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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180072 (109 seq.)
>W1711540063
MLZL01000007
Actinomycetota
Bifidobacterium animalis subsp. lactis [MLZL]
26654
26736
+
Tyr
GTA
[ENA]
¡û
>W131232728
AUJM01000011
Actinomycetota
Bifidobacterium sp. AGR2158 [AUJM]
496316
496234
-
Tyr
GTA
[ENA]
¡û
>WENV180217514
OBAR01002143
[OBAR] human gut metagenome; human gut
13469
13387
-
Tyr
GTA
[ENA]
¢þ
>WENV180277632
OBHX01000439
[OBHX] metagenome; feces
13696
13778
+
Tyr
GTA
[ENA]
¢þ
>WENV180293381
OBIX01051545
[OBIX] human gut metagenome; human gut
211
293
+
Tyr
GTA
[ENA]
¢þ
>WENV180326622
OBKS01119488
[OBKS] human gut metagenome; human gut
218
136
-
Tyr
GTA
[ENA]
¢þ
>WENV180333059
OBLF01000175
[OBLF] metagenome; feces
25693
25611
-
Tyr
GTA
[ENA]
¢þ
>WENV180347804
OBLO01001319
[OBLO] metagenome; feces
671
753
+
Tyr
GTA
[ENA]
¢þ
>WENV180462566
OBYB01008956
[OBYB] human gut metagenome; faeces
55
137
+
Tyr
GTA
[ENA]
¢þ
>WENV180463800
OBYC01040147
[OBYC] human gut metagenome; faeces
111
29
-
Tyr
GTA
[ENA]
¢þ
>WENV180495846
OCAC01000018
[OCAC] human gut metagenome; faeces
7963
8045
+
Tyr
GTA
[ENA]
¢þ
>WENV180598616
OCPN01000003
[OCPN] human gut metagenome; faeces
128432
128350
-
Tyr
GTA
[ENA]
¢þ
>WENV181434614
OGDF01001096
[OGDF] human gut metagenome; human gut
1096
1014
-
Tyr
GTA
[ENA]
¢þ
>WENV181439580
OGDN01000057
[OGDN] human gut metagenome; human gut
102058
101976
-
Tyr
GTA
[ENA]
¢þ
>W141169157
AXVO01000014
Actinomycetota
Bifidobacterium choerinum DSM 20434 [AXVO]
115259
115177
-
Tyr
GTA
[ENA]
¡û
>WENV181752360
OGQQ01003989
[OGQQ] human gut metagenome; faeces
7918
8000
+
Tyr
GTA
[ENA]
¢þ
>W08009131
ABOT01000002
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [ABOT]
163091
163173
+
Tyr
GTA
[ENA]
¡û
>W141258208
CBWX010000073
Actinomycetota
Bifidobacterium animalis subsp. lactis CECT 8145 [CBWX]
1414985
1414903
-
Tyr
GTA
[ENA]
¡û
>WENV183136015
OLOF01000003
[OLOF] human gut metagenome; faeces
96507
96589
+
Tyr
GTA
[ENA]
¢þ
>WENV183147345
OLON01000086
[OLON] human gut metagenome; faeces
26612
26694
+
Tyr
GTA
[ENA]
¢þ
>WENV183171312
OLPC01000031
[OLPC] human gut metagenome; faeces
26497
26579
+
Tyr
GTA
[ENA]
¢þ
>WENV183174142
OLPE01000302
[OLPE] human gut metagenome; faeces
41923
41841
-
Tyr
GTA
[ENA]
¢þ
>WENV183214209
OLQE01002803
[OLQE] human gut metagenome; faeces
6621
6539
-
Tyr
GTA
[ENA]
¢þ
>WENV183291101
OLSI01000206
[OLSI] human gut metagenome; faeces
13584
13666
+
Tyr
GTA
[ENA]
¢þ
>WENV183297495
OLSM01003797
[OLSM] human gut metagenome; faeces
8057
8139
+
Tyr
GTA
[ENA]
¢þ
>WENV183562511
OOBW01000176
[OOBW] human gut metagenome; human gut
5491
5409
-
Tyr
GTA
[ENA]
¢þ
>WENV183792821
PPYF01463496
[PPYF] human gut metagenome; stool from patient with Crohn's disease
4352
4270
-
Tyr
GTA
[ENA]
¢þ
>WENV170636520
JFBN01301599
[JFBN] chicken gut metagenome; ceca of Broiler chicken
1494
1576
+
Tyr
GTA
[ENA]
¢þ
>C181023416
CP017098
Actinomycetota
Bifidobacterium animalis BL3 [CP017098]
445926
446008
+
Tyr
GTA
-
¡û
>C181030120
CP018044
Actinomycetota
Bifidobacterium choerinum FMB-1 [CP018044]
1115265
1115347
+
Tyr
GTA
-
¡û
>C181071782
CP022724
Actinomycetota
Bifidobacterium animalis subsp. lactis S7 [CP022724]
947982
948064
+
Tyr
GTA
-
¡û
>C191057528
CP028460
Actinomycetota
Bifidobacterium animalis subsp. animalis CNCM I-4602 [CP028460]
465624
465706
+
Tyr
GTA
-
¡û
>W141523657
JGYM01000002
Actinomycetota
Bifidobacterium animalis subsp. animalis [JGYM]
97317
97399
+
Tyr
GTA
[ENA]
¡û
>C191073842
CP031154
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [CP031154]
445740
445822
+
Tyr
GTA
-
¡û
>W141524064
JGYU01000003
Actinomycetota
Bifidobacterium choerinum [JGYU]
135845
135927
+
Tyr
GTA
[ENA]
¡û
>W141524249
JGYX01000005
Actinomycetota
Bifidobacterium pullorum gallinarum [JGYX]
117633
117551
-
Tyr
GTA
[ENA]
¡û
>C191078848
CP031703
Actinomycetota
Bifidobacterium animalis subsp. lactis IDCC4301 [CP031703]
1726505
1726423
-
Tyr
GTA
-
¡û
>W141524828
JGZJ01000009
Actinomycetota
Bifidobacterium pullorum [JGZJ]
55229
55147
-
Tyr
GTA
[ENA]
¡û
>W141524946
JGZM01000002
Actinomycetota
Bifidobacterium pullorum DSM 6531 = LMG 14934 [JGZM]
324835
324917
+
Tyr
GTA
[ENA]
¡û
>C191143390
CP035464
Actinomycetota
Bifidobacterium pullorum subsp. gallinarum CACC 514 [CP035464]
2088625
2088543
-
Tyr
GTA
-
¡û
>C191144095
CP035497
Actinomycetota
Bifidobacterium animalis 01 [CP035497]
445873
445955
+
Tyr
GTA
-
¡û
>W1910179781
BJKG01000010
Actinomycetota
Bifidobacterium animalis J063 [BJKG]
176757
176675
-
Tyr
GTA
[ENA]
¡û
>W1910179821
BJKH01000011
Actinomycetota
Bifidobacterium animalis J218 [BJKH]
858518
858436
-
Tyr
GTA
[ENA]
¡û
>W1910179851
BJKI01000001
Actinomycetota
Bifidobacterium animalis J231 [BJKI]
176768
176686
-
Tyr
GTA
[ENA]
¡û
>W1910342667
FTRE01000001
Actinomycetota
Bifidobacterium animalis [FTRE]
163288
163370
+
Tyr
GTA
[ENA]
¡û
>W1910343286
FTRP01000001
Actinomycetota
Bifidobacterium animalis [FTRP]
163289
163371
+
Tyr
GTA
[ENA]
¡û
>C141002639
CP003941
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27673 [CP003941]
450304
450386
+
Tyr
GTA
[Ensembl]
¡û
>W1910814831
MVOG01000003
Actinomycetota
Bifidobacterium italicum 70 [MVOG]
49133
49051
-
Tyr
GTA
[ENA]
¡û
>W1910814887
MVOH01000006
Actinomycetota
Bifidobacterium criceti 71 [MVOH]
395876
395794
-
Tyr
GTA
[ENA]
¡û
>W1910829198
MWWX01000002
Actinomycetota
Bifidobacterium lemurum DSM 28807 [MWWX]
128194
128276
+
Tyr
GTA
[ENA]
¡û
>W1910829333
MWWZ01000010
Actinomycetota
Bifidobacterium eulemuris DSM 100216 [MWWZ]
62456
62374
-
Tyr
GTA
[ENA]
¡û
>W1910910819
NHMR02000001
Actinomycetota
Bifidobacterium animalis subsp. animalis YL2 [NHMR]
1030869
1030787
-
Tyr
GTA
[ENA]
¡û
>W1910923017
NIGQ01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis LMG P-17502_2 [NIGQ]
657341
657259
-
Tyr
GTA
[ENA]
¡û
>W1910923066
NIGR01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis LMG P-17502_1 [NIGR]
657341
657259
-
Tyr
GTA
[ENA]
¡û
>C09100986
CP001213
Actinomycetota
Bifidobacterium animalis subsp. lactis AD011 [CP001213]
445471
445553
+
Tyr
GTA
[Ensembl]
¡û
>C09101035
CP001515
Actinomycetota
Bifidobacterium animalis subsp. lactis Bl-04 Bl-04; ATCC SD5219 [CP001515]
445870
445952
+
Tyr
GTA
[Ensembl]
¡û
>C09101084
CP001606
Actinomycetota
Bifidobacterium animalis subsp. lactis DSM 10140 [CP001606]
445871
445953
+
Tyr
GTA
[Ensembl]
¡û
>W1911079604
NMYC01000005
Actinomycetota
Bifidobacterium anseris 72 [NMYC]
556139
556221
+
Tyr
GTA
[ENA]
¡û
>W1911768221
QXGI01000011
Actinomycetota
Bifidobacterium castoris 2020B [QXGI]
40024
39942
-
Tyr
GTA
[ENA]
¡û
>W1911768336
QXGK01000030
Actinomycetota
Bifidobacterium samirii 2033B [QXGK]
11495
11577
+
Tyr
GTA
[ENA]
¡û
>W1810084963
PESQ01000002
Actinomycetota
Bifidobacterium animalis subsp. lactis BB-12 [PESQ]
128425
128343
-
Tyr
GTA
[ENA]
¡û
>W1810121966
PHUS01000004
Actinomycetota
Bifidobacterium animalis subsp. lactis BM 25 [PHUS]
26657
26739
+
Tyr
GTA
[ENA]
¡û
>W1810541560
QDIK01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis DS28_2 [QDIK]
112050
112132
+
Tyr
GTA
[ENA]
¡û
>W1810541626
QDIL01000002
Actinomycetota
Bifidobacterium animalis subsp. lactis DS27_2 [QDIL]
112026
112108
+
Tyr
GTA
[ENA]
¡û
>W1810541729
QDIN01000002
Actinomycetota
Bifidobacterium animalis subsp. lactis DS24_2 [QDIN]
327244
327162
-
Tyr
GTA
[ENA]
¡û
>W1810541775
QDIO01000020
Actinomycetota
Bifidobacterium animalis subsp. lactis DS23_2 [QDIO]
21854
21936
+
Tyr
GTA
[ENA]
¡û
>W1810541820
QDIP01000002
Actinomycetota
Bifidobacterium animalis DS2_2 [QDIP]
112031
112113
+
Tyr
GTA
[ENA]
¡û
>W1810541920
QDIR01000002
Actinomycetota
Bifidobacterium animalis DS15_2 [QDIR]
112024
112106
+
Tyr
GTA
[ENA]
¡û
>W1810542021
QDIT01000001
Actinomycetota
Bifidobacterium animalis DS11_2 [QDIT]
858484
858402
-
Tyr
GTA
[ENA]
¡û
>W1810542070
QDIU01000001
Actinomycetota
Bifidobacterium animalis DS1_2 [QDIU]
858485
858403
-
Tyr
GTA
[ENA]
¡û
>W1810542133
QDIV01000075
Actinomycetota
Bifidobacterium animalis subsp. lactis CF3_2 [QDIV]
26644
26726
+
Tyr
GTA
[ENA]
¡û
>W1810542299
QDIZ01000004
Actinomycetota
Bifidobacterium animalis DS20_2 [QDIZ]
112023
112105
+
Tyr
GTA
[ENA]
¡û
>W1810837811
QSSU01000003
Actinomycetota
Bifidobacterium animalis TF04-14 [QSSU]
96498
96580
+
Tyr
GTA
[ENA]
¡û
>W1810839884
QSUF01000002
Actinomycetota
Bifidobacterium animalis OM05-7AA [QSUF]
128408
128326
-
Tyr
GTA
[ENA]
¡û
>C151026458
CP007522
Actinomycetota
Bifidobacterium animalis subsp. lactis KLDS2.0603 [CP007522]
445704
445786
+
Tyr
GTA
[Ensembl]
¡û
>C151033679
CP007755
Actinomycetota
Bifidobacterium animalis RH [CP007755]
446229
446311
+
Tyr
GTA
[Ensembl]
¡û
>C151042201
CP009045
Actinomycetota
Bifidobacterium animalis subsp. lactis BF052 [CP009045]
445705
445787
+
Tyr
GTA
[Ensembl]
¡û
>C151068772
CP010433
Actinomycetota
Bifidobacterium animalis A6 [CP010433]
445872
445954
+
Tyr
GTA
[Ensembl]
¡û
>C10101297
CP001853
Actinomycetota
Bifidobacterium animalis subsp. lactis BB-12 [CP001853]
1081304
1081386
+
Tyr
GTA
[Ensembl]
¡û
>C10101339
CP001892
Actinomycetota
Bifidobacterium animalis subsp. lactis V9 [CP001892]
445872
445954
+
Tyr
GTA
[Ensembl]
¡û
>C11101895
CP003039
Actinomycetota
Bifidobacterium animalis subsp. lactis BLC1 [CP003039]
445866
445948
+
Tyr
GTA
[Ensembl]
¡û
>C11101944
CP002915
Actinomycetota
Bifidobacterium animalis subsp. lactis CNCM I-2494 [CP002915]
445876
445958
+
Tyr
GTA
[Ensembl]
¡û
>C121002602
CP002567
Actinomycetota
Bifidobacterium animalis subsp. animalis ATCC 25527 [CP002567]
465744
465826
+
Tyr
GTA
[Ensembl]
¡û
>C121013638
CP003497
Actinomycetota
Bifidobacterium animalis subsp. lactis B420 [CP003497]
445869
445951
+
Tyr
GTA
[Ensembl]
¡û
>C121013687
CP003498
Actinomycetota
Bifidobacterium animalis subsp. lactis Bi-07 [CP003498]
445871
445953
+
Tyr
GTA
[Ensembl]
¡û
>C161087435
CP015407
Actinomycetota
Bifidobacterium animalis subsp. animalis YL2 [CP015407]
909629
909711
+
Tyr
GTA
[Ensembl]
¡û
>W121031659
AHGW01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis BS 01 [AHGW]
507746
507828
+
Tyr
GTA
[ENA]
¡û
>W1610027684
AWFK01000003
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0483 [AWFK]
7078
6996
-
Tyr
GTA
[ENA]
¡û
>W1610027755
AWFL01000006
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27536 [AWFL]
111797
111879
+
Tyr
GTA
[ENA]
¡û
>W1610027802
AWFM01000005
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27674 [AWFM]
111807
111889
+
Tyr
GTA
[ENA]
¡û
>W1610027847
AWFN01000003
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0499 [AWFN]
765036
764954
-
Tyr
GTA
[ENA]
¡û
>W1610027902
AWFO01000006
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 1489 [AWFO]
92058
92140
+
Tyr
GTA
[ENA]
¡û
>W1610027962
AWFP01000007
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27673 [AWFP]
181376
181294
-
Tyr
GTA
[ENA]
¡û
>W1610027987
AWFQ01000001
Actinomycetota
Bifidobacterium animalis subsp. animalis ATCC 27672 [AWFQ]
514310
514392
+
Tyr
GTA
[ENA]
¡û
>W1610083118
CBUQ010000007
Actinomycetota
Bifidobacterium animalis subsp. animalis IM386 [CBUQ]
25526
25608
+
Tyr
GTA
[ENA]
¡û
>C131012127
CP004053
Actinomycetota
Bifidobacterium animalis subsp. lactis Bl12 [CP004053]
445735
445817
+
Tyr
GTA
[Ensembl]
¡û
>W1610518562
JDTM01000002
Actinomycetota
Bifidobacterium pullorum DSM 6531 = LMG 14934 [JDTM]
317273
317355
+
Tyr
GTA
[ENA]
¡û
>W1610519606
JDUI01000014
Actinomycetota
Bifidobacterium pullorum DSM 20433 [JDUI]
7517
7435
-
Tyr
GTA
[ENA]
¡û
>W1610519624
JDUJ01000009
Actinomycetota
Bifidobacterium choerinum DSM 20434 [JDUJ]
16675
16757
+
Tyr
GTA
[ENA]
¡û
>W1610519810
JDUN01000001
Actinomycetota
Bifidobacterium pullorum DSM 20670 [JDUN]
115262
115180
-
Tyr
GTA
[ENA]
¡û
>W1710023892
AWFK01000003
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0483 [AWFK]
7078
6996
-
Tyr
GTA
[ENA]
¡û
>W1710023957
AWFN01000003
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0499 [AWFN]
765036
764954
-
Tyr
GTA
[ENA]
¡û
>W1710024012
AWFO01000006
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 1489 [AWFO]
92058
92140
+
Tyr
GTA
[ENA]
¡û
>W1710082907
BDIS01000011
Actinomycetota
Bifidobacterium lemurum [BDIS]
175173
175255
+
Tyr
GTA
[ENA]
¡û
>W1710088238
CBUQ010000007
Actinomycetota
Bifidobacterium animalis subsp. animalis IM386 [CBUQ]
25526
25608
+
Tyr
GTA
[ENA]
¡û
>W1710614082
JDTM01000002
Actinomycetota
Bifidobacterium pullorum DSM 6531 = LMG 14934 [JDTM]
317273
317355
+
Tyr
GTA
[ENA]
¡û
>W1710615061
JDUI01000014
Actinomycetota
Bifidobacterium pullorum DSM 20433 [JDUI]
7517
7435
-
Tyr
GTA
[ENA]
¡û
>W1710615079
JDUJ01000009
Actinomycetota
Bifidobacterium choerinum DSM 20434 [JDUJ]
16675
16757
+
Tyr
GTA
[ENA]
¡û
>W1710615223
JDUN01000001
Actinomycetota
Bifidobacterium pullorum DSM 20670 [JDUN]
115262
115180
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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