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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180132 (14 seq.)
>W1711173926
LWDS01000010
Bacteroidota
Elizabethkingia anophelis [LWDS]
958604
958530
-
Arg
ACG
[ENA]
¡û
>W1711300937
MAHK01000018
Bacteroidota
Elizabethkingia miricola [MAHK]
15531
15457
-
Arg
ACG
[ENA]
¡û
>W1711301056
MAHN01000038
Bacteroidota
Elizabethkingia anophelis R26 [MAHN]
24136
24062
-
Arg
ACG
[ENA]
¡û
>W131061579
ANIW01000063
Bacteroidota
Elizabethkingia anophelis R26 [ANIW]
5813
5739
-
Arg
ACG
[ENA]
¡û
>C181080605
CP023401
Bacteroidota
Elizabethkingia anophelis R26 [CP023401]
1055100
1055174
+
Arg
ACG
-
¡û
>C181080657
CP023402
Bacteroidota
Elizabethkingia anophelis Ag1 [CP023402]
1055093
1055167
+
Arg
ACG
-
¡û
>C181080709
CP023403
Bacteroidota
Elizabethkingia anophelis AR6-8 [CP023403]
1055093
1055167
+
Arg
ACG
-
¡û
>C181080761
CP023404
Bacteroidota
Elizabethkingia anophelis AR4-6 [CP023404]
1055093
1055167
+
Arg
ACG
-
¡û
>W1910912962
NHPR01000005
Bacteroidota
Elizabethkingia miricola FL160902 [NHPR]
16059
15985
-
Arg
ACG
[ENA]
¡û
>W1810392660
PYAO01000005
Bacteroidota
Elizabethkingia miricola QZY.EM [PYAO]
15143
15069
-
Arg
ACG
[ENA]
¡û
>W1511683343
LFKT01000011
Bacteroidota
Elizabethkingia anophelis As1 [LFKT]
24734
24660
-
Arg
ACG
[ENA]
¡û
>W121032035
AHHG01000030
Bacteroidota
Elizabethkingia anophelis Ag1 [AHHG]
12558
12484
-
Arg
ACG
[ENA]
¡û
>W1610507354
FLST01000029
Bacteroidota
Elizabethkingia anophelis [FLST]
24967
24893
-
Arg
ACG
[ENA]
¡û
>W1710499572
FLST01000029
Bacteroidota
Elizabethkingia anophelis [FLST]
24967
24893
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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