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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180133 (56 seq.)
>W1710937119
LOLZ01000091
Gammaproteobacteria
Legionella pneumophila [LOLZ]
18392
18476
+
Leu
GAG
[ENA]
¡û
>W1710937170
LOMA01000049
Gammaproteobacteria
Legionella pneumophila [LOMA]
39229
39145
-
Leu
GAG
[ENA]
¡û
>W1710945221
LORH01000030
Gammaproteobacteria
Legionella pneumophila [LORH]
38843
38759
-
Leu
GAG
[ENA]
¡û
>C171063113
CP017457
Gammaproteobacteria
Legionella pneumophila subsp. fraseri Detroit-1 [CP017457]
3264228
3264144
-
Leu
GAG
-
¡û
>C171063156
CP017458
Gammaproteobacteria
Legionella pneumophila subsp. fraseri Dallas 1E [CP017458]
3240667
3240583
-
Leu
GAG
-
¡û
>W141462990
JFIG01000012
Gammaproteobacteria
Legionella pneumophila subsp. fraseri [JFIG]
68252
68336
+
Leu
GAG
[ENA]
¡û
>W141463128
JFIJ01000014
Gammaproteobacteria
Legionella pneumophila subsp. pascullei [JFIJ]
38797
38713
-
Leu
GAG
[ENA]
¡û
>W141463165
JFIK01000007
Gammaproteobacteria
Legionella pneumophila subsp. fraseri [JFIK]
77372
77456
+
Leu
GAG
[ENA]
¡û
>W141463233
JFIM01000005
Gammaproteobacteria
Legionella pneumophila subsp. fraseri [JFIM]
68285
68369
+
Leu
GAG
[ENA]
¡û
>C181001656
AP017372
Gammaproteobacteria
Halorhodospira halochloris DSM 1059 [AP017372]
1146666
1146750
+
Leu
GAG
-
¡û
>C181026263
CP017601
Gammaproteobacteria
Legionella pneumophila D6026 [CP017601]
3207794
3207710
-
Leu
GAG
-
¡û
>C181026306
CP017602
Gammaproteobacteria
Legionella pneumophila D5945 [CP017602]
3209454
3209370
-
Leu
GAG
-
¡û
>C181050194
CP021256
Gammaproteobacteria
Legionella pneumophila D-4954 [CP021256]
3388394
3388310
-
Leu
GAG
-
¡û
>C181050241
CP021257
Gammaproteobacteria
Legionella pneumophila subsp. fraseri Lansing 3 [CP021257]
3358349
3358265
-
Leu
GAG
-
¡û
>C181050280
CP021258
Gammaproteobacteria
Legionella pneumophila subsp. fraseri D-5744 [CP021258]
3235906
3235822
-
Leu
GAG
-
¡û
>C181050323
CP021259
Gammaproteobacteria
Legionella pneumophila D-7708 [CP021259]
3159905
3159821
-
Leu
GAG
-
¡û
>C181050366
CP021260
Gammaproteobacteria
Legionella pneumophila [CP021260]
3308038
3307954
-
Leu
GAG
-
¡û
>C181050409
CP021261
Gammaproteobacteria
Legionella pneumophila [CP021261]
3272816
3272732
-
Leu
GAG
-
¡û
>C181050452
CP021262
Gammaproteobacteria
Legionella pneumophila subsp. pascullei [CP021262]
3203769
3203685
-
Leu
GAG
-
¡û
>C181050495
CP021263
Gammaproteobacteria
Legionella pneumophila subsp. fraseri D-3137 [CP021263]
3227563
3227479
-
Leu
GAG
-
¡û
>C181050538
CP021264
Gammaproteobacteria
Legionella pneumophila subsp. fraseri D-5387 [CP021264]
3220633
3220549
-
Leu
GAG
-
¡û
>C181050581
CP021265
Gammaproteobacteria
Legionella pneumophila subsp. fraseri [CP021265]
3300239
3300155
-
Leu
GAG
-
¡û
>C181050796
CP021270
Gammaproteobacteria
Legionella pneumophila D-7787 [CP021270]
3101500
3101416
-
Leu
GAG
-
¡û
>C181050839
CP021272
Gammaproteobacteria
Legionella pneumophila D-5265 [CP021272]
3236785
3236701
-
Leu
GAG
-
¡û
>C181050882
CP021274
Gammaproteobacteria
Legionella pneumophila D-4040 [CP021274]
3242032
3241948
-
Leu
GAG
-
¡û
>C181050932
CP021277
Gammaproteobacteria
Legionella pneumophila subsp. fraseri D-4058 [CP021277]
3286317
3286233
-
Leu
GAG
-
¡û
>C181050968
CP021279
Gammaproteobacteria
Legionella pneumophila subsp. fraseri F-4198 [CP021279]
3210379
3210295
-
Leu
GAG
-
¡û
>C181211747
LS483412
Gammaproteobacteria
Legionella pneumophila subsp. pascullei NCTC12272 [LS483412]
3203765
3203681
-
Leu
GAG
-
¡û
>C191209674
LR134380
Gammaproteobacteria
Legionella pneumophila subsp. pascullei NCTC12273 [LR134380]
3203768
3203684
-
Leu
GAG
-
¡û
>W1911667137
QFKT01000003
Gammaproteobacteria
Legionella pneumophila C1 [QFKT]
38904
38820
-
Leu
GAG
[ENA]
¡û
>W1810268086
PQWY01000021
Gammaproteobacteria
Legionella pneumophila LG61 [PQWY]
38872
38788
-
Leu
GAG
[ENA]
¡û
>C161069520
CP014255
Gammaproteobacteria
Legionella pneumophila subsp. pascullei F-4185 [CP014255]
3129983
3129899
-
Leu
GAG
-
¡û
>C161069551
CP014256
Gammaproteobacteria
Legionella pneumophila subsp. pascullei D-7158 [CP014256]
3203769
3203685
-
Leu
GAG
-
¡û
>C161069594
CP014257
Gammaproteobacteria
Legionella pneumophila subsp. pascullei D-7119 [CP014257]
3121488
3121404
-
Leu
GAG
[Ensembl]
¡û
>W1610420580
FJAK01000012
Gammaproteobacteria
Legionella pneumophila [FJAK]
80162
80246
+
Leu
GAG
[ENA]
¡û
>W1610421015
FJAV01000004
Gammaproteobacteria
Legionella pneumophila [FJAV]
223706
223622
-
Leu
GAG
[ENA]
¡û
>W1610577073
LAVQ01000006
Gammaproteobacteria
Legionella pneumophila [LAVQ]
186138
186222
+
Leu
GAG
[ENA]
¡û
>W1610578728
LAXW01000009
Gammaproteobacteria
Legionella pneumophila [LAXW]
175373
175457
+
Leu
GAG
[ENA]
¡û
>W1610579387
LBAF01000004
Gammaproteobacteria
Legionella pneumophila [LBAF]
185817
185901
+
Leu
GAG
[ENA]
¡û
>W1610579934
LBAS01000005
Gammaproteobacteria
Legionella pneumophila [LBAS]
43900
43816
-
Leu
GAG
[ENA]
¡û
>W1610583993
LBHM01000010
Gammaproteobacteria
Legionella pneumophila [LBHM]
77516
77600
+
Leu
GAG
[ENA]
¡û
>W1610585105
LCUP01000050
Gammaproteobacteria
Legionella pneumophila [LCUP]
175463
175547
+
Leu
GAG
[ENA]
¡û
>W1610585118
LCUQ01000012
Gammaproteobacteria
Legionella pneumophila [LCUQ]
68373
68457
+
Leu
GAG
[ENA]
¡û
>W1610793294
LOLZ01000091
Gammaproteobacteria
Legionella pneumophila [LOLZ]
18392
18476
+
Leu
GAG
[ENA]
¡û
>W1610793345
LOMA01000049
Gammaproteobacteria
Legionella pneumophila [LOMA]
39229
39145
-
Leu
GAG
[ENA]
¡û
>W1610801180
LORH01000030
Gammaproteobacteria
Legionella pneumophila [LORH]
38843
38759
-
Leu
GAG
[ENA]
¡û
>ENV000068
AB260935
Environmental sample from ENV division of INSDC
14621
14705
+
Leu
GAG
[ENA]
>W1710420316
FJAK01000012
Gammaproteobacteria
Legionella pneumophila [FJAK]
80162
80246
+
Leu
GAG
[ENA]
¡û
>W1710420751
FJAV01000004
Gammaproteobacteria
Legionella pneumophila [FJAV]
223706
223622
-
Leu
GAG
[ENA]
¡û
>W1710695562
LAVQ01000006
Gammaproteobacteria
Legionella pneumophila [LAVQ]
186138
186222
+
Leu
GAG
[ENA]
¡û
>W1710697559
LAXW01000009
Gammaproteobacteria
Legionella pneumophila [LAXW]
175373
175457
+
Leu
GAG
[ENA]
¡û
>W1710698399
LBAF01000004
Gammaproteobacteria
Legionella pneumophila [LBAF]
185817
185901
+
Leu
GAG
[ENA]
¡û
>W1710698946
LBAS01000005
Gammaproteobacteria
Legionella pneumophila [LBAS]
43900
43816
-
Leu
GAG
[ENA]
¡û
>W1710703141
LBHM01000010
Gammaproteobacteria
Legionella pneumophila [LBHM]
77516
77600
+
Leu
GAG
[ENA]
¡û
>W1710704296
LCUP01000050
Gammaproteobacteria
Legionella pneumophila [LCUP]
175463
175547
+
Leu
GAG
[ENA]
¡û
>W1710704309
LCUQ01000012
Gammaproteobacteria
Legionella pneumophila [LCUQ]
68373
68457
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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