This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180462 (39 seq.)
>W1710906989
LNOL01000023
Betaproteobacteria
Alcaligenes faecalis [LNOL]
9698
9782
+
Leu
CAG
[ENA]
¡û
>W1710995922
LQAS01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
3949
3865
-
Leu
CAG
[ENA]
¡û
>W1711710488
MSZN01000003
Betaproteobacteria
Alcaligenes faecalis [MSZN]
197796
197712
-
Leu
CAG
[ENA]
¡û
>W1711710489
MSZN01000003
Betaproteobacteria
Alcaligenes faecalis [MSZN]
186887
186803
-
Leu
CAG
[ENA]
¡û
>W1711710538
MSZO01000003
Betaproteobacteria
Alcaligenes faecalis [MSZO]
143315
143399
+
Leu
CAG
[ENA]
¡û
>W1711710539
MSZO01000003
Betaproteobacteria
Alcaligenes faecalis [MSZO]
154224
154308
+
Leu
CAG
[ENA]
¡û
>W1711710587
MSZP01000001
Betaproteobacteria
Alcaligenes faecalis [MSZP]
202800
202716
-
Leu
CAG
[ENA]
¡û
>W1711710588
MSZP01000001
Betaproteobacteria
Alcaligenes faecalis [MSZP]
192047
191963
-
Leu
CAG
[ENA]
¡û
>W1711710654
MSZQ01000006
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
183846
183762
-
Leu
CAG
[ENA]
¡û
>W1711710655
MSZQ01000006
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
173093
173009
-
Leu
CAG
[ENA]
¡û
>W1711710721
MSZR01000017
Betaproteobacteria
Alcaligenes faecalis [MSZR]
107190
107106
-
Leu
CAG
[ENA]
¡û
>W1711710722
MSZR01000017
Betaproteobacteria
Alcaligenes faecalis [MSZR]
96437
96353
-
Leu
CAG
[ENA]
¡û
>W1711711874
MTBI01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
718985
718901
-
Leu
CAG
[ENA]
¡û
>C171115506
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
2342594
2342678
+
Leu
CAG
-
¡û
>W131051771
AMXV01000024
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
35220
35136
-
Leu
CAG
[ENA]
¡û
>W131223058
AUBT01000005
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
258923
259007
+
Leu
CAG
[ENA]
¡û
>W141104409
AVOG02000001
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
117873
117789
-
Leu
CAG
[ENA]
¡û
>W141237700
BBJQ01000001
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
758136
758220
+
Leu
CAG
[ENA]
¡û
>WENV183739613
PJUE01040652
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
207
291
+
Leu
CAG
[ENA]
¢þ
>WENV183741226
PJUF01060611
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
134
50
-
Leu
CAG
[ENA]
¢þ
>WENV183746394
POVV01038800
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
419
335
-
Leu
CAG
[ENA]
¢þ
>WENV170654959
JTFN01000255
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
1458
1374
-
Leu
CAG
[ENA]
¢þ
>WENV170656843
JTFO01051362
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
107
23
-
Leu
CAG
[ENA]
¢þ
>WENV170657490
JTFO01168016
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
286
202
-
Leu
CAG
[ENA]
¢þ
>C181088583
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
2116517
2116601
+
Leu
CAG
-
¡û
>C191085283
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
2671199
2671115
-
Leu
CAG
-
¡û
>C191091134
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
996707
996791
+
Leu
CAG
-
¡û
>C191113950
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
3391181
3391265
+
Leu
CAG
-
¡û
>C191149620
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
296007
296091
+
Leu
CAG
-
¡û
>W1810583874
QEXO01000001
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
758129
758045
-
Leu
CAG
[ENA]
¡û
>W1511321044
JQCV01000007
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
111055
110971
-
Leu
CAG
[ENA]
¡û
>W1511537444
JZBR01000002
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
346189
346273
+
Leu
CAG
[ENA]
¡û
>C161051331
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
346189
346273
+
Leu
CAG
[Ensembl]
¡û
>W121091191
AKMR01000001
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
180424
180340
-
Leu
CAG
[ENA]
¡û
>W1610093559
CYTB01000003
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
434240
434156
-
Leu
CAG
[ENA]
¡û
>W1610766003
LNOL01000023
Betaproteobacteria
Alcaligenes faecalis [LNOL]
9698
9782
+
Leu
CAG
[ENA]
¡û
>W1610850579
LQAS01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
3949
3865
-
Leu
CAG
[ENA]
¡û
>W1610921519
LSUO01000014
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
343971
344055
+
Leu
CAG
[ENA]
¡û
>W1710082510
BDHG01000001
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
197807
197723
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK