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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180388 (237 seq.)
>W1710802915
LJYE01000037
Alphaproteobacteria
Bradyrhizobium pachyrhizi [LJYE]
24912
24996
+
Leu
TAG
[ENA]
¡û
>W1710802988
LJYF01000033
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
95486
95402
-
Leu
TAG
[ENA]
¡û
>W1710803039
LJYG01000108
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
692249
692165
-
Leu
TAG
[ENA]
¡û
>W1710854924
LLXX01000033
Alphaproteobacteria
Bradyrhizobium valentinum [LLXX]
125787
125871
+
Leu
TAG
[ENA]
¡û
>W1710854988
LLXY01000167
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
18376
18460
+
Leu
TAG
[ENA]
¡û
>W1710855075
LLXZ01000219
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
3405
3489
+
Leu
TAG
[ENA]
¡û
>W1710855099
LLYA01000155
Alphaproteobacteria
Bradyrhizobium retamae [LLYA]
38124
38208
+
Leu
TAG
[ENA]
¡û
>W1710855129
LLYB01000040
Alphaproteobacteria
Bradyrhizobium lablabi [LLYB]
3784
3868
+
Leu
TAG
[ENA]
¡û
>W1710861416
LMDP01000001
Alphaproteobacteria
Afipia sp. Root123D2 [LMDP]
1205750
1205834
+
Leu
TAG
[ENA]
¡û
>W1710877762
LMQJ01000064
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
166758
166842
+
Leu
TAG
[ENA]
¡û
>W1710891421
LNCU01000096
Alphaproteobacteria
Bradyrhizobium macuxiense BR 10303 [LNCU]
21789
21873
+
Leu
TAG
[ENA]
¡û
>W1710892776
LNEC01000018
Alphaproteobacteria
Bradyrhizobiaceae bacterium Ga0074131 [LNEC]
44070
43986
-
Leu
TAG
[ENA]
¡û
>W1711067390
LSEF01000040
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
47903
47819
-
Leu
TAG
[ENA]
¡û
>W1711073002
LSIC01000145
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
19490
19574
+
Leu
TAG
[ENA]
¡û
>W1711124784
LUKO01000099
Alphaproteobacteria
Bradyrhizobium liaoningense [LUKO]
74198
74282
+
Leu
TAG
[ENA]
¡û
>W1711129634
LUUB01000125
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
97181
97097
-
Leu
TAG
[ENA]
¡û
>W1711138861
LVEM01000001
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
940847
940931
+
Leu
TAG
[ENA]
¡û
>W1711180120
LWIG01000014
Alphaproteobacteria
Bradyrhizobium sacchari BR10280 [LWIG]
101113
101029
-
Leu
TAG
[ENA]
¡û
>W1711193137
LWUI01000011
Alphaproteobacteria
Bradyrhizobium elkanii [LWUI]
268235
268151
-
Leu
TAG
[ENA]
¡û
>W1711206740
LXEM01000022
Alphaproteobacteria
Bradyrhizobium elkanii [LXEM]
189416
189500
+
Leu
TAG
[ENA]
¡û
>W1711317154
MAXB01000012
Alphaproteobacteria
Bradyrhizobium paxllaeri [MAXB]
91770
91854
+
Leu
TAG
[ENA]
¡û
>W1711317228
MAXC01000033
Alphaproteobacteria
Bradyrhizobium sp. LMTR 3 [MAXC]
291747
291831
+
Leu
TAG
[ENA]
¡û
>W1711487044
MKFI01000001
Alphaproteobacteria
Bradyrhizobium mercantei SEMIA 6399 [MKFI]
143304
143220
-
Leu
TAG
[ENA]
¡û
>W1711575776
MNJL01000146
Alphaproteobacteria
Alphaproteobacteria bacterium 13_1_20CM_3_64_12 [MNJL]
1315
1231
-
Leu
TAG
[ENA]
¡û
>W1711612978
MOXO01000025
Alphaproteobacteria
Bradyrhizobium elkanii [MOXO]
36903
36819
-
Leu
TAG
[ENA]
¡û
>W1711636722
MPVQ01000020
Alphaproteobacteria
Bradyrhizobium brasilense UFLA 03-321 [MPVQ]
65078
65162
+
Leu
TAG
[ENA]
¡û
>W1711928317
NAEX01000188
Alphaproteobacteria
Bradyrhizobium canariense [NAEX]
326324
326240
-
Leu
TAG
[ENA]
¡û
>W1711928346
NAEY01000163
Alphaproteobacteria
Bradyrhizobium canariense [NAEY]
114115
114199
+
Leu
TAG
[ENA]
¡û
>W1711928407
NAEZ01000181
Alphaproteobacteria
Bradyrhizobium canariense [NAEZ]
109555
109471
-
Leu
TAG
[ENA]
¡û
>W1711928443
NAFA01000202
Alphaproteobacteria
Bradyrhizobium canariense [NAFA]
99922
100006
+
Leu
TAG
[ENA]
¡û
>W1711928499
NAFB01000193
Alphaproteobacteria
Bradyrhizobium canariense [NAFB]
100137
100221
+
Leu
TAG
[ENA]
¡û
>W1711928521
NAFC01000160
Alphaproteobacteria
Bradyrhizobium canariense [NAFC]
105666
105582
-
Leu
TAG
[ENA]
¡û
>W1711928567
NAFD01000179
Alphaproteobacteria
Bradyrhizobium canariense [NAFD]
66893
66977
+
Leu
TAG
[ENA]
¡û
>W1711928640
NAFE01000224
Alphaproteobacteria
Bradyrhizobium canariense [NAFE]
326336
326252
-
Leu
TAG
[ENA]
¡û
>W1711928688
NAFF01000113
Alphaproteobacteria
Bradyrhizobium canariense [NAFF]
308578
308494
-
Leu
TAG
[ENA]
¡û
>W1711928733
NAFG01000179
Alphaproteobacteria
Bradyrhizobium canariense [NAFG]
308595
308511
-
Leu
TAG
[ENA]
¡û
>W1711928785
NAFH01000178
Alphaproteobacteria
Bradyrhizobium canariense [NAFH]
83950
84034
+
Leu
TAG
[ENA]
¡û
>W1711928817
NAFI01000176
Alphaproteobacteria
Bradyrhizobium canariense [NAFI]
87909
87825
-
Leu
TAG
[ENA]
¡û
>W1711928853
NAFJ01000138
Alphaproteobacteria
Bradyrhizobium canariense [NAFJ]
1255
1339
+
Leu
TAG
[ENA]
¡û
>W1711928907
NAFK01000164
Alphaproteobacteria
Bradyrhizobium canariense [NAFK]
42021
42105
+
Leu
TAG
[ENA]
¡û
>W1711928943
NAFL01000243
Alphaproteobacteria
Bradyrhizobium japonicum [NAFL]
29863
29779
-
Leu
TAG
[ENA]
¡û
>W1712049588
NFUH01000019
Alphaproteobacteria
Bradyrhizobium guangdongense [NFUH]
3552
3468
-
Leu
TAG
[ENA]
¡û
>C171021101
CP013127
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [CP013127]
4649624
4649708
+
Leu
TAG
-
¡û
>C171064677
CP017637
Alphaproteobacteria
Bradyrhizobium japonicum J5 [CP017637]
5079709
5079793
+
Leu
TAG
-
¡û
>C171131962
LT859959
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [LT859959]
4049605
4049521
-
Leu
TAG
-
¡û
>W131164108
ARAG01000009
Alphaproteobacteria
Bradyrhizobium elkanii USDA 76 [ARAG]
1339774
1339690
-
Leu
TAG
[ENA]
¡û
>W131165000
ARBF01000082
Alphaproteobacteria
Bradyrhizobium sp. WSM2793 WSM2793 [ARBF]
122481
122565
+
Leu
TAG
[ENA]
¡û
>W131167472
ARDH01000015
Alphaproteobacteria
Bradyrhizobium sp. WSM4349 WSM4349 [ARDH]
103766
103682
-
Leu
TAG
[ENA]
¡û
>W131170222
ARFJ01000003
Alphaproteobacteria
Bradyrhizobium japonicum USDA 124 [ARFJ]
758196
758112
-
Leu
TAG
[ENA]
¡û
>W131217321
ATWP01000010
Alphaproteobacteria
Bradyrhizobium japonicum is5 [ATWP]
177816
177900
+
Leu
TAG
[ENA]
¡û
>W131227260
AUFA01000003
Alphaproteobacteria
Bradyrhizobium sp. Cp5.3 [AUFA]
52180
52264
+
Leu
TAG
[ENA]
¡û
>W131228562
AUGA01000033
Alphaproteobacteria
Bradyrhizobium sp. th.b2 [AUGA]
65455
65539
+
Leu
TAG
[ENA]
¡û
>W131228696
AUGD01000010
Alphaproteobacteria
Bradyrhizobium japonicum in8p8 [AUGD]
177506
177590
+
Leu
TAG
[ENA]
¡û
>C003075
BA000040
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 USDA110 [BA000040]
5488101
5488017
-
Leu
TAG
[Ensembl]
¡û
>C004067
CP000494
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [CP000494]
4796235
4796151
-
Leu
TAG
[Ensembl]
¡û
>C004112
CU234118
Alphaproteobacteria
Bradyrhizobium sp. ORS 278 ORS278 [CU234118]
4401639
4401555
-
Leu
TAG
[Ensembl]
¡û
>W141001299
ADOU01000070
Alphaproteobacteria
Bradyrhizobium diazoefficiens SEMIA 5080 [ADOU]
310279
310195
-
Leu
TAG
[ENA]
¡û
>WENV180292931
OBIV01716527
[OBIV] soil metagenome; Clay
56
140
+
Leu
TAG
[ENA]
¢þ
>WENV180304143
OBJH01062828
[OBJH] soil metagenome; soil
212
128
-
Leu
TAG
[ENA]
¢þ
>WENV180308498
OBJR01022365
[OBJR] soil metagenome; soil
121
205
+
Leu
TAG
[ENA]
¢þ
>WENV180345187
OBLM01105038
[OBLM] soil metagenome; soil
17
101
+
Leu
TAG
[ENA]
¢þ
>W141041847
AMCQ01000748
Alphaproteobacteria
Bradyrhizobium sp. CCGE-LA001 [AMCQ]
759
675
-
Leu
TAG
[ENA]
¡û
>W141043067
AMFB01000036
Alphaproteobacteria
Bradyrhizobium sp. DFCI-1 [AMFB]
86931
87015
+
Leu
TAG
[ENA]
¡û
>W141063663
APJD01000020
Alphaproteobacteria
Bradyrhizobium sp. OHSU_III [APJD]
137973
138057
+
Leu
TAG
[ENA]
¡û
>WENV181167012
OEIU01006415
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
91
7
-
Leu
TAG
[ENA]
¢þ
>WENV181379282
OFRD01000266
[OFRD] wastewater metagenome; Exp Tend CN 100WW
4141
4225
+
Leu
TAG
[ENA]
¢þ
>WENV181385188
OFRI01045474
[OFRI] wastewater metagenome; Exp Tend VB 90WW
711
627
-
Leu
TAG
[ENA]
¢þ
>WENV181385990
OFRL01000292
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
20355
20271
-
Leu
TAG
[ENA]
¢þ
>WENV181399835
OFSF01000017
[OFSF] wastewater metagenome; Exp Tend VB 100WW
44306
44390
+
Leu
TAG
[ENA]
¢þ
>W141149741
AWZU01000003
Alphaproteobacteria
Bradyrhizobium sp. ARR65 [AWZU]
67269
67353
+
Leu
TAG
[ENA]
¡û
>W141150053
AXAB01000049
Alphaproteobacteria
Bradyrhizobium sp. WSM2254 [AXAB]
26313
26229
-
Leu
TAG
[ENA]
¡û
>W141150122
AXAD01000003
Alphaproteobacteria
Bradyrhizobium arachidis USDA 3384 [AXAD]
417245
417161
-
Leu
TAG
[ENA]
¡û
>W141150239
AXAF01000011
Alphaproteobacteria
Bradyrhizobium ottawaense USDA 4 [AXAF]
58827
58911
+
Leu
TAG
[ENA]
¡û
>W141150266
AXAG01000006
Alphaproteobacteria
Bradyrhizobium japonicum USDA 38 [AXAG]
52276
52360
+
Leu
TAG
[ENA]
¡û
>W141150320
AXAH01000008
Alphaproteobacteria
Bradyrhizobium elkanii USDA 3254 [AXAH]
171114
171198
+
Leu
TAG
[ENA]
¡û
>W141150360
AXAI01000004
Alphaproteobacteria
Bradyrhizobium sp. Tv2a-2 [AXAI]
235319
235235
-
Leu
TAG
[ENA]
¡û
>W141150991
AXAS01000012
Alphaproteobacteria
Bradyrhizobium sp. Ec3.3 [AXAS]
3202
3118
-
Leu
TAG
[ENA]
¡û
>W141151063
AXAT01000218
Alphaproteobacteria
Bradyrhizobium japonicum USDA 135 [AXAT]
2812
2896
+
Leu
TAG
[ENA]
¡û
>W141151073
AXAU01000001
Alphaproteobacteria
Bradyrhizobium murdochi WSM1741 [AXAU]
355922
356006
+
Leu
TAG
[ENA]
¡û
>W141151156
AXAV01000021
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AXAV]
97036
97120
+
Leu
TAG
[ENA]
¡û
>W141151188
AXAW01000007
Alphaproteobacteria
Bradyrhizobium elkanii USDA 3259 [AXAW]
171112
171196
+
Leu
TAG
[ENA]
¡û
>W141151223
AXAX01000002
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [AXAX]
503079
503163
+
Leu
TAG
[ENA]
¡û
>W141151271
AXAY01000003
Alphaproteobacteria
Bradyrhizobium sp. WSM3983 [AXAY]
241032
240948
-
Leu
TAG
[ENA]
¡û
>W141151342
AXAZ01000048
Alphaproteobacteria
Bradyrhizobium sp. WSM1743 [AXAZ]
57653
57569
-
Leu
TAG
[ENA]
¡û
>W141151463
AXBC01000003
Alphaproteobacteria
Bradyrhizobium genosp. SA-4 SA-4 str. CB756 [AXBC]
1415338
1415422
+
Leu
TAG
[ENA]
¡û
>W141168831
AXVG01000011
Alphaproteobacteria
Bradyrhizobium japonicum 22 [AXVG]
1101510
1101594
+
Leu
TAG
[ENA]
¡û
>W141169189
AXVP01000025
Alphaproteobacteria
Bradyrhizobium japonicum USDA 123 [AXVP]
24977
25061
+
Leu
TAG
[ENA]
¡û
>W141194143
AYSU01000009
Alphaproteobacteria
Rhodopseudomonas palustris JSC-3b [AYSU]
507478
507394
-
Leu
TAG
[ENA]
¡û
>W141220440
AZXU01000003
Alphaproteobacteria
Bradyrhizobium sp. WSM1417 [AZXU]
108702
108618
-
Leu
TAG
[ENA]
¡û
>W141233907
BAWE01000005
Alphaproteobacteria
Bradyrhizobium sp. DOA9 [BAWE]
58443
58359
-
Leu
TAG
[ENA]
¡û
>WENV182406266
OIEX01007586
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
398
314
-
Leu
TAG
[ENA]
¢þ
>WENV182409129
OIFG01001981
[OIFG] human gut metagenome; stool
307
223
-
Leu
TAG
[ENA]
¢þ
>WENV182413362
OIFX01002075
[OIFX] human gut metagenome; stool
308
392
+
Leu
TAG
[ENA]
¢þ
>W141240080
CAFK01000111
Alphaproteobacteria
Bradyrhizobium sp. STM 3843 [CAFK]
5392
5476
+
Leu
TAG
[ENA]
¡û
>W141275954
JADK01000007
Alphaproteobacteria
Bradyrhizobium sp. URHA0013 [JADK]
428516
428432
-
Leu
TAG
[ENA]
¡û
>W141278104
JAFC01000013
Alphaproteobacteria
Bradyrhizobium elkanii USDA 94 [JAFC]
42789
42705
-
Leu
TAG
[ENA]
¡û
>WENV182963023
OKWP01000089
[OKWP] human gut metagenome; stool
59867
59783
-
Leu
TAG
[ENA]
¢þ
>WENV182966361
OKWV01001323
[OKWV] human gut metagenome; stool
624
708
+
Leu
TAG
[ENA]
¢þ
>WENV183666593
ORJL010566512
[ORJL] groundwater metagenome; groundwater
1564
1480
-
Leu
TAG
[ENA]
¢þ
>WENV183724344
PJQE01008314
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
577
493
-
Leu
TAG
[ENA]
¢þ
>WENV170553904
CXWK01037222
[CXWK] wastewater metagenome; activated sludge
596
512
-
Leu
TAG
[ENA]
¢þ
>WENV170705919
LNAP01000619
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
39101
39185
+
Leu
TAG
[ENA]
¢þ
>WENV170707469
LNAP01021965
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2196
2280
+
Leu
TAG
[ENA]
¢þ
>WENV170708379
LNAP01075372
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
94
10
-
Leu
TAG
[ENA]
¢þ
>WENV170711233
LNFM01004162
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
44003
43919
-
Leu
TAG
[ENA]
¢þ
>WENV170711631
LNFM01006170
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
6138
6054
-
Leu
TAG
[ENA]
¢þ
>WENV170712418
LNFM01013168
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5443
5359
-
Leu
TAG
[ENA]
¢þ
>C181113195
CP025113
Alphaproteobacteria
Bradyrhizobium sp. SK17 [CP025113]
5678603
5678519
-
Leu
TAG
-
¡û
>C181178152
CP029425
Alphaproteobacteria
Bradyrhizobium ottawaense OO99 [CP029425]
6109134
6109218
+
Leu
TAG
-
¡û
>C181178214
CP029426
Alphaproteobacteria
Bradyrhizobium amphicarpaeae 39S1MB [CP029426]
3698077
3697993
-
Leu
TAG
-
¡û
>C181178260
CP029427
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 85S1MB [CP029427]
3516727
3516643
-
Leu
TAG
-
¡û
>C181181578
CP029603
Alphaproteobacteria
Bradyrhizobium diazoefficiens XF7 [CP029603]
5712059
5711975
-
Leu
TAG
-
¡û
>C181203854
LS398110
Alphaproteobacteria
Bradyrhizobium vignae [LS398110]
3773547
3773631
+
Leu
TAG
-
¡û
>C191019712
CP022219
Alphaproteobacteria
Bradyrhizobium guangxiense CCBAU 53363 [CP022219]
3624313
3624229
-
Leu
TAG
-
¡û
>C191019737
CP022221
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51778 [CP022221]
4565227
4565311
+
Leu
TAG
-
¡û
>C191071692
CP030051
Alphaproteobacteria
Bradyrhizobium guangdongense CCBAU 51649 [CP030051]
4424428
4424344
-
Leu
TAG
-
¡û
>C191071718
CP030053
Alphaproteobacteria
Bradyrhizobium guangzhouense CCBAU 51670 [CP030053]
3325765
3325849
+
Leu
TAG
-
¡û
>C191092045
CP032617
Alphaproteobacteria
Bradyrhizobium diazoefficiens 110spc4 [CP032617]
5423745
5423661
-
Leu
TAG
-
¡û
>C191186664
CP041090
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 65S1MB [CP041090]
2776021
2775937
-
Leu
TAG
-
¡û
>W09104113
AALJ01000003
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [AALJ]
408952
408868
-
Leu
TAG
[ENA]
¡û
>W141730478
JNIJ01000025
Alphaproteobacteria
Bradyrhizobium sp. URHD0069 [JNIJ]
12490
12574
+
Leu
TAG
[ENA]
¡û
>W1910183073
BJNK01000005
Alphaproteobacteria
Bradyrhizobium japonicum NBRC 14783 [BJNK]
59719
59635
-
Leu
TAG
[ENA]
¡û
>W1910183118
BJNL01000014
Alphaproteobacteria
Bradyrhizobium elkanii NBRC 14791 [BJNL]
96999
96915
-
Leu
TAG
[ENA]
¡û
>W1910568913
JHAA01000054
Alphaproteobacteria
Rhodopseudomonas palustris PSBS [JHAA]
2140
2224
+
Leu
TAG
[ENA]
¡û
>W1910598245
LAXE01000001
Alphaproteobacteria
Bradyrhizobium sp. SUTN9-2 [LAXE]
4142799
4142883
+
Leu
TAG
[ENA]
¡û
>W1910598930
LBJC01000005
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 53390 [LBJC]
359693
359777
+
Leu
TAG
[ENA]
¡û
>W1910599001
LBJM01000065
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51787 [LBJM]
93377
93293
-
Leu
TAG
[ENA]
¡û
>W1910599030
LBJQ01000012
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 51757 [LBJQ]
82787
82703
-
Leu
TAG
[ENA]
¡û
>W1910611564
LFJC01000003
Alphaproteobacteria
Bradyrhizobium nitroreducens TSA1 [LFJC]
6051105
6051021
-
Leu
TAG
[ENA]
¡û
>W1910693448
MDEP01000040
Alphaproteobacteria
Bradyrhizobium sp. UASWS1016 [MDEP]
113961
114045
+
Leu
TAG
[ENA]
¡û
>W1910840276
MZXW01000022
Alphaproteobacteria
Bradyrhizobium betae Opo-243 [MZXW]
70833
70749
-
Leu
TAG
[ENA]
¡û
>W1911409783
NWTE01000008
Alphaproteobacteria
Bradyrhizobium diazoefficiens Y21 [NWTE]
89789
89705
-
Leu
TAG
[ENA]
¡û
>W1911409846
NWTF01000015
Alphaproteobacteria
Bradyrhizobium ottawaense L2 [NWTF]
14768
14852
+
Leu
TAG
[ENA]
¡û
>W1911409905
NWTG01000008
Alphaproteobacteria
Bradyrhizobium sp. C9 [NWTG]
194488
194572
+
Leu
TAG
[ENA]
¡û
>W1911410013
NWTI01000016
Alphaproteobacteria
Bradyrhizobium sp. Y36 [NWTI]
181424
181340
-
Leu
TAG
[ENA]
¡û
>W1911629617
PSRT01000146
Alphaproteobacteria
Bradyrhizobium genosp. SA-3 SA-3 Rp7b [PSRT]
17416
17332
-
Leu
TAG
[ENA]
¡û
>W1911809242
QYYD01000034
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.18 [QYYD]
5709
5793
+
Leu
TAG
[ENA]
¡û
>W1911817857
QZMV01000004
Alphaproteobacteria
Bradyrhizobium sp. LVM 105 [QZMV]
9145
9229
+
Leu
TAG
[ENA]
¡û
>W1810089271
PGEQ01000001
Alphaproteobacteria
Bradyrhizobium lablabi GAS165 [PGEQ]
2679545
2679629
+
Leu
TAG
[ENA]
¡û
>W1810089659
PGEV01000001
Alphaproteobacteria
Afipia broomeae GAS525 [PGEV]
2235646
2235562
-
Leu
TAG
[ENA]
¡û
>W1810104417
PGVG01000010
Alphaproteobacteria
Bradyrhizobium forestalis INPA54B [PGVG]
139602
139686
+
Leu
TAG
[ENA]
¡û
>W1810289861
PTFE01000024
Alphaproteobacteria
Bradyrhizobium sp. AC87j1 [PTFE]
41812
41896
+
Leu
TAG
[ENA]
¡û
>W1810367851
PVYZ01000001
Alphaproteobacteria
Rhizobium tropici NFR14 [PVYZ]
388012
387928
-
Leu
TAG
[ENA]
¡û
>W1810395536
PYCM01000424
Alphaproteobacteria
Bradyrhizobium algeriense RST89 [PYCM]
162
246
+
Leu
TAG
[ENA]
¡û
>W1810395598
PYCN01000003
Alphaproteobacteria
Bradyrhizobium algeriense RST91 [PYCN]
11707
11623
-
Leu
TAG
[ENA]
¡û
>W1810400131
PYFV01000045
Alphaproteobacteria
Bradyrhizobium sp. MOS004 [PYFV]
90
6
-
Leu
TAG
[ENA]
¡û
>W1810400132
PYFV01000052
Alphaproteobacteria
Bradyrhizobium sp. MOS004 [PYFV]
4726
4642
-
Leu
TAG
[ENA]
¡û
>W1810400170
PYFW01000011
Alphaproteobacteria
Bradyrhizobium sp. MOS003 [PYFW]
175912
175828
-
Leu
TAG
[ENA]
¡û
>W1810400215
PYFX01000009
Alphaproteobacteria
Bradyrhizobium sp. MOS002 [PYFX]
50090
50174
+
Leu
TAG
[ENA]
¡û
>W1810672290
QJTI01000001
Alphaproteobacteria
Rhodopseudomonas faecalis JCM 11668 [QJTI]
177164
177248
+
Leu
TAG
[ENA]
¡û
>C151066541
CP010313
Alphaproteobacteria
Bradyrhizobium japonicum E109 [CP010313]
4862035
4862119
+
Leu
TAG
[Ensembl]
¡û
>W1510973728
JGCL01000005
Alphaproteobacteria
Bradyrhizobium japonicum FN1 [JGCL]
419665
419749
+
Leu
TAG
[ENA]
¡û
>W1511353646
JRPN01000028
Alphaproteobacteria
Bradyrhizobium japonicum Is-34 [JRPN]
360472
360556
+
Leu
TAG
[ENA]
¡û
>W1511508014
JXOF01000187
Alphaproteobacteria
Bradyrhizobium elkanii UASWS1015 [JXOF]
198951
198867
-
Leu
TAG
[ENA]
¡û
>W1511533290
JYMR01000053
Alphaproteobacteria
Bradyrhizobium sp. LTSP849 [JYMR]
322138
322054
-
Leu
TAG
[ENA]
¡û
>W1511533306
JYMS01000025
Alphaproteobacteria
Bradyrhizobium sp. LTSP857 [JYMS]
103922
103838
-
Leu
TAG
[ENA]
¡û
>W1511533380
JYMT01000042
Alphaproteobacteria
Bradyrhizobium sp. LTSP885 [JYMT]
810052
809968
-
Leu
TAG
[ENA]
¡û
>W1511533417
JYMU01000034
Alphaproteobacteria
Bradyrhizobium sp. LTSPM299 [JYMU]
54310
54226
-
Leu
TAG
[ENA]
¡û
>W1511681439
LFIP01000135
Alphaproteobacteria
Bradyrhizobium embrapense SEMIA 6208 [LFIP]
18597
18513
-
Leu
TAG
[ENA]
¡û
>W1511681471
LFIQ01000077
Alphaproteobacteria
Bradyrhizobium pachyrhizi PAC 48 [LFIQ]
95985
95901
-
Leu
TAG
[ENA]
¡û
>W1511684044
LFLZ01000073
Alphaproteobacteria
Bradyrhizobium tropiciagri SEMIA 6148 [LFLZ]
22300
22384
+
Leu
TAG
[ENA]
¡û
>W1511706700
LGUJ01000011
Alphaproteobacteria
Bradyrhizobium diazoefficiens Is-1 [LGUJ]
581758
581842
+
Leu
TAG
[ENA]
¡û
>C121000471
AP012206
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AP012206]
4816819
4816903
+
Leu
TAG
[Ensembl]
¡û
>C121000721
AP012279
Alphaproteobacteria
Bradyrhizobium cosmicum S23321 [AP012279]
3319048
3319132
+
Leu
TAG
[Ensembl]
¡û
>C161001040
AP014685
Alphaproteobacteria
Bradyrhizobium diazoefficiens NK6 [AP014685]
9438254
9438170
-
Leu
TAG
-
¡û
>C161017379
CP007569
Alphaproteobacteria
Bradyrhizobium japonicum SEMIA 5079 [CP007569]
1813703
1813787
+
Leu
TAG
[Ensembl]
¡û
>C161034253
CP011360
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 [CP011360]
4807769
4807685
-
Leu
TAG
-
¡û
>C161062546
CP013949
Alphaproteobacteria
Bradyrhizobium sp. CCGE-LA001 [CP013949]
4558766
4558682
-
Leu
TAG
[Ensembl]
¡û
>C161097193
CP016428
Alphaproteobacteria
Bradyrhizobium icense LMTR 13 [CP016428]
3955482
3955566
+
Leu
TAG
[Ensembl]
¡û
>C161107844
LN901633
Alphaproteobacteria
Bradyrhizobium sp. [LN901633]
6736364
6736448
+
Leu
TAG
-
¡û
>C161107927
LN907826
Alphaproteobacteria
Bradyrhizobium sp. [LN907826]
4678999
4679083
+
Leu
TAG
-
¡û
>W121036212
AHLW01000001
Alphaproteobacteria
Bradyrhizobium sp. WSM471 [AHLW]
4791072
4790988
-
Leu
TAG
[ENA]
¡û
>W121036457
AHMB01000070
Alphaproteobacteria
Bradyrhizobium sp. WSM1253 [AHMB]
115877
115961
+
Leu
TAG
[ENA]
¡û
>W121062471
AJJK01002193
Alphaproteobacteria
Bradyrhizobium elkanii 587 [AJJK]
367
451
+
Leu
TAG
[ENA]
¡û
>W121065202
AJPV01000251
Alphaproteobacteria
Bradyrhizobium elkanii CCBAU 05737 [AJPV]
13959
14043
+
Leu
TAG
[ENA]
¡û
>W121065261
AJPW01000451
Alphaproteobacteria
Bradyrhizobium elkanii CCBAU 43297 [AJPW]
7994
7910
-
Leu
TAG
[ENA]
¡û
>W121065303
AJPX01000417
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15354 [AJPX]
24674
24758
+
Leu
TAG
[ENA]
¡û
>W121065341
AJPY01000259
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15517 [AJPY]
23644
23728
+
Leu
TAG
[ENA]
¡û
>W121065409
AJPZ01000426
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15618 [AJPZ]
23765
23849
+
Leu
TAG
[ENA]
¡û
>W121065458
AJQA01000350
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 25435 [AJQA]
23774
23858
+
Leu
TAG
[ENA]
¡û
>W121065482
AJQB01000253
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 83623 [AJQB]
9028
8944
-
Leu
TAG
[ENA]
¡û
>W121065535
AJQC01000352
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 05525 [AJQC]
990
1074
+
Leu
TAG
[ENA]
¡û
>W121065600
AJQD01000630
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 83689 [AJQD]
8301
8217
-
Leu
TAG
[ENA]
¡û
>W121065617
AJQE01000116
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 43298 [AJQE]
51359
51275
-
Leu
TAG
[ENA]
¡û
>W121065675
AJQF01000227
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15544 [AJQF]
24215
24131
-
Leu
TAG
[ENA]
¡û
>W121065738
AJQG01000284
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15615 [AJQG]
7611
7527
-
Leu
TAG
[ENA]
¡û
>W121065761
AJQH01000124
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15635 [AJQH]
15313
15397
+
Leu
TAG
[ENA]
¡û
>W121065819
AJQI01000211
Alphaproteobacteria
Bradyrhizobium diazoefficiens CCBAU 41267 [AJQI]
8464
8380
-
Leu
TAG
[ENA]
¡û
>W121065860
AJQJ01000176
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 05623 [AJQJ]
9527
9443
-
Leu
TAG
[ENA]
¡û
>W121065911
AJQK01000162
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 25021 [AJQK]
9536
9452
-
Leu
TAG
[ENA]
¡û
>W121065965
AJQL01000276
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 35157 [AJQL]
7547
7463
-
Leu
TAG
[ENA]
¡û
>W121127072
CAFH01000060
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [CAFH]
70674
70590
-
Leu
TAG
[ENA]
¡û
>W121127125
CAFI01000172
Alphaproteobacteria
Bradyrhizobium sp. ORS 375 [CAFI]
2705
2621
-
Leu
TAG
[ENA]
¡û
>W121127183
CAFJ01000510
Alphaproteobacteria
Bradyrhizobium sp. STM 3809 [CAFJ]
1098
1182
+
Leu
TAG
[ENA]
¡û
>W1610049390
BBEX01000119
Alphaproteobacteria
Bradyrhizobium sp. 17-4 [BBEX]
232
316
+
Leu
TAG
[ENA]
¡û
>C131000810
AP012603
Alphaproteobacteria
Bradyrhizobium oligotrophicum S58 [AP012603]
3854897
3854981
+
Leu
TAG
[Ensembl]
¡û
>W1610514430
FMAE01000005
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
573815
573731
-
Leu
TAG
[ENA]
¡û
>W1610514628
FMAI01000020
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
95447
95531
+
Leu
TAG
[ENA]
¡û
>W1610549172
JXDL01000001
Alphaproteobacteria
Bradyrhizobium sp. AT1 [JXDL]
1145676
1145592
-
Leu
TAG
[ENA]
¡û
>W1610550293
JXJM01000001
Alphaproteobacteria
Bradyrhizobium sp. DOA1 [JXJM]
2740927
2741011
+
Leu
TAG
[ENA]
¡û
>W1610666772
LJYE01000037
Alphaproteobacteria
Bradyrhizobium pachyrhizi [LJYE]
24912
24996
+
Leu
TAG
[ENA]
¡û
>W1610666845
LJYF01000033
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
95486
95402
-
Leu
TAG
[ENA]
¡û
>W1610666896
LJYG01000108
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
692249
692165
-
Leu
TAG
[ENA]
¡û
>W1610717265
LLXX01000033
Alphaproteobacteria
Bradyrhizobium valentinum [LLXX]
125787
125871
+
Leu
TAG
[ENA]
¡û
>W1610717329
LLXY01000167
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
18376
18460
+
Leu
TAG
[ENA]
¡û
>W1610717416
LLXZ01000219
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
3405
3489
+
Leu
TAG
[ENA]
¡û
>W1610717440
LLYA01000155
Alphaproteobacteria
Bradyrhizobium retamae [LLYA]
38124
38208
+
Leu
TAG
[ENA]
¡û
>W1610717470
LLYB01000040
Alphaproteobacteria
Bradyrhizobium lablabi [LLYB]
3784
3868
+
Leu
TAG
[ENA]
¡û
>W1610723762
LMDP01000001
Alphaproteobacteria
Afipia sp. Root123D2 [LMDP]
1205750
1205834
+
Leu
TAG
[ENA]
¡û
>W1610740108
LMQJ01000064
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
166758
166842
+
Leu
TAG
[ENA]
¡û
>W1610751786
LNCU01000096
Alphaproteobacteria
Bradyrhizobium macuxiense BR 10303 [LNCU]
21789
21873
+
Leu
TAG
[ENA]
¡û
>W1610753042
LNEC01000018
Alphaproteobacteria
Bradyrhizobiaceae bacterium Ga0074131 [LNEC]
44070
43986
-
Leu
TAG
[ENA]
¡û
>W1610907960
LSEF01000040
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
47903
47819
-
Leu
TAG
[ENA]
¡û
>W1610912262
LSIC01000145
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
19490
19574
+
Leu
TAG
[ENA]
¡û
>W1610935756
LUKO01000099
Alphaproteobacteria
Bradyrhizobium liaoningense [LUKO]
74198
74282
+
Leu
TAG
[ENA]
¡û
>W1610940707
LUUB01000125
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
97181
97097
-
Leu
TAG
[ENA]
¡û
>W1610949869
LVEM01000001
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
940847
940931
+
Leu
TAG
[ENA]
¡û
>W1611061224
MAXB01000012
Alphaproteobacteria
Bradyrhizobium paxllaeri [MAXB]
91770
91854
+
Leu
TAG
[ENA]
¡û
>W1611061298
MAXC01000033
Alphaproteobacteria
Bradyrhizobium sp. LMTR 3 [MAXC]
291747
291831
+
Leu
TAG
[ENA]
¡û
>W1710045789
BBEX01000119
Alphaproteobacteria
Bradyrhizobium sp. 17-4 [BBEX]
232
316
+
Leu
TAG
[ENA]
¡û
>W1710500120
FMAE01000005
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
573815
573731
-
Leu
TAG
[ENA]
¡û
>W1710500318
FMAI01000020
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
95447
95531
+
Leu
TAG
[ENA]
¡û
>W1710513033
FMZW01000001
Alphaproteobacteria
Bradyrhizobium brasilense R5 [FMZW]
218777
218693
-
Leu
TAG
[ENA]
¡û
>W1710516771
FNCU01000031
Alphaproteobacteria
Bradyrhizobium sp. Rc2d [FNCU]
96222
96306
+
Leu
TAG
[ENA]
¡û
>W1710536603
FNTH01000001
Alphaproteobacteria
Bradyrhizobium erythrophlei [FNTH]
1126967
1126883
-
Leu
TAG
[ENA]
¡û
>W1710546014
FOBX01000007
Alphaproteobacteria
Bradyrhizobium sp. OK095 [FOBX]
400079
399995
-
Leu
TAG
[ENA]
¡û
>W1710564248
FOQJ01000001
Alphaproteobacteria
Bradyrhizobium sp. cf659 [FOQJ]
110741
110825
+
Leu
TAG
[ENA]
¡û
>W1710564424
FOQM01000008
Alphaproteobacteria
Bradyrhizobium sp. Gha [FOQM]
115263
115347
+
Leu
TAG
[ENA]
¡û
>W1710569806
FOUS01000007
Alphaproteobacteria
Bradyrhizobium sp. Rc3b [FOUS]
241394
241310
-
Leu
TAG
[ENA]
¡û
>W1710571294
FOVU01000002
Alphaproteobacteria
Bradyrhizobium sp. Ghvi [FOVU]
380386
380302
-
Leu
TAG
[ENA]
¡û
>W1710578510
FPBQ01000004
Alphaproteobacteria
Bradyrhizobium arachidis [FPBQ]
83151
83235
+
Leu
TAG
[ENA]
¡û
>W1710594254
FSRD01000001
Alphaproteobacteria
Bradyrhizobium erythrophlei [FSRD]
7151978
7152062
+
Leu
TAG
[ENA]
¡û
>W1710652746
JXDL01000001
Alphaproteobacteria
Bradyrhizobium sp. AT1 [JXDL]
1145676
1145592
-
Leu
TAG
[ENA]
¡û
>W1710659019
JXJM01000001
Alphaproteobacteria
Bradyrhizobium sp. DOA1 [JXJM]
2740927
2741011
+
Leu
TAG
[ENA]
¡û
>W1710735579
LGHK01000049
Alphaproteobacteria
Bradyrhizobium sp. NAS96.2 [LGHK]
3327
3243
-
Leu
TAG
[ENA]
¡û
>W1710735660
LGHL01000183
Alphaproteobacteria
Bradyrhizobium sp. NAS80.1 [LGHL]
2759
2843
+
Leu
TAG
[ENA]
¡û
>W1710735714
LGHM01000256
Alphaproteobacteria
Bradyrhizobium sp. AS23.2 [LGHM]
2026
2110
+
Leu
TAG
[ENA]
¡û
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Sequence ID
Genome ID
(or Accession No.)
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(Sample source for ENV)
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Direction
AA
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Decision
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Representative sequence of each cluster
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