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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180312 (85 seq.)
>W1710815945
LKKQ01000078
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense [LKKQ]
191325
191409
+
Leu
CAA
[ENA]
¡û
>W1712109999
NJFP01000003
Gammaproteobacteria
Hafnia alvei [NJFP]
440461
440377
-
Leu
CAA
[ENA]
¡û
>C171002681
CP009769
Gammaproteobacteria
Pectobacterium brasiliense BC1 [CP009769]
422543
422459
-
Leu
CAA
-
¡û
>C171105199
CP020350
Gammaproteobacteria
Pectobacterium brasiliense SX309 [CP020350]
4428979
4428895
-
Leu
CAA
-
¡û
>WENV180143599
OATY01000008
[OATY] human gut metagenome; faeces
134226
134310
+
Leu
CAA
[ENA]
¢þ
>W141147739
AWXH01000002
Gammaproteobacteria
Serratia sp. ATCC 39006 [AWXH]
754275
754359
+
Leu
CAA
[ENA]
¡û
>WENV183109693
OLNN01016737
[OLNN] human gut metagenome; faeces
1898
1814
-
Leu
CAA
[ENA]
¢þ
>WENV183371344
OLXV01018526
[OLXV] human gut metagenome; feces
1511
1427
-
Leu
CAA
[ENA]
¢þ
>W141350015
JCKH01000005
Gammaproteobacteria
Hafnia alvei FB1 [JCKH]
86405
86321
-
Leu
CAA
[ENA]
¡û
>WENV170707952
LNAP01041544
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1308
1224
-
Leu
CAA
[ENA]
¢þ
>C181002167
AP017469
Gammaproteobacteria
Hafnia sp. CBA7124 [AP017469]
3969816
3969732
-
Leu
CAA
-
¡û
>C181055085
CP021971
Gammaproteobacteria
Hafnia alvei CBA7135 [CP021971]
3870906
3870822
-
Leu
CAA
-
¡û
>C181105091
CP024780
Gammaproteobacteria
Pectobacterium brasiliense BZA12 [CP024780]
2825450
2825366
-
Leu
CAA
-
¡û
>C181112979
CP025084
Gammaproteobacteria
Serratia sp. ATCC 39006 [CP025084]
34387
34303
-
Leu
CAA
-
¡û
>C181113053
CP025085
Gammaproteobacteria
Serratia sp. ATCC 39006 [CP025085]
34387
34303
-
Leu
CAA
-
¡û
>C191087426
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
4357616
4357532
-
Leu
CAA
-
¡û
>C191126463
CP034481
Gammaproteobacteria
Rahnella aquatilis KM25 [CP034481]
4234760
4234676
-
Leu
CAA
-
¡û
>C191126539
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
4234604
4234520
-
Leu
CAA
-
¡û
>C191126616
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
4314940
4314856
-
Leu
CAA
-
¡û
>C191151805
CP036490
Gammaproteobacteria
Rahnella aquatilis MEM40 [CP036490]
1987527
1987443
-
Leu
CAA
-
¡û
>C191152032
CP036514
Gammaproteobacteria
Hafnia alvei PCM_1220 [CP036514]
3922197
3922113
-
Leu
CAA
-
¡û
>W09110793
ABVX01000041
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliensis PBR1692 [ABVX]
37033
37117
+
Leu
CAA
[ENA]
¡û
>W141710403
JMPJ01000017
Gammaproteobacteria
Ewingella americana ATCC 33852 [JMPJ]
142323
142407
+
Leu
CAA
[ENA]
¡û
>W141710463
JMPK01000004
Gammaproteobacteria
Hafnia alvei ATCC 13337 [JMPK]
64121
64205
+
Leu
CAA
[ENA]
¡û
>W141710735
JMPO01000127
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [JMPO]
11637
11553
-
Leu
CAA
[ENA]
¡û
>W141809943
JPSM01000013
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense [JPSM]
425874
425790
-
Leu
CAA
[ENA]
¡û
>W141810011
JPSN01000005
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense [JPSN]
253686
253770
+
Leu
CAA
[ENA]
¡û
>W141810114
JPSO01000062
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense [JPSO]
284205
284289
+
Leu
CAA
[ENA]
¡û
>W141816178
JQJR01000006
Gammaproteobacteria
Rahnella sp. WP5 [JQJR]
402273
402189
-
Leu
CAA
[ENA]
¡û
>W141821861
JQOD01000001
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense [JQOD]
1823144
1823060
-
Leu
CAA
[ENA]
¡û
>W141821922
JQOE01000001
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense [JQOE]
401589
401505
-
Leu
CAA
[ENA]
¡û
>W1910211952
FMIQ01000073
Gammaproteobacteria
Hafnia alvei GB001 [FMIQ]
4489
4405
-
Leu
CAA
[ENA]
¡û
>W1910584915
JYDF01000022
Gammaproteobacteria
Rahnella sp. NRRL B-41462 [JYDF]
48737
48653
-
Leu
CAA
[ENA]
¡û
>W1910584978
JYDG01000059
Gammaproteobacteria
Rahnella sp. AN3-3W3 [JYDG]
22963
23047
+
Leu
CAA
[ENA]
¡û
>W1910649346
LXYV01000744
Gammaproteobacteria
Ewingella americana BRK18a [LXYV]
1394
1310
-
Leu
CAA
[ENA]
¡û
>W1910649394
LXYV01000789
Gammaproteobacteria
Ewingella americana BRK18a [LXYV]
355457
355373
-
Leu
CAA
[ENA]
¡û
>C09108399
CP001657
Gammaproteobacteria
Pectobacterium carotovorum subsp. carotovorum PC1 [CP001657]
446324
446408
+
Leu
CAA
[Ensembl]
¡û
>W1910655813
MAEN01000001
Gammaproteobacteria
Rahnella victoriana BRK18a [MAEN]
4086116
4086200
+
Leu
CAA
[ENA]
¡û
>W1910696141
MEHU01000001
Gammaproteobacteria
Enterobacteriaceae bacterium Larv1_ips [MEHU]
588357
588441
+
Leu
CAA
[ENA]
¡û
>W1910869880
NCQL01000049
Gammaproteobacteria
Pectobacterium carotovorum BF45 [NCQL]
38634
38550
-
Leu
CAA
[ENA]
¡û
>W1910869933
NCQM01000065
Gammaproteobacteria
Pectobacterium carotovorum BF20 [NCQM]
23494
23578
+
Leu
CAA
[ENA]
¡û
>W1911239285
NSDJ01000001
Gammaproteobacteria
Rahnella variigena CIP 105588 [NSDJ]
1305685
1305769
+
Leu
CAA
[ENA]
¡û
>W1911686115
QKVV01000001
Gammaproteobacteria
Rahnella variigena VCR3 [QKVV]
1265613
1265697
+
Leu
CAA
[ENA]
¡û
>W1911693603
QLTF01000001
Gammaproteobacteria
Rahnella sp. NFIX50 [QLTF]
530988
530904
-
Leu
CAA
[ENA]
¡û
>W1911811823
QZDG01000008
Gammaproteobacteria
Pectobacterium carotovorum S1.16.01.3K [QZDG]
78302
78386
+
Leu
CAA
[ENA]
¡û
>W1911811897
QZDI01000015
Gammaproteobacteria
Pectobacterium carotovorum S4.16.03.1C [QZDI]
78302
78386
+
Leu
CAA
[ENA]
¡û
>W1810160143
PJDL01000003
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense F157 [PJDL]
287105
287021
-
Leu
CAA
[ENA]
¡û
>W1810160245
PJDM01000039
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense F152 [PJDM]
312
396
+
Leu
CAA
[ENA]
¡û
>W1810239914
PPSR01000004
Gammaproteobacteria
Rahnella aquatilis DLL7529 [PPSR]
219591
219675
+
Leu
CAA
[ENA]
¡û
>W1810543403
QDKI01000008
Gammaproteobacteria
Brenneria roseae subsp. roseae LMG 27714 [QDKI]
5660
5576
-
Leu
CAA
[ENA]
¡û
>W1810543474
QDKJ01000005
Gammaproteobacteria
Brenneria roseae subsp. americana LMG 27715 [QDKJ]
174964
175048
+
Leu
CAA
[ENA]
¡û
>W1810627526
QHMC01000004
Gammaproteobacteria
Pectobacterium carotovorum subsp. carotovorum ATCC 39048 [QHMC]
97708
97624
-
Leu
CAA
[ENA]
¡û
>C151057778
CP009706
Gammaproteobacteria
Hafnia alvei FB1 [CP009706]
4257145
4257061
-
Leu
CAA
[Ensembl]
¡û
>C11118356
CP002505
Gammaproteobacteria
Rahnella aceris Y9602 [CP002505]
4214556
4214472
-
Leu
CAA
[Ensembl]
¡û
>W1511389801
JSXC01000003
Gammaproteobacteria
Pectobacterium fontis M022 [JSXC]
86974
87058
+
Leu
CAA
[ENA]
¡û
>W1511399549
JTET01000016
Gammaproteobacteria
Hafnia alvei DSM 30098 [JTET]
76446
76362
-
Leu
CAA
[ENA]
¡û
>W1511399613
JTEU02000006
Gammaproteobacteria
Hafnia alvei DSM 30099 [JTEU]
129058
129142
+
Leu
CAA
[ENA]
¡û
>W1511433708
JUHL01000001
Gammaproteobacteria
Rahnella aquatilis OV588 [JUHL]
254915
254999
+
Leu
CAA
[ENA]
¡û
>W1511433791
JUHM01000004
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
167577
167493
-
Leu
CAA
[ENA]
¡û
>W1511435367
JUJB01000016
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense YC D49 [JUJB]
88888
88972
+
Leu
CAA
[ENA]
¡û
>W1511435380
JUJC01000001
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense YC D52 [JUJC]
189116
189200
+
Leu
CAA
[ENA]
¡û
>W1511435479
JUJD01000007
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense YC D62 [JUJD]
168949
169033
+
Leu
CAA
[ENA]
¡û
>W1511435518
JUJE01000002
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense YC D64 [JUJE]
163698
163782
+
Leu
CAA
[ENA]
¡û
>W1511435596
JUJF01000008
Gammaproteobacteria
Pectobacterium brasiliense subsp. carotovorum BC S2 [JUJF]
175588
175672
+
Leu
CAA
[ENA]
¡û
>W1511435676
JUJG01000005
Gammaproteobacteria
Pectobacterium carotovorum subsp. carotovorum YC D57 [JUJG]
176745
176829
+
Leu
CAA
[ENA]
¡û
>W1511435707
JUJH01000001
Gammaproteobacteria
Pectobacterium brasiliense subsp. carotovorum YC D46 [JUJH]
170475
170559
+
Leu
CAA
[ENA]
¡û
>W1511435845
JUJJ01000005
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense YC D21 [JUJJ]
178908
178992
+
Leu
CAA
[ENA]
¡û
>W1511435978
JUJL01000002
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense YC T31 [JUJL]
163926
164010
+
Leu
CAA
[ENA]
¡û
>W1511436034
JUJM01000002
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense YC T3 [JUJM]
163687
163771
+
Leu
CAA
[ENA]
¡û
>W1511436109
JUJN01000005
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense YC D65 [JUJN]
181027
181111
+
Leu
CAA
[ENA]
¡û
>W1511436256
JUJP01000005
Gammaproteobacteria
Pectobacterium brasiliense subsp. carotovorum YC D60 [JUJP]
77980
78064
+
Leu
CAA
[ENA]
¡û
>W1511436401
JUJR01000007
Gammaproteobacteria
Pectobacterium carotovorum subsp. carotovorum BC T2 [JUJR]
77613
77697
+
Leu
CAA
[ENA]
¡û
>W1511436534
JUJT01000015
Gammaproteobacteria
Pectobacterium brasiliense subsp. carotovorum BC D6 [JUJT]
7877
7961
+
Leu
CAA
[ENA]
¡û
>W1511586384
LAZF01000023
Gammaproteobacteria
Obesumbacterium proteus LE8 [LAZF]
109508
109424
-
Leu
CAA
[ENA]
¡û
>W1511586417
LAZG01000007
Gammaproteobacteria
Hafnia alvei ATCC 29926 [LAZG]
149692
149776
+
Leu
CAA
[ENA]
¡û
>W1511705416
LGRF01000002
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense BD255 [LGRF]
187122
187206
+
Leu
CAA
[ENA]
¡û
>C121009647
CP003244
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [CP003244]
4239334
4239250
-
Leu
CAA
[Ensembl]
¡û
>C121012501
CP003403
Gammaproteobacteria
Rahnella aquatilis HX2 [CP003403]
4308497
4308413
-
Leu
CAA
[Ensembl]
¡û
>C161074172
CP014608
Gammaproteobacteria
Obesumbacterium proteus DSM 2777 [CP014608]
1251567
1251651
+
Leu
CAA
-
¡û
>C161086841
CP015379
Gammaproteobacteria
Hafnia alvei HUMV-5920 [CP015379]
2088301
2088385
+
Leu
CAA
-
¡û
>W1610005760
ALIU01000005
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliensis ICMP 19477 [ALIU]
1195902
1195818
-
Leu
CAA
[ENA]
¡û
>C131006413
CP003776
Gammaproteobacteria
Pectobacterium carotovorum subsp. carotovorum PCC21 [CP003776]
448784
448868
+
Leu
CAA
[Ensembl]
¡û
>W1610680042
LKKQ01000078
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense [LKKQ]
191325
191409
+
Leu
CAA
[ENA]
¡û
>W1610994951
LXEX01000016
Gammaproteobacteria
Obesumbacterium proteus ATCC 12841 [LXEX]
87924
87840
-
Leu
CAA
[ENA]
¡û
>W1710005521
ALIU01000005
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliensis ICMP 19477 [ALIU]
1195902
1195818
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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