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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180176 (61 seq.)
>W1711385393
MEED01000054
Betaproteobacteria
Lautropia sp. SCN 69-89 [MEED]
4968
4892
-
Met
CAT
[ENA]
¡û
>W1711386301
MEFD01000034
Betaproteobacteria
Rubrivivax sp. SCN 71-131 [MEFD]
17919
17995
+
Met
CAT
[ENA]
¡û
>W1711387273
MEGM01000017
Betaproteobacteria
Rubrivivax sp. SCN 70-15 [MEGM]
30931
30855
-
Met
CAT
[ENA]
¡û
>W1711504516
MKUQ01000016
Betaproteobacteria
Burkholderiales bacterium 70-64 [MKUQ]
194588
194664
+
Met
CAT
[ENA]
¡û
>W131202923
ASXI01000096
Betaproteobacteria
Paraburkholderia phenoliruptrix AC1100 [ASXI]
60500
60424
-
Met
CAT
[ENA]
¡û
>W131174763
ARIS01000068
Betaproteobacteria
Thiomonas sp. FB-6 [ARIS]
42615
42691
+
Met
CAT
[ENA]
¡û
>w019577
AAUH01000010
Betaproteobacteria
Paraburkholderia phytofirmans PsJN [AAUH]
52469
52396
-
Met
CAT
[ENA]
¡û
>WENV180247955
OBEQ010072326
[OBEQ] groundwater metagenome; groundwater
752
828
+
Met
CAT
[ENA]
¢þ
>WENV180250940
OBEQ010327116
[OBEQ] groundwater metagenome; groundwater
137
61
-
Met
CAT
[ENA]
¢þ
>WENV180268844
OBEQ012008675
[OBEQ] groundwater metagenome; groundwater
5
81
+
Met
CAT
[ENA]
¢þ
>WENV180355049
OBNG01000928
[OBNG] sediment metagenome; sediment
2436
2512
+
Met
CAT
[ENA]
¢þ
>WENV180355459
OBNI01000018
[OBNI] sediment metagenome; sediment
164144
164068
-
Met
CAT
[ENA]
¢þ
>WENV180355792
OBNJ01000441
[OBNJ] sediment metagenome; sediment
4694
4618
-
Met
CAT
[ENA]
¢þ
>WENV180635422
OCRD01028515
[OCRD] marine metagenome; seawater
142
218
+
Met
CAT
[ENA]
¢þ
>WENV181166920
OEIU01004159
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
524
600
+
Met
CAT
[ENA]
¢þ
>WENV181167832
OEIU01084258
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
803
879
+
Met
CAT
[ENA]
¢þ
>WENV181172834
OEIV011013740
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
8
84
+
Met
CAT
[ENA]
¢þ
>W141267680
CCNS01000137
Betaproteobacteria
Caballeronia glathei [CCNS]
55467
55543
+
Met
CAT
[ENA]
¡û
>WENV170302285
CESH01129033
[CESH] marine metagenome genome assembly TARA_094_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2028
2104
+
Met
CAT
[ENA]
¢þ
>WENV170652428
JRYH01003041
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
316
392
+
Met
CAT
[ENA]
¢þ
>WENV170652662
JRYH01012357
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
7054
7130
+
Met
CAT
[ENA]
¢þ
>WENV170961831
MLJW01002172
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
2622
2546
-
Met
CAT
[ENA]
¢þ
>C181109005
CP024934
Betaproteobacteria
Paraburkholderia graminis PHS1 [CP024934, CP024935]
3347451
3347527
+
Met
CAT
-
¡û
>C181109136
CP024941
Betaproteobacteria
Paraburkholderia terricola mHS1 [CP024941, CP024942]
3374780
3374856
+
Met
CAT
-
¡û
>C181169393
CP028901
Betaproteobacteria
Orrella marina HZ20 [CP028901]
449342
449418
+
Met
CAT
-
¡û
>C191018775
CP021250
Betaproteobacteria
Bordetella sp. J329 [CP021250]
1434566
1434490
-
Met
CAT
-
¡û
>C191072710
CP030849
Betaproteobacteria
Pandoraea sp. XY-2 [CP030849]
4285671
4285747
+
Met
CAT
-
¡û
>C191116604
CP033936
Betaproteobacteria
Kerstersia gyiorum SWMUKG01 [CP033936]
1517769
1517693
-
Met
CAT
-
¡û
>W1910207442
FLMQ01000045
Betaproteobacteria
Thiomonas delicata DSM 16361 [FLMQ]
464187
464263
+
Met
CAT
[ENA]
¡û
>W1910211074
FMBP01000004
Betaproteobacteria
Thiomonas sp. X19 [FMBP]
100892
100968
+
Met
CAT
[ENA]
¡û
>W1910664510
MCAS01000069
Betaproteobacteria
Paraburkholderia fungorum ES3-20 [MCAS]
147332
147408
+
Met
CAT
[ENA]
¡û
>W1910822064
MWMK01000034
Betaproteobacteria
Paraburkholderia strydomiana WK1.1f [MWMK]
9349
9273
-
Met
CAT
[ENA]
¡û
>W1911244709
NSJB01000001
Betaproteobacteria
Vandammella animalimorsus NML00-0135 [NSJB]
94194
94270
+
Met
CAT
[ENA]
¡û
>W1911244755
NSJC01000001
Betaproteobacteria
Vandammella animalimorsus NML97-0112 [NSJC]
7518
7594
+
Met
CAT
[ENA]
¡û
>W1911244842
NSJD01000042
Betaproteobacteria
Vandammella animalimorsus NML79-0751 [NSJD]
7887
7963
+
Met
CAT
[ENA]
¡û
>W1911244848
NSJE01000001
Betaproteobacteria
Vandammella animalimorsus NML120219 [NSJE]
147276
147200
-
Met
CAT
[ENA]
¡û
>W1911244899
NSJF01000001
Betaproteobacteria
Vandammella animalimorsus NML03-0146 [NSJF]
262406
262482
+
Met
CAT
[ENA]
¡û
>W1911270455
NTBH01000001
Betaproteobacteria
Vandammella animalimorsus NML91-0036 [NTBH]
738590
738514
-
Met
CAT
[ENA]
¡û
>W1911270500
NTBI01000001
Betaproteobacteria
Vandammella animalimorsus NML91-0035 [NTBI]
392661
392585
-
Met
CAT
[ENA]
¡û
>SRA1002320
SRR001308.373101
Metagenomic characterization of a wastewater treatment plant (SRP000180)
183
261
+
Met
CAT
[SRA]
>W1810356687
PVNC01000009
Betaproteobacteria
Paraburkholderia sp. BL18I3N2 [PVNC]
198833
198757
-
Met
CAT
[ENA]
¡û
>W1810682279
QKTZ01000006
Betaproteobacteria
Paraburkholderia sp. PDC91 [QKTZ]
154808
154732
-
Met
CAT
[ENA]
¡û
>W1810788431
QREJ01000001
Betaproteobacteria
Paraburkholderia sp. BL27I4N3 [QREJ]
273226
273150
-
Met
CAT
[ENA]
¡û
>C151004818
CP003863
Betaproteobacteria
Paraburkholderia phenoliruptrix BR3459a [CP003863, CP003864]
3478811
3478887
+
Met
CAT
[Ensembl]
¡û
>C151036842
CP008760
Betaproteobacteria
Paraburkholderia xenovorans LB400 [CP008760, CP008761, CP008762]
3096114
3096038
-
Met
CAT
[Ensembl]
¡û
>C151070673
CP010536
Betaproteobacteria
Cupriavidus basilensis 4G11 [CP010536, CP010537]
676245
676169
-
Met
CAT
[Ensembl]
¡û
>C11104361
CP002217
Betaproteobacteria
Burkholderia sp. CCGE1003 [CP002217]
3371537
3371613
+
Met
CAT
[Ensembl]
¡û
>W1511483814
JWMB01000018
Betaproteobacteria
Cupriavidus sp. SHE [JWMB]
205669
205745
+
Met
CAT
[ENA]
¡û
>W1511595697
LBNE01000002
Betaproteobacteria
Kerstersia gyiorum CG1 [LBNE]
325930
326006
+
Met
CAT
[ENA]
¡û
>W1511595996
LBNQ01000009
Betaproteobacteria
Lampropedia cohaerens CT6 [LBNQ]
129292
129368
+
Met
CAT
[ENA]
¡û
>W121033590
AHJE01000027
Betaproteobacteria
Cupriavidus basilensis OR16 [AHJE]
49727
49651
-
Met
CAT
[ENA]
¡û
>W1610077552
BCZO01000001
Betaproteobacteria
Cupriavidus metallidurans NBRC 101272 [BCZO]
1041869
1041945
+
Met
CAT
[ENA]
¡û
>W1610206725
FCOJ02000002
Betaproteobacteria
Caballeronia glebae LMG 29325 [FCOJ]
195399
195323
-
Met
CAT
[ENA]
¡û
>W1610614696
LGIO01000002
Betaproteobacteria
Burkholderia sp. ST111 [LGIO]
129290
129366
+
Met
CAT
[ENA]
¡û
>W1710075190
BCZO01000001
Betaproteobacteria
Cupriavidus metallidurans NBRC 101272 [BCZO]
1041869
1041945
+
Met
CAT
[ENA]
¡û
>W1710526832
FNKP01000001
Betaproteobacteria
Paraburkholderia fungorum [FNKP]
3290982
3291058
+
Met
CAT
[ENA]
¡û
>W1710534125
FNRQ01000001
Betaproteobacteria
Paraburkholderia sartisoli [FNRQ]
383834
383758
-
Met
CAT
[ENA]
¡û
>W1710578076
FPBH01000010
Betaproteobacteria
Paraburkholderia aspalathi [FPBH]
114850
114774
-
Met
CAT
[ENA]
¡û
>W1710583680
FQUZ01000024
Betaproteobacteria
Lampropedia hyalina DSM 16112 [FQUZ]
49063
49139
+
Met
CAT
[ENA]
¡û
>W1710589327
FRAB01000012
Betaproteobacteria
Paraburkholderia terricola [FRAB]
54087
54163
+
Met
CAT
[ENA]
¡û
>W1710735830
LGIO01000002
Betaproteobacteria
Burkholderia sp. ST111 [LGIO]
129290
129366
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK