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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180105 (82 seq.)
>W1710890902
LNCE01000027
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
35128
35052
-
Pro
CGG
[ENA]
¡û
>W1710924013
LOCQ01000050
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
111020
111096
+
Pro
CGG
[ENA]
¡û
>W1711033321
LRHV01000003
Betaproteobacteria
Duganella sp. HH105 [LRHV]
1711
1787
+
Pro
CGG
[ENA]
¡û
>W1711033432
LRHW01000100
Betaproteobacteria
Janthinobacterium lividum [LRHW]
77617
77693
+
Pro
CGG
[ENA]
¡û
>W1711033482
LRHX01000014
Betaproteobacteria
Janthinobacterium sp. MP5059B [LRHX]
82723
82647
-
Pro
CGG
[ENA]
¡û
>W1711033519
LRHY01000062
Betaproteobacteria
Janthinobacterium sp. HH100 [LRHY]
78350
78274
-
Pro
CGG
[ENA]
¡û
>W1711033583
LRHZ01000010
Betaproteobacteria
Janthinobacterium sp. HH102 [LRHZ]
159200
159276
+
Pro
CGG
[ENA]
¡û
>W1711033639
LRIA01000036
Betaproteobacteria
Janthinobacterium sp. HH103 [LRIA]
93872
93948
+
Pro
CGG
[ENA]
¡û
>W1711033712
LRIB01000034
Betaproteobacteria
Janthinobacterium sp. HH104 [LRIB]
214036
214112
+
Pro
CGG
[ENA]
¡û
>W1711033778
LRIC01000051
Betaproteobacteria
Janthinobacterium sp. HH106 [LRIC]
78456
78380
-
Pro
CGG
[ENA]
¡û
>W1711033830
LRID01000085
Betaproteobacteria
Janthinobacterium sp. HH107 [LRID]
62968
62892
-
Pro
CGG
[ENA]
¡û
>W1711046655
LRON01000002
Betaproteobacteria
Duganella sp. HH101 [LRON]
264561
264485
-
Pro
CGG
[ENA]
¡û
>W1711583845
MNXT01000096
Betaproteobacteria
Betaproteobacteria bacterium CG2_30_59_46 [MNXT]
29039
28963
-
Pro
CGG
[ENA]
¡û
>W1712004436
NEGX01000006
Betaproteobacteria
Janthinobacterium sp. GW460W [NEGX]
136723
136647
-
Pro
CGG
[ENA]
¡û
>W1712004547
NEGY01000023
Betaproteobacteria
Janthinobacterium sp. GW460P [NEGY]
1490
1414
-
Pro
CGG
[ENA]
¡û
>W1712004591
NEGZ01000009
Betaproteobacteria
Janthinobacterium sp. GW458P [NEGZ]
74745
74669
-
Pro
CGG
[ENA]
¡û
>W1712004680
NEHA01000018
Betaproteobacteria
Janthinobacterium sp. GW456W [NEHA]
346
270
-
Pro
CGG
[ENA]
¡û
>W1712004801
NEHB01000026
Betaproteobacteria
Janthinobacterium sp. GW456P [NEHB]
346
270
-
Pro
CGG
[ENA]
¡û
>C171010492
CP011319
Betaproteobacteria
Janthinobacterium sp. 1_2014MBL_MicDiv [CP011319]
5053047
5053123
+
Pro
CGG
-
¡û
>C171095031
CP019510
Betaproteobacteria
Janthinobacterium sp. LM6 [CP019510]
1409863
1409787
-
Pro
CGG
-
¡û
>W131050107
AMWD01000001
Betaproteobacteria
Janthinobacterium sp. HH01 [AMWD]
1662392
1662316
-
Pro
CGG
[ENA]
¡û
>W131106738
APFF01000039
Betaproteobacteria
Janthinobacterium sp. CG3 [APFF]
112507
112431
-
Pro
CGG
[ENA]
¡û
>W131160010
AQWD01000193
Betaproteobacteria
Oxalobacteraceae bacterium JGI 0001004-K23 [AQWD]
36055
36131
+
Pro
CGG
[ENA]
¡û
>W131179104
ARMC01000028
Betaproteobacteria
Oxalobacteraceae bacterium AB_14 [ARMC]
502762
502686
-
Pro
CGG
[ENA]
¡û
>WENV181380065
OFRD01026336
[OFRD] wastewater metagenome; Exp Tend CN 100WW
79
3
-
Pro
CGG
[ENA]
¢þ
>WENV183693315
ORMF012061002
[ORMF] groundwater metagenome; groundwater
31896
31820
-
Pro
CGG
[ENA]
¢þ
>WENV170557737
CXWL01035799
[CXWL] groundwater metagenome; biofilm material
76
1
-
Pro
CGG
[ENA]
¢þ
>WENV170557738
CXWL01035800
[CXWL] groundwater metagenome; biofilm material
5904
5980
+
Pro
CGG
[ENA]
¢þ
>WENV170558987
CXWL01104398
[CXWL] groundwater metagenome; biofilm material
25384
25308
-
Pro
CGG
[ENA]
¢þ
>WENV170559010
CXWL01105708
[CXWL] groundwater metagenome; biofilm material
1243
1319
+
Pro
CGG
[ENA]
¢þ
>WENV170559371
CXWL01120590
[CXWL] groundwater metagenome; biofilm material
1497
1573
+
Pro
CGG
[ENA]
¢þ
>WENV170559426
CXWL01122948
[CXWL] groundwater metagenome; biofilm material
1293
1369
+
Pro
CGG
[ENA]
¢þ
>W141484469
JFYR01000018
Betaproteobacteria
Janthinobacterium lividum [JFYR]
94708
94632
-
Pro
CGG
[ENA]
¡û
>C181081169
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
1421348
1421272
-
Pro
CGG
-
¡û
>C181102716
CP024608
Betaproteobacteria
Massilia violaceinigra B2 [CP024608]
1913746
1913670
-
Pro
CGG
-
¡û
>C191098182
CP033019
Betaproteobacteria
Janthinobacterium agaricidamnosum BHSEK [CP033019]
687934
687858
-
Pro
CGG
-
¡û
>C191188171
CP041185
Betaproteobacteria
Janthinobacterium tructae SNU WT3 [CP041185]
5284681
5284605
-
Pro
CGG
-
¡û
>W141821541
JQNP01000001
Betaproteobacteria
Janthinobacterium sp. RA13 [JQNP]
5444435
5444359
-
Pro
CGG
[ENA]
¡û
>C141000187
AP013066
Betaproteobacteria
Sulfuricella denitrificans skB26 [AP013066]
2150232
2150156
-
Pro
CGG
[Ensembl]
¡û
>W1911199869
NRDQ01000055
Betaproteobacteria
Janthinobacterium sp. AD80 [NRDQ]
8796
8872
+
Pro
CGG
[ENA]
¡û
>W1911802833
QYUP01000016
Betaproteobacteria
Massilia cavernae K1S02-61 [QYUP]
29011
29087
+
Pro
CGG
[ENA]
¡û
>W1810062350
PDOB01000002
Betaproteobacteria
Massilia psychrophila JCM 30813 [PDOB]
91738
91814
+
Pro
CGG
[ENA]
¡û
>W1810062424
PDOC01000004
Betaproteobacteria
Massilia eurypsychrophila JCM 30074 [PDOC]
124537
124613
+
Pro
CGG
[ENA]
¡û
>W1810068153
PDZI01000003
Betaproteobacteria
Janthinobacterium sp. BJB303 [PDZI]
504252
504328
+
Pro
CGG
[ENA]
¡û
>W1810068273
PDZJ01000003
Betaproteobacteria
Janthinobacterium sp. BJB301 [PDZJ]
506869
506945
+
Pro
CGG
[ENA]
¡û
>W1810068354
PDZK01000003
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
529448
529524
+
Pro
CGG
[ENA]
¡û
>W1810068423
PDZL01000012
Betaproteobacteria
Janthinobacterium sp. BJB426 [PDZL]
77862
77786
-
Pro
CGG
[ENA]
¡û
>W1810068476
PDZM01000002
Betaproteobacteria
Janthinobacterium sp. BJB312 [PDZM]
79236
79160
-
Pro
CGG
[ENA]
¡û
>W1810068574
PDZN01000013
Betaproteobacteria
Janthinobacterium sp. BJB304 [PDZN]
129837
129913
+
Pro
CGG
[ENA]
¡û
>W1810068635
PDZO02000004
Betaproteobacteria
Janthinobacterium sp. BJB1 [PDZO]
323049
323125
+
Pro
CGG
[ENA]
¡û
>W1810068707
PDZP01000003
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
374851
374775
-
Pro
CGG
[ENA]
¡û
>W1810071268
PEEQ01000001
Betaproteobacteria
Janthinobacterium sp. 13 [PEEQ]
1971406
1971482
+
Pro
CGG
[ENA]
¡û
>W1810072761
PEFN01000001
Betaproteobacteria
Janthinobacterium sp. 35 [PEFN]
1511418
1511494
+
Pro
CGG
[ENA]
¡û
>W1810089408
PGES01000001
Betaproteobacteria
Janthinobacterium sp. 67 [PGES]
5235795
5235719
-
Pro
CGG
[ENA]
¡û
>W1810121300
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
4858532
4858456
-
Pro
CGG
[ENA]
¡û
>W1810172820
PJMQ01000001
Betaproteobacteria
Janthinobacterium sp. 61 [PJMQ]
5453457
5453383
-
Pro
CGG
[ENA]
¡û
>W1810387760
PXWF02000346
Betaproteobacteria
Massilia glaciei B448-2 [PXWF]
55872
55796
-
Pro
CGG
[ENA]
¡û
>W1810576828
QENT01000001
Betaproteobacteria
Janthinobacterium sp. 78 [QENT]
1452305
1452229
-
Pro
CGG
[ENA]
¡û
>W1810908094
QVIL01000003
Betaproteobacteria
Duganella sp. BJB489 [QVIL]
424207
424131
-
Pro
CGG
[ENA]
¡û
>W1810908160
QVIM01000003
Betaproteobacteria
Duganella sp. BJB488 [QVIM]
231204
231280
+
Pro
CGG
[ENA]
¡û
>W1810908248
QVIN01000005
Betaproteobacteria
Duganella sp. BJB480 [QVIN]
424207
424131
-
Pro
CGG
[ENA]
¡û
>W1810908340
QVIO01000010
Betaproteobacteria
Duganella sp. BJB476 [QVIO]
156991
157067
+
Pro
CGG
[ENA]
¡û
>W1810908410
QVIP01000012
Betaproteobacteria
Duganella sp. BJB475 [QVIP]
55447
55371
-
Pro
CGG
[ENA]
¡û
>C151100162
HG322949
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [HG322949]
4729352
4729428
+
Pro
CGG
[Ensembl]
¡û
>W1510019340
BBWF01000078
Betaproteobacteria
Sulfuricella sp. T08 [BBWF]
40234
40158
-
Pro
CGG
[ENA]
¡û
>W1511355689
JRRH01000016
Betaproteobacteria
Janthinobacterium lividum MTR [JRRH]
34729
34653
-
Pro
CGG
[ENA]
¡û
>W1511588788
LBCO01000033
Betaproteobacteria
Janthinobacterium sp. KBS0711 [LBCO]
987015
987091
+
Pro
CGG
[ENA]
¡û
>W121124623
BAFJ01000002
Betaproteobacteria
Sulfuricella denitrificans skB26 [BAFJ]
21907
21831
-
Pro
CGG
[ENA]
¡û
>W1610070507
BCTH01000103
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
16271
16195
-
Pro
CGG
[ENA]
¡û
>W1610751298
LNCE01000027
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
35128
35052
-
Pro
CGG
[ENA]
¡û
>W1610781659
LOCQ01000050
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
111020
111096
+
Pro
CGG
[ENA]
¡û
>W1710067880
BCTH01000103
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
16271
16195
-
Pro
CGG
[ENA]
¡û
>W1710509347
FMXD01000003
Betaproteobacteria
Janthinobacterium sp. 551a [FMXD]
88817
88741
-
Pro
CGG
[ENA]
¡û
>W1710517068
FNDA01000005
Betaproteobacteria
Janthinobacterium sp. YR213 [FNDA]
517570
517646
+
Pro
CGG
[ENA]
¡û
>W1710522219
FNHA01000010
Betaproteobacteria
Janthinobacterium sp. OK676 [FNHA]
79720
79644
-
Pro
CGG
[ENA]
¡û
>W1710547578
FODC01000002
Betaproteobacteria
Duganella sp. CF517 [FODC]
522692
522768
+
Pro
CGG
[ENA]
¡û
>W1710556740
FOKL01000002
Betaproteobacteria
Janthinobacterium sp. 344 [FOKL]
687057
687133
+
Pro
CGG
[ENA]
¡û
>W1710568803
FOTW01000010
Betaproteobacteria
Rugamonas rubra [FOTW]
252900
252976
+
Pro
CGG
[ENA]
¡û
>W1710581701
FPKH01000002
Betaproteobacteria
Janthinobacterium lividum [FPKH]
85741
85665
-
Pro
CGG
[ENA]
¡û
>W1710586002
FQWU01000002
Betaproteobacteria
Massilia sp. CF038 [FQWU]
1538279
1538355
+
Pro
CGG
[ENA]
¡û
>W1710596868
FTMV01000010
Betaproteobacteria
Janthinobacterium sp. TND4EL3 [FTMV]
89737
89661
-
Pro
CGG
[ENA]
¡û
>W1710720663
LFKP01000011
Betaproteobacteria
Janthinobacterium lividum [LFKP]
520603
520679
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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