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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180319 (45 seq.)
>W1711055220
LRUK01000043
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
12805
12721
-
Leu
CAA
[ENA]
¡û
>W1711089886
LTAB01000008
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
12809
12725
-
Leu
CAA
[ENA]
¡û
>W1711250025
LYMJ01000004
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
12805
12721
-
Leu
CAA
[ENA]
¡û
>W1711434838
MINO01000090
Alphaproteobacteria
Sphingobium phenoxybenzoativorans [MINO]
3767
3683
-
Leu
CAA
[ENA]
¡û
>W1712084234
NHRH01000249
Alphaproteobacteria
Sphingomonas sp. CDS-1 [NHRH]
3664
3748
+
Leu
CAA
[ENA]
¡û
>C171019690
CP013070
Alphaproteobacteria
Sphingobium indicum B90A [CP013070]
1044007
1044091
+
Leu
CAA
-
¡û
>C171108848
CP020538
Alphaproteobacteria
Sphingobium herbicidovorans MH [CP020538]
32921
33005
+
Leu
CAA
-
¡û
>W131196343
ASTG01000006
Alphaproteobacteria
Sphingobium bisphenolivorans YL23 [ASTG]
35790
35706
-
Leu
CAA
[ENA]
¡û
>W131224725
AUDA01000105
Alphaproteobacteria
Sphingobium indicum IP26 [AUDA]
19072
18988
-
Leu
CAA
[ENA]
¡û
>WENV180039706
LLBY010131934
[LLBY] soil metagenome; soil from tomato rhizosphere
464
380
-
Leu
CAA
[ENA]
¢þ
>W141076273
ATDO01000076
Alphaproteobacteria
Sphingobium sp. HDIP04 [ATDO]
64100
64184
+
Leu
CAA
[ENA]
¡û
>W141078096
ATHO01000070
Alphaproteobacteria
Sphingobium quisquiliarum P25 [ATHO]
71752
71836
+
Leu
CAA
[ENA]
¡û
>W141231047
BATN01000101
Alphaproteobacteria
Sphingobium fuliginis KK22 [BATN]
4165
4249
+
Leu
CAA
[ENA]
¡û
>W141285079
JANF02000047
Alphaproteobacteria
Sphingobium indicum F2 [JANF]
3367
3283
-
Leu
CAA
[ENA]
¡û
>WENV183734237
PJTZ01000332
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
10203
10287
+
Leu
CAA
[ENA]
¢þ
>W141400560
JDRU02000858
Alphaproteobacteria
Sphingomonas sp. BHC-A [JDRU]
3485
3569
+
Leu
CAA
[ENA]
¡û
>W141484902
JFYY01000023
Alphaproteobacteria
Sphingomonas paucimobilis [JFYY]
45567
45651
+
Leu
CAA
[ENA]
¡û
>W141484999
JFZA02000023
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [JFZA]
152605
152689
+
Leu
CAA
[ENA]
¡û
>C191185558
CP041016
Alphaproteobacteria
Sphingobium fuliginis ATCC 27551 [CP041016, CP041017]
1937866
1937782
-
Leu
CAA
-
¡û
>W141726164
JNAC01000165
Alphaproteobacteria
Sphingobium sp. DC-2 [JNAC]
29052
29136
+
Leu
CAA
[ENA]
¡û
>W141815952
JQJN01000001
Alphaproteobacteria
Caulobacter henricii [JQJN]
121520
121436
-
Leu
CAA
[ENA]
¡û
>W1910613324
LGRA01000008
Alphaproteobacteria
Azospirillum sp. TSO35-2 [LGRA]
474600
474516
-
Leu
CAA
[ENA]
¡û
>W1910649277
LXYF01000001
Alphaproteobacteria
Sphingobium sp. SA916 [LXYF]
12849
12765
-
Leu
CAA
[ENA]
¡û
>W1910889711
NETV01000001
Alphaproteobacteria
Sphingobium sp. LB126 [NETV]
2909743
2909827
+
Leu
CAA
[ENA]
¡û
>W1911139221
NOXS01000030
Alphaproteobacteria
Elstera cyanobacteriorum TH019 [NOXS]
176247
176331
+
Leu
CAA
[ENA]
¡û
>W1911495414
OBMU01000001
Alphaproteobacteria
Novosphingobium sp. Chol11 [OBMU]
1615671
1615587
-
Leu
CAA
[ENA]
¡û
>W1810000454
BEWI01000031
Alphaproteobacteria
Sphingobium fuliginis OMI [BEWI]
498681
498765
+
Leu
CAA
[ENA]
¡û
>C151074562
CP010954
Alphaproteobacteria
Sphingobium sp. YBL2 [CP010954]
4351471
4351387
-
Leu
CAA
[Ensembl]
¡û
>W10126757
AEDK01000001
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
719546
719462
-
Leu
CAA
[ENA]
¡û
>C10111685
AP010803
Alphaproteobacteria
Sphingobium indicum UT26S [AP010803, AP010804]
2079298
2079214
-
Leu
CAA
[Ensembl]
¡û
>C11119801
CP002798
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [CP002798, CP002799]
1180673
1180589
-
Leu
CAA
[Ensembl]
¡û
>W11134018
AEDK01000001
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
719546
719462
-
Leu
CAA
[ENA]
¡û
>W1511592125
LBIC01000019
Alphaproteobacteria
Sphingobium chungbukense DJ77 [LBIC]
20274
20190
-
Leu
CAA
[ENA]
¡û
>W1511646475
LECE01000060
Alphaproteobacteria
Sphingomonas sp. MEA3-1 [LECE]
25374
25458
+
Leu
CAA
[ENA]
¡û
>C161003369
CP005083
Alphaproteobacteria
Sphingobium sp. TKS [CP005083, CP005084]
2849174
2849090
-
Leu
CAA
[Ensembl]
¡û
>C161003421
CP005188
Alphaproteobacteria
Sphingobium sp. MI1205 [CP005188, CP005189]
2070918
2070834
-
Leu
CAA
[Ensembl]
¡û
>C161092721
CP015986
Alphaproteobacteria
Sphingobium sp. EP60837 [CP015986, CP015987]
2594202
2594286
+
Leu
CAA
[Ensembl]
¡û
>W121071143
AJXQ01000092
Alphaproteobacteria
Sphingobium indicum B90A [AJXQ]
18694
18778
+
Leu
CAA
[ENA]
¡û
>W1610076937
BCZD01000008
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
165446
165530
+
Leu
CAA
[ENA]
¡û
>W1610609166
LFVX01000030
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
33024
32940
-
Leu
CAA
[ENA]
¡û
>W1610896266
LRUK01000043
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
12805
12721
-
Leu
CAA
[ENA]
¡û
>W1610924230
LTAB01000008
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
12809
12725
-
Leu
CAA
[ENA]
¡û
>W1611016907
LYMJ01000004
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
12805
12721
-
Leu
CAA
[ENA]
¡û
>W1710074626
BCZD01000008
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
165446
165530
+
Leu
CAA
[ENA]
¡û
>W1710730453
LFVX01000030
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
33024
32940
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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