This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180232 (101 seq.)
>W1710892579
LNDW01000022
Betaproteobacteria
Betaproteobacteria bacterium Ga0077527 [LNDW]
162004
162080
+
Gln
TTG
[ENA]
¡û
>W1711254515
LYQK01000022
Betaproteobacteria
Achromobacter xylosoxidans [LYQK]
91400
91476
+
Gln
TTG
[ENA]
¡û
>W1711394692
MEQO01000039
Betaproteobacteria
Betaproteobacteria bacterium RBG_16_64_18 [MEQO]
4116
4040
-
Gln
TTG
[ENA]
¡û
>W1711708477
MSTP01000110
Betaproteobacteria
Achromobacter denitrificans xylosoxidans [MSTP]
14799
14723
-
Gln
TTG
[ENA]
¡û
>W1711723126
MTLH01000008
Betaproteobacteria
Achromobacter denitrificans [MTLH]
9501
9577
+
Gln
TTG
[ENA]
¡û
>W1711956571
NBTL01000001
Betaproteobacteria
Achromobacter xylosoxidans [NBTL]
1734848
1734924
+
Gln
TTG
[ENA]
¡û
>W1712110513
NJIG01000035
Betaproteobacteria
Achromobacter marplatensis [NJIG]
4703
4627
-
Gln
TTG
[ENA]
¡û
>C171008845
CP011189
Betaproteobacteria
Bordetella pertussis H729 [CP011189]
3336217
3336141
-
Gln
TTG
-
¡û
>C171009144
CP011195
Betaproteobacteria
Bordetella pertussis H806 [CP011195]
3330219
3330143
-
Gln
TTG
-
¡û
>C171010221
CP011242
Betaproteobacteria
Bordetella pertussis I975 [CP011242]
743343
743419
+
Gln
TTG
-
¡û
>C171011350
CP011695
Betaproteobacteria
Bordetella pertussis H437 [CP011695]
721422
721498
+
Gln
TTG
-
¡û
>C171012050
CP011709
Betaproteobacteria
Bordetella pertussis H864 [CP011709]
742293
742369
+
Gln
TTG
-
¡û
>C171012872
CP011725
Betaproteobacteria
Bordetella pertussis I263 [CP011725]
3420116
3420040
-
Gln
TTG
-
¡û
>C171013300
CP011734
Betaproteobacteria
Bordetella pertussis I375 [CP011734]
724568
724644
+
Gln
TTG
-
¡û
>C171013500
CP011738
Betaproteobacteria
Bordetella pertussis I386 [CP011738]
721421
721497
+
Gln
TTG
-
¡û
>C171015597
CP012081
Betaproteobacteria
Bordetella pertussis I351 [CP012081]
3334387
3334311
-
Gln
TTG
-
¡û
>C171015795
CP012085
Betaproteobacteria
Bordetella pertussis J010 [CP012085]
3337216
3337140
-
Gln
TTG
-
¡û
>C171020704
CP013093
Betaproteobacteria
Bordetella pertussis J194 [CP013093]
3334117
3334041
-
Gln
TTG
-
¡û
>C171028385
CP013884
Betaproteobacteria
Bordetella pertussis J093 [CP013884]
721421
721497
+
Gln
TTG
-
¡û
>C171029159
CP013899
Betaproteobacteria
Bordetella pertussis J162 [CP013899]
3329922
3329846
-
Gln
TTG
-
¡û
>C003736
BX640411
Betaproteobacteria
Bordetella pertussis Tohama I [BX640411]
3330593
3330517
-
Gln
TTG
[Ensembl]
¡û
>C013406
CP000284
Betaproteobacteria
Methylobacillus flagellatus KT [CP000284]
708619
708543
-
Gln
TTG
[Ensembl]
¡û
>W141164355
AXRW02000053
Betaproteobacteria
Bordetella pertussis STO1-CHOC-0021 [AXRW]
47277
47353
+
Gln
TTG
[ENA]
¡û
>W141164924
AXSJ02000082
Betaproteobacteria
Bordetella pertussis STO1-SEAT-0004 [AXSJ]
50900
50976
+
Gln
TTG
[ENA]
¡û
>W141199803
AYXH01000018
Betaproteobacteria
Bordetella pertussis CHLA-11 [AYXH]
47241
47317
+
Gln
TTG
[ENA]
¡û
>W141277162
JAEJ01000040
Betaproteobacteria
Bordetella petrii J49 [JAEJ]
33548
33472
-
Gln
TTG
[ENA]
¡û
>WENV183664767
ORJL010407485
[ORJL] groundwater metagenome; groundwater
818
742
-
Gln
TTG
[ENA]
¢þ
>WENV183679286
ORMF010040453
[ORMF] groundwater metagenome; groundwater
658
582
-
Gln
TTG
[ENA]
¢þ
>WENV183684111
ORMF010663794
[ORMF] groundwater metagenome; groundwater
556
480
-
Gln
TTG
[ENA]
¢þ
>WENV183732707
PJTX01007364
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
257
333
+
Gln
TTG
[ENA]
¢þ
>WENV170708937
LNFM01000039
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
113942
113866
-
Gln
TTG
[ENA]
¢þ
>WENV170709068
LNFM01000090
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5613
5537
-
Gln
TTG
[ENA]
¢þ
>WENV170709266
LNFM01000226
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
124667
124743
+
Gln
TTG
[ENA]
¢þ
>WENV170709997
LNFM01001032
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
41814
41890
+
Gln
TTG
[ENA]
¢þ
>WENV170710310
LNFM01001511
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
21700
21624
-
Gln
TTG
[ENA]
¢þ
>WENV170712442
LNFM01013397
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3717
3641
-
Gln
TTG
[ENA]
¢þ
>WENV170784640
MCNF01000233
[MCNF] bioreactor metagenome; arboretum soil enriched with benzalkonium chloride
12358
12434
+
Gln
TTG
[ENA]
¢þ
>C181022650
CP016967
Betaproteobacteria
Bordetella pertussis E025 [CP016967]
3329934
3329858
-
Gln
TTG
-
¡û
>C181023624
CP017121
Betaproteobacteria
Bordetella pertussis J172 [CP017121]
721418
721494
+
Gln
TTG
-
¡û
>C181023745
CP017123
Betaproteobacteria
Bordetella pertussis J153 [CP017123]
3334106
3334030
-
Gln
TTG
-
¡û
>C181024221
CP017163
Betaproteobacteria
Bordetella pertussis J108 [CP017163]
3334071
3333995
-
Gln
TTG
-
¡û
>C181028761
CP017883
Betaproteobacteria
Bordetella pertussis I385 [CP017883]
3335190
3335114
-
Gln
TTG
-
¡û
>C181034088
CP018893
Betaproteobacteria
Bordetella holmesii [CP018893]
2797407
2797331
-
Gln
TTG
-
¡û
>C181045680
CP020649
Betaproteobacteria
Bordetella bronchiseptica E010 [CP020649]
937291
937367
+
Gln
TTG
-
¡û
>C181045920
CP020653
Betaproteobacteria
Bordetella holmesii C690 [CP020653]
2795749
2795673
-
Gln
TTG
-
¡û
>C181046922
CP020819
Betaproteobacteria
Bordetella bronchiseptica D973 [CP020819]
947049
947125
+
Gln
TTG
-
¡û
>C191017020
CP019931
Betaproteobacteria
Bordetella parapertussis E843 [CP019931]
879023
879099
+
Gln
TTG
-
¡û
>C191029512
CP025068
Betaproteobacteria
Bordetella parapertussis B144 [CP025068]
879034
879110
+
Gln
TTG
-
¡û
>C191032804
CP025356
Betaproteobacteria
Bordetella pertussis H034 [CP025356]
3420299
3420223
-
Gln
TTG
-
¡û
>C191032832
CP025357
Betaproteobacteria
Bordetella pertussis F578 [CP025357]
722470
722546
+
Gln
TTG
-
¡û
>C191033758
CP025375
Betaproteobacteria
Bordetella pertussis I439 [CP025375]
3334111
3334035
-
Gln
TTG
-
¡û
>C191036091
CP025525
Betaproteobacteria
Bordetella pertussis I420 [CP025525]
3338305
3338229
-
Gln
TTG
-
¡û
>C191042432
CP026431
Betaproteobacteria
Bordetella pertussis J363 [CP026431]
3340893
3340817
-
Gln
TTG
-
¡û
>C191042559
CP026434
Betaproteobacteria
Bordetella pertussis J357 [CP026434]
661587
661663
+
Gln
TTG
-
¡û
>C191042880
CP026440
Betaproteobacteria
Bordetella pertussis J323 [CP026440]
3335162
3335086
-
Gln
TTG
-
¡û
>W141520691
JGWA01000016
Betaproteobacteria
Bordetella holmesii CDC-H719-BH [JGWA]
34125
34049
-
Gln
TTG
[ENA]
¡û
>C191044209
CP026467
Betaproteobacteria
Bordetella pertussis J401 [CP026467]
722470
722546
+
Gln
TTG
-
¡û
>C191045627
CP026624
Betaproteobacteria
Bordetella pertussis J525 [CP026624]
3334997
3334921
-
Gln
TTG
-
¡û
>C191045932
CP026630
Betaproteobacteria
Bordetella pertussis J378 [CP026630]
3333320
3333244
-
Gln
TTG
-
¡û
>C191047207
CP026888
Betaproteobacteria
Bordetella pertussis J695 [CP026888]
3332030
3331954
-
Gln
TTG
-
¡û
>C191047481
CP026894
Betaproteobacteria
Bordetella pertussis J683 [CP026894]
722470
722546
+
Gln
TTG
-
¡û
>C191047804
CP026900
Betaproteobacteria
Bordetella pertussis J656 [CP026900]
3333358
3333282
-
Gln
TTG
-
¡û
>W141522740
JGXP01000051
Betaproteobacteria
Bordetella bronchiseptica MBORD681 [JGXP]
28677
28753
+
Gln
TTG
[ENA]
¡û
>C191110382
CP033730
Betaproteobacteria
Achromobacter denitrificans PheN1 [CP033730]
3423055
3423131
+
Gln
TTG
-
¡û
>C191206969
LR134329
Betaproteobacteria
Bordetella parapertussis NCTC10524 [LR134329]
1941553
1941629
+
Gln
TTG
-
¡û
>W1910699104
MEQX01000024
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_63_19 [MEQX]
57474
57398
-
Gln
TTG
[ENA]
¡û
>W1910699169
MEQZ01000151
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_65_20 [MEQZ]
3935
3859
-
Gln
TTG
[ENA]
¡û
>W1910699192
MERA01000201
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_65_24 [MERA]
77
1
-
Gln
TTG
[ENA]
¡û
>W1910699471
MERJ01000274
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_63_13 [MERJ]
3303
3227
-
Gln
TTG
[ENA]
¡û
>W1910699510
MERL01000118
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_110 [MERL]
7277
7201
-
Gln
TTG
[ENA]
¡û
>W1911200402
NRER01000030
Betaproteobacteria
Bordetella bronchiseptica SH03 [NRER]
35366
35290
-
Gln
TTG
[ENA]
¡û
>W1911238574
NSCW01000355
Betaproteobacteria
Bordetella pertussis VBD1 [NSCW]
684
760
+
Gln
TTG
[ENA]
¡û
>W1911747026
QVTB01000001
Betaproteobacteria
Bordetella avium BA3 [QVTB]
184729
184653
-
Gln
TTG
[ENA]
¡û
>W1810576187
QENE01000002
Betaproteobacteria
Achromobacter xylosoxidans 5146 [QENE]
104841
104917
+
Gln
TTG
[ENA]
¡û
>C151025467
CP007495
Betaproteobacteria
Bordetella holmesii 44057 [CP007495]
417560
417484
-
Gln
TTG
[Ensembl]
¡û
>C151104995
LN849008
Betaproteobacteria
Bordetella pertussis D420 [LN849008]
1056306
1056382
+
Gln
TTG
[Ensembl]
¡û
>W1510135575
CFXX01000318
Betaproteobacteria
Bordetella pertussis B159 [CFXX]
2722
2646
-
Gln
TTG
[ENA]
¡û
>W1510138273
CGAD01000176
Betaproteobacteria
Bordetella pertussis B002 [CGAD]
2743
2667
-
Gln
TTG
[ENA]
¡û
>W1510138575
CGAK01000317
Betaproteobacteria
Bordetella pertussis B091 [CGAK]
1161
1237
+
Gln
TTG
[ENA]
¡û
>W1510145640
CGFZ01000124
Betaproteobacteria
Bordetella pertussis B287 [CGFZ]
431
507
+
Gln
TTG
[ENA]
¡û
>W1510189945
CHKZ01000109
Betaproteobacteria
Bordetella pertussis B272 [CHKZ]
431
507
+
Gln
TTG
[ENA]
¡û
>W1510535575
CSLW01000093
Betaproteobacteria
Bordetella pertussis B124 [CSLW]
2731
2655
-
Gln
TTG
[ENA]
¡û
>W1510535894
CSMD01000072
Betaproteobacteria
Bordetella pertussis B286 [CSMD]
10054
10130
+
Gln
TTG
[ENA]
¡û
>W1510536163
CSMJ01000003
Betaproteobacteria
Bordetella pertussis B072 [CSMJ]
14927
14851
-
Gln
TTG
[ENA]
¡û
>W1510537978
CSNU01000005
Betaproteobacteria
Bordetella pertussis B132 [CSNU]
14928
14852
-
Gln
TTG
[ENA]
¡û
>W1510539899
CSPI01000227
Betaproteobacteria
Bordetella pertussis B170 [CSPI]
2685
2761
+
Gln
TTG
[ENA]
¡û
>W1510540940
CSQD01000247
Betaproteobacteria
Bordetella pertussis B004 [CSQD]
2737
2813
+
Gln
TTG
[ENA]
¡û
>W1510542859
CSRS01000004
Betaproteobacteria
Bordetella pertussis B283 [CSRS]
28655
28731
+
Gln
TTG
[ENA]
¡û
>W1510543355
CSSC01000323
Betaproteobacteria
Bordetella pertussis B066 [CSSC]
1163
1239
+
Gln
TTG
[ENA]
¡û
>W1510543641
CSSI01000064
Betaproteobacteria
Bordetella pertussis B071 [CSSI]
10137
10213
+
Gln
TTG
[ENA]
¡û
>W1510639332
CVJF01000317
Betaproteobacteria
Bordetella pertussis B303 [CVJF]
2730
2654
-
Gln
TTG
[ENA]
¡û
>W1511310862
JPQP01000023
Betaproteobacteria
Bordetella trematum HR18 [JPQP]
326678
326602
-
Gln
TTG
[ENA]
¡û
>W1511393779
JTAT01000001
Betaproteobacteria
Achromobacter xylosoxidans FDAARGOS_88 [JTAT]
4026885
4026809
-
Gln
TTG
[ENA]
¡û
>C161024239
CP010263
Betaproteobacteria
Bordetella pertussis I646 [CP010263]
3334131
3334055
-
Gln
TTG
-
¡û
>C161024317
CP010265
Betaproteobacteria
Bordetella pertussis I669 [CP010265]
721588
721664
+
Gln
TTG
-
¡û
>C161028912
CP010840
Betaproteobacteria
Bordetella pertussis H379 [CP010840]
722468
722544
+
Gln
TTG
-
¡û
>C161035799
CP011447
Betaproteobacteria
Bordetella pertussis B3913 [CP011447]
3337285
3337209
-
Gln
TTG
-
¡û
>C161096217
CP016338
Betaproteobacteria
Bordetella pertussis B202 [CP016338]
3357764
3357688
-
Gln
TTG
-
¡û
>W1610093320
CYSX01000001
Betaproteobacteria
Achromobacter dolens 2789STDY5608607 [CYSX]
748885
748961
+
Gln
TTG
[ENA]
¡û
>W1610752845
LNDW01000022
Betaproteobacteria
Betaproteobacteria bacterium Ga0077527 [LNDW]
162004
162080
+
Gln
TTG
[ENA]
¡û
>W1710096528
CYSX01000001
Betaproteobacteria
Achromobacter dolens 2789STDY5608607 [CYSX]
748885
748961
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK