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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180412 (94 seq.)
>W1710866602
LMHP01000003
Alphaproteobacteria
Mesorhizobium sp. Root172 [LMHP]
4176
4092
-
Tyr
GTA
[ENA]
¡û
>W1710989558
LPWA01000013
Alphaproteobacteria
Mesorhizobium loti [LPWA]
3021
2937
-
Tyr
GTA
[ENA]
¡û
>W1711257111
LYTJ01000022
Alphaproteobacteria
Mesorhizobium loti [LYTJ]
92822
92738
-
Tyr
GTA
[ENA]
¡û
>W1711257133
LYTK01000001
Alphaproteobacteria
Mesorhizobium loti [LYTK]
1572234
1572318
+
Tyr
GTA
[ENA]
¡û
>W1711257197
LYTL01000012
Alphaproteobacteria
Mesorhizobium loti [LYTL]
350746
350830
+
Tyr
GTA
[ENA]
¡û
>W1711257227
LYTM01000002
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
58243
58327
+
Tyr
GTA
[ENA]
¡û
>W1711257341
LYTP01000005
Alphaproteobacteria
Mesorhizobium sp. AA23 [LYTP]
132126
132042
-
Tyr
GTA
[ENA]
¡û
>W1711286679
LZTH01000044
Alphaproteobacteria
Mesorhizobium loti [LZTH]
419690
419606
-
Tyr
GTA
[ENA]
¡û
>W1711286741
LZTI01000029
Alphaproteobacteria
Mesorhizobium loti [LZTI]
183177
183093
-
Tyr
GTA
[ENA]
¡û
>W1711286789
LZTJ01000031
Alphaproteobacteria
Mesorhizobium loti [LZTJ]
183177
183093
-
Tyr
GTA
[ENA]
¡û
>W1711286832
LZTK01000010
Alphaproteobacteria
Mesorhizobium loti [LZTK]
212705
212789
+
Tyr
GTA
[ENA]
¡û
>W1711286892
LZTL01000034
Alphaproteobacteria
Mesorhizobium loti [LZTL]
396413
396329
-
Tyr
GTA
[ENA]
¡û
>W1711353157
MDDT01000006
Alphaproteobacteria
Mesorhizobium sp. LCM 4576 [MDDT]
7703
7619
-
Tyr
GTA
[ENA]
¡û
>W1711353224
MDDU01000024
Alphaproteobacteria
Mesorhizobium sp. LCM 4577 [MDDU]
46563
46647
+
Tyr
GTA
[ENA]
¡û
>W1711354739
MDFL01000115
Alphaproteobacteria
Mesorhizobium sp. ORS 3428 ORS3428 [MDFL]
284464
284548
+
Tyr
GTA
[ENA]
¡û
>W1711361589
MDLH01000001
Alphaproteobacteria
Mesorhizobium sp. SEMIA 3007 [MDLH]
4282515
4282599
+
Tyr
GTA
[ENA]
¡û
>W1711385413
MEEE01000215
Alphaproteobacteria
Mesorhizobium sp. SCN 65-12 [MEEE]
6175
6091
-
Tyr
GTA
[ENA]
¡û
>W1711505387
MKVL01000030
Alphaproteobacteria
Mesorhizobium sp. 65-26 [MKVL]
6157
6073
-
Tyr
GTA
[ENA]
¡û
>C171037594
CP015318
Alphaproteobacteria
Mesorhizobium amorphae CCNWGS0123 [CP015318]
4243534
4243450
-
Tyr
GTA
-
¡û
>W131163226
AQZP01000001
Alphaproteobacteria
Mesorhizobium loti NZP2037 [AQZP]
1548806
1548890
+
Tyr
GTA
[ENA]
¡û
>W131219423
ATYO01000015
Alphaproteobacteria
Mesorhizobium sp. WSM3224 [ATYO]
2451
2367
-
Tyr
GTA
[ENA]
¡û
>W131226537
AUEL01000004
Alphaproteobacteria
Mesorhizobium sp. URHA0056 [AUEL]
306429
306513
+
Tyr
GTA
[ENA]
¡û
>W131250150
CAUM01000102
Alphaproteobacteria
Mesorhizobium metallidurans STM 2683 [CAUM]
6959
7043
+
Tyr
GTA
[ENA]
¡û
>C013682
BA000012
Alphaproteobacteria
Mesorhizobium japonicum MAFF 303099 [BA000012]
182332
182416
+
Tyr
GTA
[Ensembl]
¡û
>WENV180020407
FTCZ01003066
[FTCZ] metagenome; soil
879
963
+
Tyr
GTA
[ENA]
¢þ
>W141073773
ASTL01000009
Alphaproteobacteria
Mesorhizobium ciceri ca181 [ASTL]
6703
6787
+
Tyr
GTA
[ENA]
¡û
>WENV181308230
OFIS01001119
[OFIS] sludge metagenome; sludge
5019
4935
-
Tyr
GTA
[ENA]
¢þ
>W141198964
AYWP01000035
Alphaproteobacteria
Mesorhizobium sp. LNHC232B00 [AYWP]
51886
51802
-
Tyr
GTA
[ENA]
¡û
>W141199028
AYWR01000002
Alphaproteobacteria
Mesorhizobium sp. LNHC221B00 [AYWR]
117445
117361
-
Tyr
GTA
[ENA]
¡û
>W141200942
AZAM01000001
Alphaproteobacteria
Mesorhizobium japonicum R7A [AZAM]
1809935
1810019
+
Tyr
GTA
[ENA]
¡û
>W141266664
CCMY01000012
Alphaproteobacteria
Mesorhizobium sp. ORS 3324 ORS3324 [CCMY]
2119
2203
+
Tyr
GTA
[ENA]
¡û
>W141266722
CCMZ01000029
Alphaproteobacteria
Mesorhizobium plurifarium [CCMZ]
90929
90845
-
Tyr
GTA
[ENA]
¡û
>W141266773
CCNA01000022
Alphaproteobacteria
Mesorhizobium sp. SOD10 [CCNA]
3304
3220
-
Tyr
GTA
[ENA]
¡û
>W141266810
CCNB01000006
Alphaproteobacteria
Mesorhizobium plurifarium [CCNB]
216932
216848
-
Tyr
GTA
[ENA]
¡û
>W141266905
CCNE01000018
Alphaproteobacteria
Mesorhizobium plurifarium [CCNE]
4139
4055
-
Tyr
GTA
[ENA]
¡û
>C191125494
CP034443
Alphaproteobacteria
Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2 [CP034443]
5044923
5044839
-
Tyr
GTA
-
¡û
>C191125564
CP034444
Alphaproteobacteria
Mesorhizobium sp. M1D.F.Ca.ET.043.01.1.1 [CP034444]
49838
49754
-
Tyr
GTA
-
¡û
>C191125585
CP034445
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.02.1.1 [CP034445]
6427592
6427676
+
Tyr
GTA
-
¡û
>C191125649
CP034446
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.05.1.1 [CP034446]
1967772
1967688
-
Tyr
GTA
-
¡û
>C191125691
CP034447
Alphaproteobacteria
Mesorhizobium sp. M1E.F.Ca.ET.045.02.1.1 [CP034447]
5648129
5648045
-
Tyr
GTA
-
¡û
>C191125735
CP034448
Alphaproteobacteria
Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 [CP034448]
5023144
5023228
+
Tyr
GTA
-
¡û
>C191125793
CP034449
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1 [CP034449]
6679752
6679668
-
Tyr
GTA
-
¡û
>C191125815
CP034451
Alphaproteobacteria
Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 [CP034451]
506498
506582
+
Tyr
GTA
-
¡û
>W1910840314
MZXX01000014
Alphaproteobacteria
Mesorhizobium erdmanii Opo-242 [MZXX]
183314
183230
-
Tyr
GTA
[ENA]
¡û
>W1911084334
NNRI01000022
Alphaproteobacteria
Mesorhizobium sophorae ICMP 19535 [NNRI]
151758
151674
-
Tyr
GTA
[ENA]
¡û
>W1911242216
NSFO01000010
Alphaproteobacteria
Mesorhizobium loti R7ANSxCC1192 [NSFO]
26391
26307
-
Tyr
GTA
[ENA]
¡û
>W1911242262
NSFP01000010
Alphaproteobacteria
Mesorhizobium loti R7ANSxAA22 [NSFP]
26391
26307
-
Tyr
GTA
[ENA]
¡û
>W1911242309
NSFQ01000009
Alphaproteobacteria
Mesorhizobium loti R7ANSx3876 [NSFQ]
26391
26307
-
Tyr
GTA
[ENA]
¡û
>W1911242354
NSFR01000010
Alphaproteobacteria
Mesorhizobium loti R7ANSx3859 [NSFR]
26391
26307
-
Tyr
GTA
[ENA]
¡û
>W1911242410
NSFS01000009
Alphaproteobacteria
Mesorhizobium loti R7ANSx1497 [NSFS]
26391
26307
-
Tyr
GTA
[ENA]
¡û
>W1911242462
NSFT01000006
Alphaproteobacteria
Mesorhizobium sp. WSM4313 [NSFT]
3053
2969
-
Tyr
GTA
[ENA]
¡û
>W1911242497
NSFU01000007
Alphaproteobacteria
Mesorhizobium sp. WSM4312 [NSFU]
304895
304979
+
Tyr
GTA
[ENA]
¡û
>W1911242545
NSFV01000003
Alphaproteobacteria
Mesorhizobium sp. WSM4311 [NSFV]
27414
27330
-
Tyr
GTA
[ENA]
¡û
>W1911242594
NSFW01000005
Alphaproteobacteria
Mesorhizobium sp. WSM4308 [NSFW]
357912
357996
+
Tyr
GTA
[ENA]
¡û
>W1911242637
NSFX01000001
Alphaproteobacteria
Mesorhizobium sp. WSM4304 [NSFX]
27398
27314
-
Tyr
GTA
[ENA]
¡û
>W1911242697
NSFY01000006
Alphaproteobacteria
Mesorhizobium sp. WSM3882 [NSFY]
28742
28658
-
Tyr
GTA
[ENA]
¡û
>W1911242752
NSFZ01000008
Alphaproteobacteria
Mesorhizobium sp. WSM3879 [NSFZ]
28689
28605
-
Tyr
GTA
[ENA]
¡û
>W1911242791
NSGA01000004
Alphaproteobacteria
Mesorhizobium sp. WSM3876 [NSGA]
26121
26037
-
Tyr
GTA
[ENA]
¡û
>W1911242842
NSGB01000010
Alphaproteobacteria
Mesorhizobium sp. WSM3868 [NSGB]
221204
221288
+
Tyr
GTA
[ENA]
¡û
>W1911242892
NSGC01000007
Alphaproteobacteria
Mesorhizobium sp. WSM3866 [NSGC]
339720
339804
+
Tyr
GTA
[ENA]
¡û
>W1911242953
NSGD01000027
Alphaproteobacteria
Mesorhizobium sp. WSM3864 [NSGD]
3367
3283
-
Tyr
GTA
[ENA]
¡û
>W1911243001
NSGE01000007
Alphaproteobacteria
Mesorhizobium sp. WSM3862 [NSGE]
287627
287711
+
Tyr
GTA
[ENA]
¡û
>W1911243049
NSGF01000017
Alphaproteobacteria
Mesorhizobium sp. WSM3860 [NSGF]
104612
104696
+
Tyr
GTA
[ENA]
¡û
>W1911243109
NSGG01000026
Alphaproteobacteria
Mesorhizobium sp. WSM3859 [NSGG]
3009
2925
-
Tyr
GTA
[ENA]
¡û
>W1911405020
NWQG01000105
Alphaproteobacteria
Mesorhizobium sanjuanii BSA136 [NWQG]
41108
41192
+
Tyr
GTA
[ENA]
¡û
>W1911682386
QKOD01000002
Alphaproteobacteria
Mesorhizobium japonicum Opo-235 [QKOD]
91335
91251
-
Tyr
GTA
[ENA]
¡û
>W1911695550
QMBQ01000008
Alphaproteobacteria
Mesorhizobium atlanticum CNPSo 3140 [QMBQ]
294837
294921
+
Tyr
GTA
[ENA]
¡û
>W1911824688
QZWZ01000012
Alphaproteobacteria
Mesorhizobium waimense ICMP19557 [QZWZ]
60906
60990
+
Tyr
GTA
[ENA]
¡û
>W1911824766
QZXA01000018
Alphaproteobacteria
Mesorhizobium jarvisii LMG 28313 [QZXA]
81042
80958
-
Tyr
GTA
[ENA]
¡û
>W1810699009
QMBP01000012
Alphaproteobacteria
Mesorhizobium hawassense AC99b [QMBP]
2819
2735
-
Tyr
GTA
[ENA]
¡û
>W1810784428
QRAR01000011
Alphaproteobacteria
Mesorhizobium sp. AP09 [QRAR]
308967
309051
+
Tyr
GTA
[ENA]
¡û
>W10106967
ACZA01000006
Alphaproteobacteria
Mesorhizobium opportunistum WSM2075 [ACZA]
3125
3041
-
Tyr
GTA
[ENA]
¡û
>W11109256
ACZA01000006
Alphaproteobacteria
Mesorhizobium opportunistum WSM2075 [ACZA]
3125
3041
-
Tyr
GTA
[ENA]
¡û
>C11114853
CP002279
Alphaproteobacteria
Mesorhizobium opportunistum WSM2075 [CP002279]
4773287
4773203
-
Tyr
GTA
[Ensembl]
¡û
>W11181260
AGIX01000006
Alphaproteobacteria
Mesorhizobium australicum WSM2073 [AGIX]
430882
430966
+
Tyr
GTA
[ENA]
¡û
>C161003967
CP006581
Alphaproteobacteria
Mesorhizobium huakuii 7653R [CP006581]
2031286
2031370
+
Tyr
GTA
[Ensembl]
¡û
>C161093995
CP016079
Alphaproteobacteria
Mesorhizobium loti NZP2037 [CP016079]
4938228
4938144
-
Tyr
GTA
-
¡û
>W121018065
AGSN01000123
Alphaproteobacteria
Mesorhizobium amorphae CCNWGS0123 [AGSN]
1117
1033
-
Tyr
GTA
[ENA]
¡û
>W1610083692
CCND01000049
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
3382
3298
-
Tyr
GTA
[ENA]
¡û
>C131003398
CP003358
Alphaproteobacteria
Mesorhizobium australicum WSM2073 [CP003358]
4336401
4336317
-
Tyr
GTA
[Ensembl]
¡û
>W1610728948
LMHP01000003
Alphaproteobacteria
Mesorhizobium sp. Root172 [LMHP]
4176
4092
-
Tyr
GTA
[ENA]
¡û
>W1610844434
LPWA01000013
Alphaproteobacteria
Mesorhizobium loti [LPWA]
3021
2937
-
Tyr
GTA
[ENA]
¡û
>W1611020087
LYTJ01000022
Alphaproteobacteria
Mesorhizobium loti [LYTJ]
92822
92738
-
Tyr
GTA
[ENA]
¡û
>W1611020109
LYTK01000001
Alphaproteobacteria
Mesorhizobium loti [LYTK]
1572234
1572318
+
Tyr
GTA
[ENA]
¡û
>W1611020173
LYTL01000012
Alphaproteobacteria
Mesorhizobium loti [LYTL]
350746
350830
+
Tyr
GTA
[ENA]
¡û
>W1611020203
LYTM01000002
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
58243
58327
+
Tyr
GTA
[ENA]
¡û
>W1611020363
LYTP01000005
Alphaproteobacteria
Mesorhizobium sp. AA23 [LYTP]
132126
132042
-
Tyr
GTA
[ENA]
¡û
>W1611044240
LZTH01000044
Alphaproteobacteria
Mesorhizobium loti [LZTH]
419690
419606
-
Tyr
GTA
[ENA]
¡û
>W1611044302
LZTI01000029
Alphaproteobacteria
Mesorhizobium loti [LZTI]
183177
183093
-
Tyr
GTA
[ENA]
¡û
>W1611044350
LZTJ01000031
Alphaproteobacteria
Mesorhizobium loti [LZTJ]
183177
183093
-
Tyr
GTA
[ENA]
¡û
>W1611044393
LZTK01000010
Alphaproteobacteria
Mesorhizobium loti [LZTK]
212705
212789
+
Tyr
GTA
[ENA]
¡û
>W1611044453
LZTL01000034
Alphaproteobacteria
Mesorhizobium loti [LZTL]
396413
396329
-
Tyr
GTA
[ENA]
¡û
>W1710088709
CCND01000049
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
3382
3298
-
Tyr
GTA
[ENA]
¡û
>W1710571240
FOVT01000005
Alphaproteobacteria
Mesorhizobium sp. NFR06 [FOVT]
327818
327902
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK