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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180430 (87 seq.)
>W1710815807
LKKO01000039
Alphaproteobacteria
Methylobacterium sp. GXS13 [LKKO]
43602
43686
+
Leu
CAG
[ENA]
¡û
>W1710872700
LMME01000014
Alphaproteobacteria
Methylobacterium sp. Leaf85 [LMME]
19141
19225
+
Leu
CAG
[ENA]
¡û
>W1710872796
LMMG01000041
Alphaproteobacteria
Methylobacterium sp. Leaf86 [LMMG]
765724
765808
+
Leu
CAG
[ENA]
¡û
>W1710872898
LMMI01000060
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
204237
204321
+
Leu
CAG
[ENA]
¡û
>W1710872984
LMMK01000055
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
41395
41479
+
Leu
CAG
[ENA]
¡û
>W1710873023
LMML01000030
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
42758
42842
+
Leu
CAG
[ENA]
¡û
>W1710873092
LMMN01000010
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
6559
6475
-
Leu
CAG
[ENA]
¡û
>W1710873169
LMMP01000001
Alphaproteobacteria
Methylobacterium sp. Leaf91 [LMMP]
65812
65728
-
Leu
CAG
[ENA]
¡û
>W1710873237
LMMQ01000023
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
25927
25843
-
Leu
CAG
[ENA]
¡û
>W1710873358
LMMS01000014
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
35035
34951
-
Leu
CAG
[ENA]
¡û
>W1710873438
LMMU01000001
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
676440
676524
+
Leu
CAG
[ENA]
¡û
>W1710873563
LMMW01000034
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
200711
200795
+
Leu
CAG
[ENA]
¡û
>W1710873603
LMMX01000023
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
17819
17735
-
Leu
CAG
[ENA]
¡û
>W1710873713
LMMZ01000039
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
141146
141062
-
Leu
CAG
[ENA]
¡û
>W1710873801
LMNB01000023
Alphaproteobacteria
Methylobacterium sp. Leaf106 [LMNB]
56528
56444
-
Leu
CAG
[ENA]
¡û
>W1710873878
LMND01000008
Alphaproteobacteria
Methylobacterium sp. Leaf108 [LMND]
23823
23739
-
Leu
CAG
[ENA]
¡û
>W1710873939
LMNE01000045
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
61919
62003
+
Leu
CAG
[ENA]
¡û
>W1710874016
LMNG01000015
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
33234
33150
-
Leu
CAG
[ENA]
¡û
>W1710874146
LMNJ01000006
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
44536
44620
+
Leu
CAG
[ENA]
¡û
>W1710874268
LMNL01000034
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
86437
86353
-
Leu
CAG
[ENA]
¡û
>W1710874331
LMNN01000001
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
39736
39652
-
Leu
CAG
[ENA]
¡û
>W1710874437
LMNP01000024
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
26574
26490
-
Leu
CAG
[ENA]
¡û
>W1710874477
LMNQ01000007
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
85569
85485
-
Leu
CAG
[ENA]
¡û
>W1710874575
LMNS01000023
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
9498
9414
-
Leu
CAG
[ENA]
¡û
>W1710874674
LMNU01000045
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
148941
148857
-
Leu
CAG
[ENA]
¡û
>W1710877806
LMQK01000030
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
285012
284928
-
Leu
CAG
[ENA]
¡û
>W1710878274
LMQV01000001
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
490827
490911
+
Leu
CAG
[ENA]
¡û
>W1710878529
LMRA01000011
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
2908
2824
-
Leu
CAG
[ENA]
¡û
>W1710878617
LMRC01000007
Alphaproteobacteria
Methylobacterium sp. Leaf466 [LMRC]
11413
11329
-
Leu
CAG
[ENA]
¡û
>W1710878724
LMRE01000034
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
12972
12888
-
Leu
CAG
[ENA]
¡û
>W1710879191
LMRM01000020
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
2190
2106
-
Leu
CAG
[ENA]
¡û
>W1711571736
MNAO01000014
Alphaproteobacteria
Methylorubrum extorquens [MNAO]
28550
28466
-
Leu
CAG
[ENA]
¡û
>W131159756
AQVT01000001
Alphaproteobacteria
Methylobacterium sp. 88A [AQVT]
4061026
4061110
+
Leu
CAG
[ENA]
¡û
>W131166768
ARCS01000002
Alphaproteobacteria
Methylobacterium sp. 77 [ARCS]
3929383
3929467
+
Leu
CAG
[ENA]
¡û
>C171092169
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
2227653
2227569
-
Leu
CAG
-
¡û
>C171115179
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
820941
821025
+
Leu
CAG
-
¡û
>W08002414
ABEX01000010
Alphaproteobacteria
Methylorubrum extorquens CM4 [ABEX]
116902
116821
-
Leu
CAG
[ENA]
¡û
>C08006501
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
4845357
4845441
+
Leu
CAG
[Ensembl]
¡û
>W141277756
JAEV01000005
Alphaproteobacteria
Methylobacterium sp. 10 [JAEV]
21109
21193
+
Leu
CAG
[ENA]
¡û
>WENV170577813
FSSH01001534
[FSSH] freshwater metagenome; drinking water
4195
4111
-
Leu
CAG
[ENA]
¢þ
>C181227878
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
893048
892964
-
Leu
CAG
-
¡û
>W09106831
ABEC01000001
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
364345
364429
+
Leu
CAG
[ENA]
¡û
>C09107431
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
5048681
5048765
+
Leu
CAG
[Ensembl]
¡û
>C09107517
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
5344579
5344663
+
Leu
CAG
[Ensembl]
¡û
>C09107618
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
4908699
4908783
+
Leu
CAG
[Ensembl]
¡û
>W1810057216
PDHT01000029
Alphaproteobacteria
Methylobacterium sp. V23 [PDHT]
56459
56543
+
Leu
CAG
[ENA]
¡û
>W1810487210
QAYK01000004
Alphaproteobacteria
Methylobacterium sp. GV104 [QAYK]
178382
178298
-
Leu
CAG
[ENA]
¡û
>W1810658557
QJJJ01000020
Alphaproteobacteria
Methylobacterium sp. B4 [QJJJ]
61208
61292
+
Leu
CAG
[ENA]
¡û
>W1810672706
QJTP01000004
Alphaproteobacteria
Methylobacterium sp. GV094 [QJTP]
178382
178298
-
Leu
CAG
[ENA]
¡û
>SRA1015851
SRR023846.227895
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
139
223
+
Leu
CAG
[SRA]
>C161004977
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
4731443
4731527
+
Leu
CAG
[Ensembl]
¡û
>W121010699
AGJK01000212
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
3002
3086
+
Leu
CAG
[ENA]
¡û
>W121081136
AKFK01000079
Alphaproteobacteria
Methylobacterium sp. GXF4 [AKFK]
179581
179665
+
Leu
CAG
[ENA]
¡û
>W1610679904
LKKO01000039
Alphaproteobacteria
Methylobacterium sp. GXS13 [LKKO]
43602
43686
+
Leu
CAG
[ENA]
¡û
>W1610735046
LMME01000014
Alphaproteobacteria
Methylobacterium sp. Leaf85 [LMME]
19141
19225
+
Leu
CAG
[ENA]
¡û
>W1610735142
LMMG01000041
Alphaproteobacteria
Methylobacterium sp. Leaf86 [LMMG]
765724
765808
+
Leu
CAG
[ENA]
¡û
>W1610735244
LMMI01000060
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
204237
204321
+
Leu
CAG
[ENA]
¡û
>W1610735330
LMMK01000055
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
41395
41479
+
Leu
CAG
[ENA]
¡û
>W1610735369
LMML01000030
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
42758
42842
+
Leu
CAG
[ENA]
¡û
>W1610735438
LMMN01000010
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
6559
6475
-
Leu
CAG
[ENA]
¡û
>W1610735515
LMMP01000001
Alphaproteobacteria
Methylobacterium sp. Leaf91 [LMMP]
65812
65728
-
Leu
CAG
[ENA]
¡û
>W1610735583
LMMQ01000023
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
25927
25843
-
Leu
CAG
[ENA]
¡û
>W1610735704
LMMS01000014
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
35035
34951
-
Leu
CAG
[ENA]
¡û
>W1610735784
LMMU01000001
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
676440
676524
+
Leu
CAG
[ENA]
¡û
>W1610735909
LMMW01000034
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
200711
200795
+
Leu
CAG
[ENA]
¡û
>W1610735949
LMMX01000023
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
17819
17735
-
Leu
CAG
[ENA]
¡û
>W1610736059
LMMZ01000039
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
141146
141062
-
Leu
CAG
[ENA]
¡û
>W1610736147
LMNB01000023
Alphaproteobacteria
Methylobacterium sp. Leaf106 [LMNB]
56528
56444
-
Leu
CAG
[ENA]
¡û
>W1610736224
LMND01000008
Alphaproteobacteria
Methylobacterium sp. Leaf108 [LMND]
23823
23739
-
Leu
CAG
[ENA]
¡û
>W1610736285
LMNE01000045
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
61919
62003
+
Leu
CAG
[ENA]
¡û
>W1610736362
LMNG01000015
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
33234
33150
-
Leu
CAG
[ENA]
¡û
>W1610736492
LMNJ01000006
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
44536
44620
+
Leu
CAG
[ENA]
¡û
>W1610736614
LMNL01000034
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
86437
86353
-
Leu
CAG
[ENA]
¡û
>W1610736677
LMNN01000001
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
39736
39652
-
Leu
CAG
[ENA]
¡û
>W1610736783
LMNP01000024
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
26574
26490
-
Leu
CAG
[ENA]
¡û
>W1610736823
LMNQ01000007
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
85569
85485
-
Leu
CAG
[ENA]
¡û
>W1610736921
LMNS01000023
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
9498
9414
-
Leu
CAG
[ENA]
¡û
>W1610737020
LMNU01000045
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
148941
148857
-
Leu
CAG
[ENA]
¡û
>W1610740152
LMQK01000030
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
285012
284928
-
Leu
CAG
[ENA]
¡û
>W1610740620
LMQV01000001
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
490827
490911
+
Leu
CAG
[ENA]
¡û
>W1610740875
LMRA01000011
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
2908
2824
-
Leu
CAG
[ENA]
¡û
>W1610740963
LMRC01000007
Alphaproteobacteria
Methylobacterium sp. Leaf466 [LMRC]
11413
11329
-
Leu
CAG
[ENA]
¡û
>W1610741070
LMRE01000034
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
12972
12888
-
Leu
CAG
[ENA]
¡û
>W1610741537
LMRM01000020
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
2190
2106
-
Leu
CAG
[ENA]
¡û
>W1710563200
FOPM01000027
Alphaproteobacteria
Methylobacterium gossipiicola [FOPM]
30703
30619
-
Leu
CAG
[ENA]
¡û
>W1710564964
FOQW01000008
Alphaproteobacteria
Methylobacterium brachiatum [FOQW]
260176
260260
+
Leu
CAG
[ENA]
¡û
>W1710568246
FOTK01000025
Alphaproteobacteria
Methylobacterium pseudosasicola [FOTK]
57114
57198
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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