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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180442 (107 seq.)
>W1710792808
LJOP01000092
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
14887
14814
-
Pro
CGG
[ENA]
¡û
>W1710792824
LJOQ01000032
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
28973
29046
+
Pro
CGG
[ENA]
¡û
>W1710792860
LJOS01000004
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
133438
133511
+
Pro
CGG
[ENA]
¡û
>W1710792952
LJOV01000055
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
10370
10443
+
Pro
CGG
[ENA]
¡û
>W1710792989
LJOW01000003
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
59139
59212
+
Pro
CGG
[ENA]
¡û
>W1710793078
LJOX01000056
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
5471
5398
-
Pro
CGG
[ENA]
¡û
>W1710793126
LJOY01000060
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
6261
6188
-
Pro
CGG
[ENA]
¡û
>W1710882880
LMVE01000021
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
126977
127050
+
Pro
CGG
[ENA]
¡û
>W131036470
ALVR01000007
Cyanobacteriota
Spirulina subsalsa PCC 9445 [ALVR]
976664
976589
-
Pro
CGG
[ENA]
¡û
>W1711081238
LSSA01000208
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
9405
9332
-
Pro
CGG
[ENA]
¡û
>W1711092432
LTEC01000006
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
86580
86507
-
Pro
CGG
[ENA]
¡û
>W1711143892
LVHT01000005
Cyanobacteriota
Synechococcus sp. MIT S9504 [LVHT]
25533
25607
+
Pro
CGG
[ENA]
¡û
>W1711261758
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
369778
369851
+
Pro
CGG
[ENA]
¡û
>W1711283593
LZQD01000001
Cyanobacteriota
Trichormus sp. NMC-1 [LZQD]
997645
997718
+
Pro
CGG
[ENA]
¡û
>W1711335603
MBQX01000136
Cyanobacteriota
Cylindrospermopsis raciborskii CS-508 [MBQX]
10779
10852
+
Pro
CGG
[ENA]
¡û
>W1711666738
MRCF01000095
Cyanobacteriota
Scytonema sp. HK-05 [MRCF]
13382
13455
+
Pro
CGG
[ENA]
¡û
>W1711711340
MTAV01000129
Cyanobacteriota
Nostoc sp. T09 [MTAV]
26700
26773
+
Pro
CGG
[ENA]
¡û
>W1712002223
NEED01000015
Cyanobacteriota
unicellular cyanobacterium SU2 [NEED]
10719
10793
+
Pro
CGG
[ENA]
¡û
>W1712017625
NETF01000189
Cyanobacteriota
unicellular cyanobacterium SU3 [NETF]
30926
30999
+
Pro
CGG
[ENA]
¡û
>W131036537
ALVW01000008
Cyanobacteriota
Mastigocladopsis repens PCC 10914 [ALVW]
170717
170644
-
Pro
CGG
[ENA]
¡û
>W131089980
AOFE01000031
Cyanobacteriota
Nodularia spumigena CCY9414 [AOFE]
131575
131648
+
Pro
CGG
[ENA]
¡û
>W131110084
APIY01000046
Cyanobacteriota
Dolichospermum circinale AWQC131C [APIY]
26226
26299
+
Pro
CGG
[ENA]
¡û
>W131110151
APIZ01000269
Cyanobacteriota
Dolichospermum circinale AWQC310F [APIZ]
20140
20213
+
Pro
CGG
[ENA]
¡û
>W131166654
ARCP01000037
Cyanobacteriota
filamentous cyanobacterium ESFC-1 [ARCP]
244259
244332
+
Pro
CGG
[ENA]
¡û
>w021702
AAVW01000061
Cyanobacteriota
Nodularia spumigena CCY9414 [AAVW]
21457
21381
-
Pro
CGG
[ENA]
¡û
>w013552
AANO01000001
Cyanobacteriota
Synechococcus sp. WH 5701 [AANO]
314974
315050
+
Pro
CGG
[ENA]
¡û
>WENV180044854
MOXS02048329
[MOXS] marine metagenome; 60 m water sample filtered on 0.2 um supor filter
244
318
+
Pro
CGG
[ENA]
¢þ
>WENV180065388
MPLY02060109
[MPLY] marine metagenome; 140 m water sample filtered on 0.2 um supor filter
2404
2477
+
Pro
CGG
[ENA]
¢þ
>WENV180086310
MPMD02452434
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
82
155
+
Pro
CGG
[ENA]
¢þ
>W141022910
AJWF01000009
Cyanobacteriota
Anabaena sp. PCC 7108 [AJWF]
1520119
1520192
+
Pro
CGG
[ENA]
¡û
>WENV180363895
OBNZ01019736
[OBNZ] marine metagenome; ENVO:00002010
584
511
-
Pro
CGG
[ENA]
¢þ
>w002286
AAAY02000045
Cyanobacteriota
Nostoc punctiforme [AAAY]
19075
18999
-
Pro
CGG
[ENA]
¡û
>W141038404
ALVU02000001
Cyanobacteriota
Synechocystis sp. PCC 7509 [ALVU]
3384701
3384775
+
Pro
CGG
[ENA]
¡û
>W141038774
ALWD01000150
Cyanobacteriota
[Scytonema hofmanni] UTEX B 1581 UTEX 2349 [ALWD]
32279
32352
+
Pro
CGG
[ENA]
¡û
>WENV181377490
OFRA01012917
[OFRA] wastewater metagenome; Lake Maggiore Verbania
472
546
+
Pro
CGG
[ENA]
¢þ
>WENV181852809
OGWH01004003
[OGWH] freshwater metagenome; freshwater
1643
1570
-
Pro
CGG
[ENA]
¢þ
>WENV181852954
OGWH01013102
[OGWH] freshwater metagenome; freshwater
69
142
+
Pro
CGG
[ENA]
¢þ
>W141221435
AZYY01000221
Cyanobacteriota
Aphanizomenon flos-aquae NIES-81 [AZYY]
14186
14259
+
Pro
CGG
[ENA]
¡û
>C08006953
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
1175844
1175771
-
Pro
CGG
[Ensembl]
¡û
>WENV170162749
CEOM01060319
[CEOM] marine metagenome genome assembly TARA_004_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
227
300
+
Pro
CGG
[ENA]
¢þ
>WENV170267561
CERG01009528
[CERG] marine metagenome genome assembly TARA_068_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
799
872
+
Pro
CGG
[ENA]
¢þ
>WENV171003083
NNBT01000278
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
232
159
-
Pro
CGG
[ENA]
¢þ
>WENV171003126
NNBT01001550
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
1574
1501
-
Pro
CGG
[ENA]
¢þ
>WENV171003426
NNBU01000009
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
165571
165644
+
Pro
CGG
[ENA]
¢þ
>WENV171003697
NNBV01000280
[NNBV] plant metagenome; symbiotic tissue sample KVS11
1909
1982
+
Pro
CGG
[ENA]
¢þ
>C181043626
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
4997311
4997384
+
Pro
CGG
-
¡û
>C181105218
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
568577
568650
+
Pro
CGG
-
¡û
>C181137749
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
5057745
5057672
-
Pro
CGG
-
¡û
>C181137854
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
2393766
2393693
-
Pro
CGG
-
¡û
>C191083065
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
2350739
2350666
-
Pro
CGG
-
¡û
>W09125756
ACIR01000063
Cyanobacteriota
Trichormus azollae 708 [ACIR]
14716
14789
+
Pro
CGG
[ENA]
¡û
>W1910020534
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
1866544
1866471
-
Pro
CGG
[ENA]
¡û
>W1910175562
BJCF01000046
Cyanobacteriota
Dolichospermum planctonicum NIES-80 [BJCF]
14571
14498
-
Pro
CGG
[ENA]
¡û
>W1910646639
LWSY01000001
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
65047
65120
+
Pro
CGG
[ENA]
¡û
>W1910792688
MRBZ01000098
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
13697
13770
+
Pro
CGG
[ENA]
¡û
>W1910943191
NJHS01000321
Cyanobacteriota
Cylindrospermopsis raciborskii C07 [NJHS]
61260
61187
-
Pro
CGG
[ENA]
¡û
>W1910943230
NJHT01000324
Cyanobacteriota
Cylindrospermopsis raciborskii C04 [NJHT]
15902
15975
+
Pro
CGG
[ENA]
¡û
>W1910943264
NJHU01000164
Cyanobacteriota
Cylindrospermopsis raciborskii C03 [NJHU]
61254
61181
-
Pro
CGG
[ENA]
¡û
>W1910943294
NJHV01000175
Cyanobacteriota
Cylindrospermopsis raciborskii S14 [NJHV]
67567
67640
+
Pro
CGG
[ENA]
¡û
>W1910943326
NJHW01000029
Cyanobacteriota
Cylindrospermopsis raciborskii S10 [NJHW]
80955
80882
-
Pro
CGG
[ENA]
¡û
>W1910943393
NJHX01000417
Cyanobacteriota
Cylindrospermopsis raciborskii S07 [NJHX]
81107
81034
-
Pro
CGG
[ENA]
¡û
>W1910943405
NJHY01000012
Cyanobacteriota
Cylindrospermopsis raciborskii S06 [NJHY]
67544
67617
+
Pro
CGG
[ENA]
¡û
>W1910943454
NJHZ01000036
Cyanobacteriota
Cylindrospermopsis raciborskii S05 [NJHZ]
81127
81054
-
Pro
CGG
[ENA]
¡û
>W1910943500
NJIA01000080
Cyanobacteriota
Cylindrospermopsis raciborskii S01 [NJIA]
81128
81055
-
Pro
CGG
[ENA]
¡û
>W1911118695
NOLI01000128
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
6170
6097
-
Pro
CGG
[ENA]
¡û
>W1911118742
NOLJ01000003
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
361248
361175
-
Pro
CGG
[ENA]
¡û
>W1911118852
NOLK01000171
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
6824
6751
-
Pro
CGG
[ENA]
¡û
>W1911176869
NQKW01000006
Cyanobacteriota
Synechococcus sp. 1G10 [NQKW]
135300
135226
-
Pro
CGG
[ENA]
¡û
>W1911176959
NQKY01000014
Cyanobacteriota
Synechococcus sp. BO 8801 [NQKY]
28989
29064
+
Pro
CGG
[ENA]
¡û
>W1911244285
NSHF01000481
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
758
831
+
Pro
CGG
[ENA]
¡û
>W1810355671
PVMC01000069
Cyanobacteriota
Cylindrospermopsis raciborskii Cr2010 [PVMC]
20595
20668
+
Pro
CGG
[ENA]
¡û
>W1810528079
QCSJ01000028
Cyanobacteriota
Synechococcus sp. AG-670-A05 [QCSJ]
4388
4315
-
Pro
CGG
[ENA]
¡û
>W1810529299
QCUI01000047
Cyanobacteriota
Synechococcus sp. AG-679-A04 [QCUI]
15993
16067
+
Pro
CGG
[ENA]
¡û
>C151000962
AP012549
Cyanobacteriota
cyanobacterium endosymbiont of Epithemia turgida isolate EtSB Lake [AP012549]
1988859
1988786
-
Pro
CGG
[Ensembl]
¡û
>C151004166
CP003284
Cyanobacteriota
Anabaena sp. 90 [CP003284, CP003285]
2665979
2666052
+
Pro
CGG
[Ensembl]
¡û
>C151082964
CP011456
Cyanobacteriota
Anabaena sp. WA102 [CP011456]
4707988
4707915
-
Pro
CGG
-
¡û
>SRA1031195
SRR035087.389446
454 Sequencing (SRP001808)
271
198
-
Pro
CGG
[SRA]
>SRA1031740
SRR035087.479479
454 Sequencing (SRP001808)
118
45
-
Pro
CGG
[SRA]
>W10106033
ACYA01000039
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
80812
80739
-
Pro
CGG
[ENA]
¡û
>W11108356
ACYA01000039
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
80812
80739
-
Pro
CGG
[ENA]
¡û
>C11115531
CP002059
Cyanobacteriota
Nostoc azollae' 0708 [CP002059]
595643
595716
+
Pro
CGG
[Ensembl]
¡û
>W1511364912
JSDP01000225
Cyanobacteriota
Aphanizomenon flos-aquae 2012/KM1/D3 [JSDP]
13473
13546
+
Pro
CGG
[ENA]
¡û
>C161005332
CP007203
Cyanobacteriota
Nodularia spumigena CCY9414 [CP007203]
2284483
2284556
+
Pro
CGG
[Ensembl]
¡û
>W1610084858
CDHJ01000097
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
1486
1413
-
Pro
CGG
[ENA]
¡û
>C131004721
CP003610
Cyanobacteriota
Calothrix sp. PCC 6303 [CP003610]
4397289
4397214
-
Pro
CGG
[Ensembl]
¡û
>C131004524
CP003597
Cyanobacteriota
Chroococcidiopsis thermalis PCC 7203 [CP003597]
6205958
6205885
-
Pro
CGG
[Ensembl]
¡û
>C131004672
CP003607
Cyanobacteriota
Oscillatoria acuminata PCC 6304 [CP003607]
5072481
5072554
+
Pro
CGG
[Ensembl]
¡û
>C131004915
CP003642
Cyanobacteriota
Cylindrospermum stagnale PCC 7417 [CP003642]
3943133
3943206
+
Pro
CGG
[Ensembl]
¡û
>C131005061
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
3312131
3312204
+
Pro
CGG
[Ensembl]
¡û
>W1610656733
LJOP01000092
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
14887
14814
-
Pro
CGG
[ENA]
¡û
>W1610656749
LJOQ01000032
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
28973
29046
+
Pro
CGG
[ENA]
¡û
>W1610656824
LJOS01000004
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
133438
133511
+
Pro
CGG
[ENA]
¡û
>W1610656895
LJOT01000282
Cyanobacteriota
Anabaena sp. CRKS33 [LJOT]
4691
4618
-
Pro
CGG
[ENA]
¡û
>W1610656896
LJOT01000310
Cyanobacteriota
Anabaena sp. CRKS33 [LJOT]
4132
4205
+
Pro
CGG
[ENA]
¡û
>W1610656956
LJOV01000055
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
10370
10443
+
Pro
CGG
[ENA]
¡û
>W1610656993
LJOW01000003
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
59139
59212
+
Pro
CGG
[ENA]
¡û
>W1610657082
LJOX01000056
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
5471
5398
-
Pro
CGG
[ENA]
¡û
>W1610657130
LJOY01000060
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
6261
6188
-
Pro
CGG
[ENA]
¡û
>W1610744806
LMVE01000021
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
126977
127050
+
Pro
CGG
[ENA]
¡û
>W1610926470
LTEC01000006
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
86580
86507
-
Pro
CGG
[ENA]
¡û
>W1610931025
LUFH01001270
Cyanobacteriota
Sphaerospermopsis aphanizomenoides BCCUSP55 [LUFH]
68
141
+
Pro
CGG
[ENA]
¡û
>W1610954900
LVHT01000005
Cyanobacteriota
Synechococcus sp. MIT S9504 [LVHT]
25533
25607
+
Pro
CGG
[ENA]
¡û
>W1610979383
LWAJ01000065
Cyanobacteriota
Nodularia spumigena CENA596 [LWAJ]
7075
7148
+
Pro
CGG
[ENA]
¡û
>W1611023733
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
369778
369851
+
Pro
CGG
[ENA]
¡û
>W1710005641
ALVQ01000010
Cyanobacteriota
Spirulina major PCC 6313 [ALVQ]
127872
127797
-
Pro
CGG
[ENA]
¡û
>W1710088004
BDUB01000001
Cyanobacteriota
Nodularia sp. NIES-3585 [BDUB]
442810
442737
-
Pro
CGG
[ENA]
¡û
>W1710089720
CDHJ01000097
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
1486
1413
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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