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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180370 (76 seq.)
>W1711942198
NBAT01000012
Gammaproteobacteria
Pseudomonas chlororaphis subsp. chlororaphis [NBAT]
236120
236036
-
Leu
CAA
[ENA]
¡û
>W141076030
ATBG01000024
Gammaproteobacteria
Pseudomonas chlororaphis HT66 [ATBG]
97476
97560
+
Leu
CAA
[ENA]
¡û
>W141147022
AWWJ01000066
Gammaproteobacteria
Pseudomonas chlororaphis YL-1 [AWWJ]
389285
389369
+
Leu
CAA
[ENA]
¡û
>W141195470
AYUD01000001
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca PB-St2 [AYUD]
2244179
2244263
+
Leu
CAA
[ENA]
¡û
>WENV170706190
LNAP01001604
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
29118
29034
-
Leu
CAA
[ENA]
¢þ
>C181000249
AP014623
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca StFRB508 [AP014623]
5477910
5477994
+
Leu
CAA
-
¡û
>C181115842
CP025309
Gammaproteobacteria
Pseudomonas chlororaphis Lzh-T5 [CP025309]
5533403
5533487
+
Leu
CAA
-
¡û
>C181158148
CP027656
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ZJU60 [CP027656]
5544785
5544869
+
Leu
CAA
-
¡û
>C191051933
CP027707
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium DSM 21509 [CP027707]
5762378
5762462
+
Leu
CAA
-
¡û
>C191051998
CP027708
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ATCC 17411 [CP027708]
5831340
5831424
+
Leu
CAA
-
¡û
>C191052063
CP027709
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ATCC 17809 [CP027709]
5831347
5831431
+
Leu
CAA
-
¡û
>C191052128
CP027710
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium SLPH10 [CP027710]
5950376
5950460
+
Leu
CAA
-
¡û
>C191052193
CP027711
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ChPhzTR44 [CP027711]
5610452
5610536
+
Leu
CAA
-
¡û
>C191052258
CP027712
Gammaproteobacteria
Pseudomonas chlororaphis subsp. chlororaphis DSM 50083 [CP027712]
5553613
5553697
+
Leu
CAA
-
¡û
>C191052323
CP027713
Gammaproteobacteria
Pseudomonas chlororaphis TAMOak81 [CP027713]
5395552
5395636
+
Leu
CAA
-
¡û
>C191052388
CP027714
Gammaproteobacteria
Pseudomonas chlororaphis ATCC 17415 [CP027714]
5377018
5377102
+
Leu
CAA
-
¡û
>C191052453
CP027715
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca M12 [CP027715]
5433272
5433356
+
Leu
CAA
-
¡û
>C191052519
CP027716
Gammaproteobacteria
Pseudomonas chlororaphis Pb-St2 [CP027716]
5347093
5347177
+
Leu
CAA
-
¡û
>C191052583
CP027717
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca PCM 2210 [CP027717]
5529751
5529835
+
Leu
CAA
-
¡û
>C191052648
CP027718
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca Q16 [CP027718]
5606690
5606774
+
Leu
CAA
-
¡û
>C191052713
CP027719
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens P2 [CP027719]
5912565
5912649
+
Leu
CAA
-
¡û
>C191052778
CP027720
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens DSM 6698 [CP027720]
5733484
5733568
+
Leu
CAA
-
¡û
>C191052843
CP027721
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens ChPhzTR36 [CP027721]
5634630
5634714
+
Leu
CAA
-
¡û
>C191052908
CP027722
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens C50 [CP027722]
5447772
5447856
+
Leu
CAA
-
¡û
>C191053780
CP027735
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium DTR133 [CP027735]
5664467
5664551
+
Leu
CAA
-
¡û
>C191053845
CP027736
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium PCL1391 [CP027736]
5563102
5563186
+
Leu
CAA
-
¡û
>C191053910
CP027737
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium PCL1607 [CP027737]
5620584
5620668
+
Leu
CAA
-
¡û
>C191053975
CP027738
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ChPhzS135 [CP027738]
5656711
5656795
+
Leu
CAA
-
¡û
>C191054040
CP027739
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ToZa7 [CP027739]
5707589
5707673
+
Leu
CAA
-
¡û
>C191054105
CP027740
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ChPhzS140 [CP027740]
5820565
5820649
+
Leu
CAA
-
¡û
>C191054170
CP027741
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca 449 [CP027741]
5687592
5687676
+
Leu
CAA
-
¡û
>C191054235
CP027742
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca 464 [CP027742]
5689975
5690059
+
Leu
CAA
-
¡û
>C191054300
CP027743
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca CW2 [CP027743]
5609134
5609218
+
Leu
CAA
-
¡û
>C191054365
CP027744
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca M71 [CP027744]
5524582
5524666
+
Leu
CAA
-
¡û
>C191054430
CP027745
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca K27 [CP027745]
5585716
5585800
+
Leu
CAA
-
¡û
>C191054495
CP027746
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca DSM 19603 [CP027746]
5801911
5801995
+
Leu
CAA
-
¡û
>C191054560
CP027747
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens 66 [CP027747]
5509458
5509542
+
Leu
CAA
-
¡û
>C191054625
CP027748
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens ChPhzS23 [CP027748]
5454510
5454594
+
Leu
CAA
-
¡û
>C191054690
CP027749
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens ChPhzTR39 [CP027749]
5711978
5712062
+
Leu
CAA
-
¡û
>C191054755
CP027750
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens ChPhzS24 [CP027750]
5609023
5609107
+
Leu
CAA
-
¡û
>C191054820
CP027751
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens ChPhzTR18 [CP027751]
5528128
5528212
+
Leu
CAA
-
¡û
>C191054885
CP027752
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens ChPhzTR38 [CP027752]
5656889
5656973
+
Leu
CAA
-
¡û
>C191054949
CP027753
Gammaproteobacteria
Pseudomonas chlororaphis B25 [CP027753]
5684553
5684637
+
Leu
CAA
-
¡û
>C191207258
LR134334
Gammaproteobacteria
Pseudomonas chlororaphis NCTC7357 [LR134334]
2803626
2803710
+
Leu
CAA
-
¡û
>W1910211336
FMCZ01000002
Gammaproteobacteria
Pseudomonas chlororaphis [FMCZ]
705056
704972
-
Leu
CAA
[ENA]
¡û
>W1910635894
LNTS01000006
Gammaproteobacteria
Pseudomonas chlororaphis L19 [LNTS]
263689
263773
+
Leu
CAA
[ENA]
¡û
>W1910766267
MOAN01000107
Gammaproteobacteria
Pseudomonas chlororaphis 14B11 [MOAN]
174915
174999
+
Leu
CAA
[ENA]
¡û
>W1910766269
MOAO01000002
Gammaproteobacteria
Pseudomonas chlororaphis 48B8 [MOAO]
766569
766653
+
Leu
CAA
[ENA]
¡û
>W1910768262
MOBW01000053
Gammaproteobacteria
Pseudomonas chlororaphis 48G9 [MOBW]
25262
25178
-
Leu
CAA
[ENA]
¡û
>W1911492470
OBDX01000005
Gammaproteobacteria
Pseudomonas sp. LAMO17WK12:I10 [OBDX]
10942
10858
-
Leu
CAA
[ENA]
¡û
>W1911680640
QJKE01000005
Gammaproteobacteria
Pseudomonas sp. LAMO17WK12:I9 [QJKE]
10941
10857
-
Leu
CAA
[ENA]
¡û
>W1810208651
POGE01000002
Gammaproteobacteria
Pseudomonas sp. FW306-2-2C-D06C [POGE]
177824
177740
-
Leu
CAA
[ENA]
¡û
>W1810208706
POGF01000003
Gammaproteobacteria
Pseudomonas sp. GW456-L14 [POGF]
159047
159131
+
Leu
CAA
[ENA]
¡û
>W1810208791
POGG01000017
Gammaproteobacteria
Pseudomonas sp. GW456-L12 [POGG]
131567
131651
+
Leu
CAA
[ENA]
¡û
>W1810208836
POGH01000026
Gammaproteobacteria
Pseudomonas sp. FW305-76 GW247-5R2A [POGH]
31629
31545
-
Leu
CAA
[ENA]
¡û
>W1810208890
POGI01000009
Gammaproteobacteria
Pseudomonas sp. FW126-L8 [POGI]
160164
160248
+
Leu
CAA
[ENA]
¡û
>W1810208931
POGJ01000002
Gammaproteobacteria
Pseudomonas sp. FW305-25 [POGJ]
352450
352534
+
Leu
CAA
[ENA]
¡û
>W1810239153
PPSD01000081
Gammaproteobacteria
Pseudomonas sp. GW531-T4 [PPSD]
6394
6478
+
Leu
CAA
[ENA]
¡û
>W1810624893
QHHP01000034
Gammaproteobacteria
Pseudomonas sp. RW409 [QHHP]
61593
61509
-
Leu
CAA
[ENA]
¡û
>W1810670619
QJRW01000010
Gammaproteobacteria
Pseudomonas chlororaphis LBs-160603 [QJRW]
177819
177735
-
Leu
CAA
[ENA]
¡û
>W1810692996
QLKZ01000010
Gammaproteobacteria
Pseudomonas chlororaphis HAMBI_1977 [QLKZ]
58439
58523
+
Leu
CAA
[ENA]
¡û
>C151035512
CP008696
Gammaproteobacteria
Pseudomonas chlororaphis PA23 [CP008696]
5584600
5584684
+
Leu
CAA
[Ensembl]
¡û
>C151048342
CP009290
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca JD37 [CP009290]
1366517
1366433
-
Leu
CAA
[Ensembl]
¡û
>W1510014533
BBQB01000006
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521 [BBQB]
248756
248672
-
Leu
CAA
[ENA]
¡û
>C161078792
CP014867
Gammaproteobacteria
Pseudomonas chlororaphis [CP014867]
4229339
4229255
-
Leu
CAA
-
¡û
>W121023632
AHAY01000170
Gammaproteobacteria
Pseudomonas chlororaphis subsp. chlororaphis GP72 [AHAY]
80356
80440
+
Leu
CAA
[ENA]
¡û
>W121032095
AHHJ01000011
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens 30-84 [AHHJ]
791572
791656
+
Leu
CAA
[ENA]
¡û
>W121038997
AHOT01000028
Gammaproteobacteria
Pseudomonas chlororaphis O6 [AHOT]
140722
140806
+
Leu
CAA
[ENA]
¡û
>W121086288
AKJU01000175
Gammaproteobacteria
Pseudomonas sp. GM17 [AKJU]
31513
31429
-
Leu
CAA
[ENA]
¡û
>W1610607752
LFUT01000012
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium [LFUT]
317793
317877
+
Leu
CAA
[ENA]
¡û
>W1710075641
BCZX01000001
Gammaproteobacteria
Pseudomonas chlororaphis subsp. chlororaphis NBRC 3904 [BCZX]
765201
765285
+
Leu
CAA
[ENA]
¡û
>W1710531861
FNPW01000006
Gammaproteobacteria
Pseudomonas sp. NFIX28 [FNPW]
255045
255129
+
Leu
CAA
[ENA]
¡û
>W1710543645
FOAE01000002
Gammaproteobacteria
Pseudomonas sp. NFACC41-3 [FOAE]
247469
247385
-
Leu
CAA
[ENA]
¡û
>W1710573174
FOXG01000001
Gammaproteobacteria
Pseudomonas sp. NFPP07 [FOXG]
780608
780692
+
Leu
CAA
[ENA]
¡û
>W1710609033
FXBP01000003
Gammaproteobacteria
Pseudomonas sp. NFIX51 [FXBP]
783987
784071
+
Leu
CAA
[ENA]
¡û
>W1710729039
LFUT01000012
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium [LFUT]
317793
317877
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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