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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180123 (73 seq.)
>W1711224651
LXUF01000001
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
1442318
1442402
+
Leu
CAG
[ENA]
¡û
>C014768
AL954747
Betaproteobacteria
Nitrosomonas europaea ATCC 19718 [AL954747]
392236
392152
-
Leu
CAG
[Ensembl]
¡û
>C014784
CP000450
Betaproteobacteria
Nitrosomonas eutropha C91 [CP000450]
1702900
1702984
+
Leu
CAG
[Ensembl]
¡û
>WENV180285727
OBID01654794
[OBID] metagenome; sludge
49
133
+
Leu
CAG
[ENA]
¢þ
>WENV180296757
OBJA01002376
[OBJA] soil metagenome; sediment, water from around vicinity
1084
1000
-
Leu
CAG
[ENA]
¢þ
>w002432
AABB02000001
Betaproteobacteria
Nitrosomonas europaea [AABB]
392238
392152
-
Leu
CAG
[ENA]
¡û
>WENV181173159
OEIV011246049
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
108
192
+
Leu
CAG
[ENA]
¢þ
>WENV181188450
OEOE01136347
[OEOE] activated sludge metagenome; Activated Sludge
225
141
-
Leu
CAG
[ENA]
¢þ
>WENV170556437
CXWL01008643
[CXWL] groundwater metagenome; biofilm material
1124
1040
-
Leu
CAG
[ENA]
¢þ
>WENV170557576
CXWL01030839
[CXWL] groundwater metagenome; biofilm material
3716
3800
+
Leu
CAG
[ENA]
¢þ
>WENV170557577
CXWL01030840
[CXWL] groundwater metagenome; biofilm material
14632
14716
+
Leu
CAG
[ENA]
¢þ
>WENV170576486
FRDC01000712
[FRDC] freshwater metagenome; water
21365
21449
+
Leu
CAG
[ENA]
¢þ
>WENV170577811
FSSH01001504
[FSSH] freshwater metagenome; drinking water
56314
56230
-
Leu
CAG
[ENA]
¢þ
>WENV170653268
JRYI01040235
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
2258
2174
-
Leu
CAG
[ENA]
¢þ
>WENV170712449
LNFM01013453
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5258
5342
+
Leu
CAG
[ENA]
¢þ
>WENV170713540
LNFM01034173
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1369
1285
-
Leu
CAG
[ENA]
¢þ
>WENV170714804
LNFM01103425
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1078
1162
+
Leu
CAG
[ENA]
¢þ
>W141565147
JIBI01000004
Betaproteobacteria
Nitrosomonas cryotolerans ATCC 49181 [JIBI]
78649
78733
+
Leu
CAG
[ENA]
¡û
>W09103388
AAJE01000005
Betaproteobacteria
Nitrosomonas eutropha C71 [AAJE]
76667
76751
+
Leu
CAG
[ENA]
¡û
>W09133567
ACPG01000006
Betaproteobacteria
Nitrosomonas sp. AL212 [ACPG]
48290
48374
+
Leu
CAG
[ENA]
¡û
>W1910226483
FMWO01000021
Betaproteobacteria
Nitrosomonas mobilis [FMWO]
4952
4868
-
Leu
CAG
[ENA]
¡û
>W1910338838
FSRO01000001
Betaproteobacteria
Nitrosomonas cryotolerans ATCC 49181 [FSRO]
2625383
2625299
-
Leu
CAG
[ENA]
¡û
>C09107571
CP001674
Betaproteobacteria
Methylovorus glucosotrophus SIP3-4 [CP001674]
1824522
1824606
+
Leu
CAG
[Ensembl]
¡û
>W1910730017
MHBT01000127
Betaproteobacteria
Methylophilales bacterium RIFCSPHIGHO2_02_FULL_57_10 [MHBT]
380
296
-
Leu
CAG
[ENA]
¡û
>W1911496614
OCMU01000002
Betaproteobacteria
Nitrosomonas ureae Nm42 [OCMU]
256024
255940
-
Leu
CAG
[ENA]
¡û
>W1810068028
PDZG01000009
Betaproteobacteria
Iodobacter sp. BJB302 [PDZG]
15832
15916
+
Leu
CAG
[ENA]
¡û
>W1810068029
PDZG01000009
Betaproteobacteria
Iodobacter sp. BJB302 [PDZG]
15987
16071
+
Leu
CAG
[ENA]
¡û
>W1810068030
PDZG01000009
Betaproteobacteria
Iodobacter sp. BJB302 [PDZG]
16142
16226
+
Leu
CAG
[ENA]
¡û
>W1810389532
PXXU01000005
Betaproteobacteria
Nitrosomonas supralitoralis APG5 [PXXU]
91402
91486
+
Leu
CAG
[ENA]
¡û
>W1810463542
PZZQ01000002
Betaproteobacteria
Nitrosomonas eutropha Nm19 [PZZQ]
12541
12457
-
Leu
CAG
[ENA]
¡û
>W1810463656
PZZS01000018
Betaproteobacteria
Nitrosomonas nitrosa Nm91 [PZZS]
31840
31756
-
Leu
CAG
[ENA]
¡û
>W1810463679
PZZT01000010
Betaproteobacteria
Nitrosomonas sp. Nm141 [PZZT]
60856
60772
-
Leu
CAG
[ENA]
¡û
>W1810464192
QAAE01000017
Betaproteobacteria
Nitrosomonas aestuarii Nm36 [QAAE]
13187
13103
-
Leu
CAG
[ENA]
¡û
>W1810476848
QAOI01000008
Betaproteobacteria
Nitrosomonas oligotropha Nm49 [QAOI]
94564
94480
-
Leu
CAG
[ENA]
¡û
>W1810476991
QAOL01000019
Betaproteobacteria
Nitrosomonas ureae Nm4 [QAOL]
16130
16214
+
Leu
CAG
[ENA]
¡û
>W1810477110
QAOO01000004
Betaproteobacteria
Nitrosomonas nitrosa Nm90 [QAOO]
160533
160449
-
Leu
CAG
[ENA]
¡û
>W1810628636
QICQ01000004
Betaproteobacteria
Nitrosomonas eutropha Nm 57 [QICQ]
5709
5625
-
Leu
CAG
[ENA]
¡û
>W1810658834
QJJP01000004
Betaproteobacteria
Nitrosomonas sp. Nm84 [QJJP]
48861
48777
-
Leu
CAG
[ENA]
¡û
>W1810659200
QJJW01000014
Betaproteobacteria
Nitrosomonas ureae Nm5 [QJJW]
37792
37708
-
Leu
CAG
[ENA]
¡û
>W1810696315
QLTE01000030
Betaproteobacteria
Nitrosomonas sp. Nm143 [QLTE]
15069
14985
-
Leu
CAG
[ENA]
¡û
>C151082860
CP011451
Betaproteobacteria
Nitrosomonas communis Nm2 [CP011451]
3678879
3678963
+
Leu
CAG
[Ensembl]
¡û
>C11114205
CP002252
Betaproteobacteria
Methylovorus sp. MP688 [CP002252]
1769539
1769623
+
Leu
CAG
[Ensembl]
¡û
>C11115620
CP002552
Betaproteobacteria
Nitrosomonas sp. AL212 [CP002552]
1274524
1274608
+
Leu
CAG
[Ensembl]
¡û
>C11115674
CP002876
Betaproteobacteria
Nitrosomonas sp. Is79A3 [CP002876]
2783163
2783079
-
Leu
CAG
[Ensembl]
¡û
>W1511552196
JZUG01000006
Betaproteobacteria
Janthinobacterium sp. B9-8 [JZUG]
195814
195730
-
Leu
CAG
[ENA]
¡û
>C161055578
CP013341
Betaproteobacteria
Nitrosomonas ureae Nm10 [CP013341]
2994179
2994095
-
Leu
CAG
[Ensembl]
¡û
>C161068590
CP014222
Betaproteobacteria
Janthinobacterium sp. B9-8 [CP014222]
1094177
1094093
-
Leu
CAG
[Ensembl]
¡û
>W1610574699
JZQZ01000223
Betaproteobacteria
Nitrosomonas europaea [JZQZ]
1042
958
-
Leu
CAG
[ENA]
¡û
>W1611008615
LXUF01000001
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
1442318
1442402
+
Leu
CAG
[ENA]
¡û
>W1710505674
FMTW01000001
Betaproteobacteria
Nitrosomonas eutropha [FMTW]
12541
12457
-
Leu
CAG
[ENA]
¡û
>W1710517426
FNDH01000086
Betaproteobacteria
Nitrosomonas sp. Nm132 [FNDH]
3425
3509
+
Leu
CAG
[ENA]
¡û
>W1710527963
FNLN01000052
Betaproteobacteria
Nitrosomonas ureae [FNLN]
12393
12477
+
Leu
CAG
[ENA]
¡û
>W1710528545
FNNH01000029
Betaproteobacteria
Nitrosomonas communis [FNNH]
24198
24282
+
Leu
CAG
[ENA]
¡û
>W1710528771
FNNM01000004
Betaproteobacteria
Nitrosomonas eutropha [FNNM]
920
836
-
Leu
CAG
[ENA]
¡û
>W1710529363
FNNX01000010
Betaproteobacteria
Nitrosomonas europaea [FNNX]
10755
10671
-
Leu
CAG
[ENA]
¡û
>W1710529719
FNOE01000022
Betaproteobacteria
Nitrosomonas oligotropha [FNOE]
39316
39400
+
Leu
CAG
[ENA]
¡û
>W1710530706
FNOY01000057
Betaproteobacteria
Nitrosomonas halophila [FNOY]
12206
12122
-
Leu
CAG
[ENA]
¡û
>W1710531189
FNPJ01000012
Betaproteobacteria
Nitrosomonas sp. Nm33 [FNPJ]
16021
15937
-
Leu
CAG
[ENA]
¡û
>W1710531594
FNPQ01000069
Betaproteobacteria
Nitrosomonas sp. Nm58 [FNPQ]
7299
7383
+
Leu
CAG
[ENA]
¡û
>W1710538914
FNUX01000023
Betaproteobacteria
Nitrosomonas ureae [FNUX]
43829
43913
+
Leu
CAG
[ENA]
¡û
>W1710541311
FNYF01000046
Betaproteobacteria
Nitrosomonas eutropha [FNYF]
5707
5623
-
Leu
CAG
[ENA]
¡û
>W1710548200
FODO01000021
Betaproteobacteria
Nitrosomonas oligotropha [FODO]
39354
39438
+
Leu
CAG
[ENA]
¡û
>W1710551228
FOFX01000022
Betaproteobacteria
Nitrosomonas ureae [FOFX]
42117
42201
+
Leu
CAG
[ENA]
¡û
>W1710554039
FOID01000010
Betaproteobacteria
Nitrosomonas europaea [FOID]
10755
10671
-
Leu
CAG
[ENA]
¡û
>W1710560174
FONE01000025
Betaproteobacteria
Nitrosomonas sp. Nm166 [FONE]
8331
8247
-
Leu
CAG
[ENA]
¡û
>W1710565326
FORD01000081
Betaproteobacteria
Nitrosomonas sp. Nm34 [FORD]
4828
4912
+
Leu
CAG
[ENA]
¡û
>W1710567261
FOSP01000010
Betaproteobacteria
Nitrosomonas aestuarii [FOSP]
83198
83282
+
Leu
CAG
[ENA]
¡û
>W1710569044
FOUB01000024
Betaproteobacteria
Nitrosomonas communis [FOUB]
17946
17862
-
Leu
CAG
[ENA]
¡û
>W1710569219
FOUF01000016
Betaproteobacteria
Nitrosomonas nitrosa [FOUF]
17618
17702
+
Leu
CAG
[ENA]
¡û
>W1710573490
FOXN01000004
Betaproteobacteria
Nitrosomonas cryotolerans [FOXN]
39033
38949
-
Leu
CAG
[ENA]
¡û
>W1710578260
FPBL01000003
Betaproteobacteria
Nitrosomonas eutropha [FPBL]
30249
30333
+
Leu
CAG
[ENA]
¡û
>W1710600400
FUWK01000009
Betaproteobacteria
Nitrosomonas europaea [FUWK]
10817
10733
-
Leu
CAG
[ENA]
¡û
>W1710691934
JZQZ01000223
Betaproteobacteria
Nitrosomonas europaea [JZQZ]
1042
958
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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