
Bacillota
Marinilactibacillus piezotolerans [FOSJ]
2489
2416
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK