This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180400 (54 seq.)
>W1710860250
LMCS01000003
Actinomycetota
Microbacterium sp. Root322 [LMCS]
954676
954592
-
Leu
TAG
[ENA]
¡û
>W1710863984
LMFN01000003
Actinomycetota
Microbacterium sp. Root1433D1 [LMFN]
914091
914007
-
Leu
TAG
[ENA]
¡û
>W1710864553
LMFY01000003
Actinomycetota
Microbacterium sp. Root553 [LMFY]
174560
174476
-
Leu
TAG
[ENA]
¡û
>W1710947785
LOSO01000018
Actinomycetota
Microbacterium sp. CH1 [LOSO]
320133
320049
-
Leu
TAG
[ENA]
¡û
>W131036149
AKVP01000021
Actinomycetota
Microbacterium barkeri 2011-R4 [AKVP]
90094
90178
+
Leu
TAG
[ENA]
¡û
>W131098971
AOSO01000005
Actinomycetota
Microbacterium sp. UCD-TDU [AOSO]
511558
511474
-
Leu
TAG
[ENA]
¡û
>W1711074831
LSJW01000292
Actinomycetota
Microbacterium sp. CCH5-D1 [LSJW]
23435
23351
-
Leu
TAG
[ENA]
¡û
>W131226617
AUEM01000008
Actinomycetota
Microbacterium sp. URHA0036 [AUEM]
145612
145528
-
Leu
TAG
[ENA]
¡û
>W1711589076
MODW01000006
Actinomycetota
Microbacterium sp. LCT-H2 [MODW]
106522
106438
-
Leu
TAG
[ENA]
¡û
>W1711963112
NCTV01000007
Actinomycetota
Microbacterium sp. LEMMJ01 [NCTV]
4193
4109
-
Leu
TAG
[ENA]
¡û
>W141075422
ATAO01000181
Actinomycetota
Microbacterium liquefaciens MF109 [ATAO]
23734
23818
+
Leu
TAG
[ENA]
¡û
>W141187521
AYME01000013
Actinomycetota
Microbacterium paraoxydans DH1b [AYME]
57076
57160
+
Leu
TAG
[ENA]
¡û
>W141289429
JARC01000047
Actinomycetota
Microbacterium sp. Cr-K29 [JARC]
166665
166581
-
Leu
TAG
[ENA]
¡û
>W141289449
JARD01000015
Actinomycetota
Microbacterium sp. Cr-K32 [JARD]
59907
59991
+
Leu
TAG
[ENA]
¡û
>W141289505
JARE01000057
Actinomycetota
Microbacterium sp. Cr-K20 [JARE]
23901
23817
-
Leu
TAG
[ENA]
¡û
>W141289535
JARF01000024
Actinomycetota
Microbacterium sp. Cr-K1W [JARF]
56272
56356
+
Leu
TAG
[ENA]
¡û
>WENV170594220
FUFK011238121
[FUFK] metagenome; unknown
131
47
-
Leu
TAG
[ENA]
¢þ
>C181004104
AP017975
Actinomycetota
Microbacterium sp. TPU 3598 [AP017975]
1288970
1288888
-
Leu
TAG
-
¡û
>C181153095
CP027434
Actinomycetota
Microbacterium sp. str. 'China' [CP027434]
2391720
2391802
+
Leu
TAG
-
¡û
>C181200430
CP031425
Actinomycetota
Microbacterium foliorum NRRL B-24224 [CP031425]
2374264
2374347
+
Leu
TAG
-
¡û
>C191026869
CP024170
Actinomycetota
Microbacterium sp. Y-01 [CP024170]
2573218
2573300
+
Leu
TAG
-
¡û
>C191074628
CP031338
Actinomycetota
Microbacterium oxydans VIU2A [CP031338]
1333502
1333420
-
Leu
TAG
-
¡û
>C191074871
CP031422
Actinomycetota
Microbacterium oxydans HG3 [CP031422]
1316898
1316816
-
Leu
TAG
-
¡û
>W1910183344
BJNQ01000005
Actinomycetota
Microbacterium liquefaciens NBRC 15037 [BJNQ]
51245
51327
+
Leu
TAG
[ENA]
¡û
>W1910184044
BJOG01000007
Actinomycetota
Microbacterium oxydans NBRC 15586 [BJOG]
53470
53552
+
Leu
TAG
[ENA]
¡û
>W1910211971
FMIR01000011
Actinomycetota
Microbacterium oxydans [FMIR]
26009
25927
-
Leu
TAG
[ENA]
¡û
>W1911566471
PCOV01000008
Actinomycetota
Microbacterium sp. MYb66 [PCOV]
167380
167298
-
Leu
TAG
[ENA]
¡û
>W1911566627
PCOY01000047
Actinomycetota
Microbacterium sp. MYb62 [PCOY]
2762
2680
-
Leu
TAG
[ENA]
¡û
>W1911566721
PCPA01000022
Actinomycetota
Microbacterium sp. MYb54 [PCPA]
52211
52293
+
Leu
TAG
[ENA]
¡û
>W1911566864
PCPD01000025
Actinomycetota
Microbacterium sp. MYb50 [PCPD]
52211
52293
+
Leu
TAG
[ENA]
¡û
>W1911567003
PCPG01000004
Actinomycetota
Microbacterium sp. MYb45 [PCPG]
52017
52099
+
Leu
TAG
[ENA]
¡û
>W1911567130
PCPI01000025
Actinomycetota
Microbacterium sp. MYb43 [PCPI]
52211
52293
+
Leu
TAG
[ENA]
¡û
>W1911567174
PCPJ01000024
Actinomycetota
Microbacterium sp. MYb40 [PCPJ]
2827
2745
-
Leu
TAG
[ENA]
¡û
>W1911567265
PCPL01000020
Actinomycetota
Microbacterium sp. MYb32 [PCPL]
52211
52293
+
Leu
TAG
[ENA]
¡û
>W1911567538
PCPQ01000022
Actinomycetota
Microbacterium sp. MYb24 [PCPQ]
2859
2777
-
Leu
TAG
[ENA]
¡û
>W1911594718
PNFU01000003
Actinomycetota
Microbacterium sp. UMB0228 [PNFU]
574042
573960
-
Leu
TAG
[ENA]
¡û
>W1810724670
QOAY01000187
Actinomycetota
Microbacterium sp. H6 [QOAY]
32693
32611
-
Leu
TAG
[ENA]
¡û
>W1510085865
CDWI01000001
Actinomycetota
Microbacterium sp. 3J1 [CDWI]
52678
52762
+
Leu
TAG
[ENA]
¡û
>W1511348053
JRKC01000080
Actinomycetota
Microbacterium sp. ZOR0019 [JRKC]
2832
2748
-
Leu
TAG
[ENA]
¡û
>W1511528700
JYIU01000036
Actinomycetota
Microbacterium foliorum DSM 12966 [JYIU]
19494
19578
+
Leu
TAG
[ENA]
¡û
>W1511528746
JYIV01000022
Actinomycetota
Microbacterium oxydans BEL163 [JYIV]
83075
83159
+
Leu
TAG
[ENA]
¡û
>W1511528798
JYIW01000025
Actinomycetota
Microbacterium oxydans BEL4b [JYIW]
408925
408841
-
Leu
TAG
[ENA]
¡û
>W1511588882
LBCR01000032
Actinomycetota
Microbacterium sp. Ag1 [LBCR]
275755
275671
-
Leu
TAG
[ENA]
¡û
>C161061349
CP013859
Actinomycetota
Microbacterium sp. XT11 [CP013859]
3224878
3224960
+
Leu
TAG
[Ensembl]
¡û
>C161070802
CP014313
Actinomycetota
Microbacterium sp. PAMC 28756 HSR44 [CP014313]
125583
125667
+
Leu
TAG
[Ensembl]
¡û
>W1610068396
BCRH01000116
Actinomycetota
Microbacterium paraoxydans NBRC 103076 [BCRH]
2723
2639
-
Leu
TAG
[ENA]
¡û
>W1610590724
LDRQ01000018
Actinomycetota
Microbacterium oxydans [LDRQ]
59567
59483
-
Leu
TAG
[ENA]
¡û
>W1610722596
LMCS01000003
Actinomycetota
Microbacterium sp. Root322 [LMCS]
954676
954592
-
Leu
TAG
[ENA]
¡û
>W1610726330
LMFN01000003
Actinomycetota
Microbacterium sp. Root1433D1 [LMFN]
914091
914007
-
Leu
TAG
[ENA]
¡û
>W1610726899
LMFY01000003
Actinomycetota
Microbacterium sp. Root553 [LMFY]
174560
174476
-
Leu
TAG
[ENA]
¡û
>W1610803787
LOSO01000018
Actinomycetota
Microbacterium sp. CH1 [LOSO]
320133
320049
-
Leu
TAG
[ENA]
¡û
>W1610914136
LSJW01000292
Actinomycetota
Microbacterium sp. CCH5-D1 [LSJW]
23435
23351
-
Leu
TAG
[ENA]
¡û
>W1710065769
BCRH01000116
Actinomycetota
Microbacterium paraoxydans NBRC 103076 [BCRH]
2723
2639
-
Leu
TAG
[ENA]
¡û
>W1710710004
LDRQ01000018
Actinomycetota
Microbacterium oxydans [LDRQ]
59567
59483
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK