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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180479 (96 seq.)
>W1710925474
LODI01000025
Gammaproteobacteria
Pseudoalteromonas sp. H71 [LODI]
612
528
-
Leu
CAA
[ENA]
¡û
>W1710925593
LODJ01000010
Gammaproteobacteria
Pseudoalteromonas sp. 13-15 [LODJ]
36201
36285
+
Leu
CAA
[ENA]
¡û
>W1710925612
LODK01000007
Gammaproteobacteria
Pseudoalteromonas sp. H100 [LODK]
35943
36027
+
Leu
CAA
[ENA]
¡û
>W1710927298
LOFI01000011
Gammaproteobacteria
Pseudoalteromonas sp. 10-33 [LOFI]
12234
12150
-
Leu
CAA
[ENA]
¡û
>W1711724356
MTQD01000001
Gammaproteobacteria
Pseudoalteromonas sp. EB27 [MTQD]
333748
333832
+
Leu
CAA
[ENA]
¡û
>W131051913
AMYA01000018
Gammaproteobacteria
Pseudoalteromonas sp. Bsw20308 [AMYA]
69070
68986
-
Leu
CAA
[ENA]
¡û
>WENV013936
AACY020385024
Marine microbial communities from Global Ocean Sampling (GOS)
645
731
+
Leu
CAA
[ENA]
>w021534
AAVS01000020
Gammaproteobacteria
Alteromonadales bacterium TW-7 [AAVS]
44508
44422
-
Leu
CAA
[ENA]
¡û
>W141086553
AUTI01000364
Gammaproteobacteria
Pseudoalteromonas sp. TB25 TB25 [AUTI]
8755
8671
-
Leu
CAA
[ENA]
¡û
>W141086621
AUTJ01000130
Gammaproteobacteria
Pseudoalteromonas sp. TB13 TB13 [AUTJ]
26362
26446
+
Leu
CAA
[ENA]
¡û
>W141086691
AUTK01000277
Gammaproteobacteria
Pseudoalteromonas sp. AC163 AC163 [AUTK]
8759
8675
-
Leu
CAA
[ENA]
¡û
>W141086829
AUTL01000231
Gammaproteobacteria
Pseudoalteromonas sp. TAE79 TAE79 [AUTL]
11735
11819
+
Leu
CAA
[ENA]
¡û
>W141086864
AUTM01000070
Gammaproteobacteria
Pseudoalteromonas sp. TAE80 TAE80 [AUTM]
4127
4043
-
Leu
CAA
[ENA]
¡û
>W141086985
AUTN01000080
Gammaproteobacteria
Pseudoalteromonas sp. TAE56 TAE56 [AUTN]
13843
13759
-
Leu
CAA
[ENA]
¡û
>W141087203
AUTP01000316
Gammaproteobacteria
Pseudoalteromonas sp. TAB23 TAB23 [AUTP]
8342
8426
+
Leu
CAA
[ENA]
¡û
>W141087295
AUTQ01000194
Gammaproteobacteria
Pseudoalteromonas sp. TB64 TB64 [AUTQ]
40940
41024
+
Leu
CAA
[ENA]
¡û
>W141087353
AUTR01000027
Gammaproteobacteria
Pseudoalteromonas sp. S8-8 [AUTR]
96387
96303
-
Leu
CAA
[ENA]
¡û
>W141087464
AUTS01000019
Gammaproteobacteria
Pseudoalteromonas sp. S8-38 [AUTS]
23405
23489
+
Leu
CAA
[ENA]
¡û
>WENV182542502
OJAY01005130
[OJAY] seawater metagenome; Sea water
1561
1645
+
Leu
CAA
[ENA]
¢þ
>WENV182542729
OJAZ01001214
[OJAZ] seawater metagenome; Sea water
4105
4189
+
Leu
CAA
[ENA]
¢þ
>WENV182543714
OJBC01000597
[OJBC] seawater metagenome; Sea water
6835
6919
+
Leu
CAA
[ENA]
¢þ
>WENV182543722
OJBC01000677
[OJBC] seawater metagenome; Sea water
8683
8767
+
Leu
CAA
[ENA]
¢þ
>WENV182544697
OJBJ01000010
[OJBJ] seawater metagenome; Sea water
13184
13100
-
Leu
CAA
[ENA]
¢þ
>WENV182547311
OJBS01000262
[OJBS] seawater metagenome; Sea water
10546
10630
+
Leu
CAA
[ENA]
¢þ
>WENV182550147
OJBZ01005433
[OJBZ] seawater metagenome; Sea water
1022
938
-
Leu
CAA
[ENA]
¢þ
>WENV182552494
OJCK01000627
[OJCK] seawater metagenome; Sea water
91
7
-
Leu
CAA
[ENA]
¢þ
>WENV182554641
OJCW01000317
[OJCW] seawater metagenome; Sea water
5483
5567
+
Leu
CAA
[ENA]
¢þ
>WENV182554677
OJCW01001041
[OJCW] seawater metagenome; Sea water
1507
1591
+
Leu
CAA
[ENA]
¢þ
>WENV182557055
OJDI01000575
[OJDI] seawater metagenome; Sea water
6585
6669
+
Leu
CAA
[ENA]
¢þ
>WENV182557592
OJDK01000525
[OJDK] seawater metagenome; Sea water
3525
3441
-
Leu
CAA
[ENA]
¢þ
>WENV182557847
OJDL01000162
[OJDL] seawater metagenome; Sea water
18669
18753
+
Leu
CAA
[ENA]
¢þ
>WENV182558786
OJDN01003355
[OJDN] seawater metagenome; Sea water
91
7
-
Leu
CAA
[ENA]
¢þ
>WENV182559025
OJDO01000021
[OJDO] seawater metagenome; Sea water
30685
30769
+
Leu
CAA
[ENA]
¢þ
>WENV182559055
OJDO01000203
[OJDO] seawater metagenome; Sea water
12565
12481
-
Leu
CAA
[ENA]
¢þ
>WENV182559762
OJDQ01003289
[OJDQ] seawater metagenome; Sea water
277
361
+
Leu
CAA
[ENA]
¢þ
>WENV182562405
OJDZ01002261
[OJDZ] seawater metagenome; Sea water
3508
3424
-
Leu
CAA
[ENA]
¢þ
>WENV182565369
OJEH01003457
[OJEH] seawater metagenome; Sea water
797
713
-
Leu
CAA
[ENA]
¢þ
>WENV182565821
OJEI01000012
[OJEI] seawater metagenome; Sea water
27074
27158
+
Leu
CAA
[ENA]
¢þ
>WENV182565883
OJEI01000735
[OJEI] seawater metagenome; Sea water
973
1057
+
Leu
CAA
[ENA]
¢þ
>WENV182566129
OJEJ01000125
[OJEJ] seawater metagenome; Sea water
36417
36501
+
Leu
CAA
[ENA]
¢þ
>WENV182567153
OJEN01005953
[OJEN] seawater metagenome; Sea water
1459
1543
+
Leu
CAA
[ENA]
¢þ
>WENV182567554
OJEO01006630
[OJEO] seawater metagenome; Sea water
425
341
-
Leu
CAA
[ENA]
¢þ
>WENV182567764
OJEP01000164
[OJEP] seawater metagenome; Sea water
20401
20485
+
Leu
CAA
[ENA]
¢þ
>WENV182568627
OJEW01000046
[OJEW] seawater metagenome; Sea water
12265
12181
-
Leu
CAA
[ENA]
¢þ
>WENV182572540
OJFL01019920
[OJFL] seawater metagenome; Sea water
227
143
-
Leu
CAA
[ENA]
¢þ
>WENV182575119
OJFU01000019
[OJFU] seawater metagenome; Sea water
18102
18018
-
Leu
CAA
[ENA]
¢þ
>WENV182575239
OJFU01001866
[OJFU] seawater metagenome; Sea water
1086
1170
+
Leu
CAA
[ENA]
¢þ
>WENV182577012
OJGC01000410
[OJGC] seawater metagenome; Sea water
3256
3340
+
Leu
CAA
[ENA]
¢þ
>WENV182577015
OJGC01000445
[OJGC] seawater metagenome; Sea water
4895
4811
-
Leu
CAA
[ENA]
¢þ
>WENV182577650
OJGH01000238
[OJGH] seawater metagenome; Sea water
3188
3272
+
Leu
CAA
[ENA]
¢þ
>WENV182585358
OJHH01011250
[OJHH] seawater metagenome; Sea water
619
535
-
Leu
CAA
[ENA]
¢þ
>WENV182588009
OJHO01000784
[OJHO] seawater metagenome; Sea water
190
274
+
Leu
CAA
[ENA]
¢þ
>WENV182588829
OJHY01000276
[OJHY] seawater metagenome; Sea water
4643
4559
-
Leu
CAA
[ENA]
¢þ
>WENV182590782
OJIK01000544
[OJIK] seawater metagenome; Sea water
4187
4103
-
Leu
CAA
[ENA]
¢þ
>WENV182592023
OJIO01046162
[OJIO] seawater metagenome; Sea water
216
132
-
Leu
CAA
[ENA]
¢þ
>WENV182594415
OJIV01009207
[OJIV] seawater metagenome; Sea water
187
271
+
Leu
CAA
[ENA]
¢þ
>WENV183054817
OLGU01005137
[OLGU] seawater metagenome; Sea water
74
158
+
Leu
CAA
[ENA]
¢þ
>WENV183055142
OLGX01000016
[OLGX] seawater metagenome; Sea water
78454
78538
+
Leu
CAA
[ENA]
¢þ
>WENV183057072
OLHK01001798
[OLHK] seawater metagenome; Sea water
4056
4140
+
Leu
CAA
[ENA]
¢þ
>WENV183057663
OLHM01000312
[OLHM] seawater metagenome; Sea water
5483
5567
+
Leu
CAA
[ENA]
¢þ
>WENV183057696
OLHM01000872
[OLHM] seawater metagenome; Sea water
3411
3495
+
Leu
CAA
[ENA]
¢þ
>WENV183057957
OLHN01000117
[OLHN] seawater metagenome; Sea water
4853
4769
-
Leu
CAA
[ENA]
¢þ
>WENV183057979
OLHN01000353
[OLHN] seawater metagenome; Sea water
12894
12810
-
Leu
CAA
[ENA]
¢þ
>WENV183059842
OLHV01012963
[OLHV] seawater metagenome; Sea water
316
400
+
Leu
CAA
[ENA]
¢þ
>WENV183061371
OLHZ01005400
[OLHZ] seawater metagenome; Sea water
958
1042
+
Leu
CAA
[ENA]
¢þ
>WENV170305691
CESI01165498
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
304
388
+
Leu
CAA
[ENA]
¢þ
>WENV170326483
CESU01004103
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
230
146
-
Leu
CAA
[ENA]
¢þ
>WENV170673073
LAZR01005657
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
5092
5008
-
Leu
CAA
[ENA]
¢þ
>WENV170921055
MDTG01007382
[MDTG] marine metagenome; seawater
1718
1802
+
Leu
CAA
[ENA]
¢þ
>C181010207
CP011025
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [CP011025, CP011026]
806847
806763
-
Leu
CAA
-
¡û
>C181010408
CP011030
Gammaproteobacteria
Pseudoalteromonas issachenkonii KMM 3549 [CP011030, CP011031]
654303
654219
-
Leu
CAA
-
¡û
>C181012580
CP012737
Gammaproteobacteria
Pseudoalteromonas sp. 1_2015MBL_MicDiv [CP012737, CP012738]
3066725
3066641
-
Leu
CAA
-
¡û
>C181036699
CP019162
Gammaproteobacteria
Pseudoalteromonas sp. 13-15 [CP019162, CP019163]
1817199
1817115
-
Leu
CAA
-
¡û
>C181084454
CP023558
Gammaproteobacteria
Pseudoalteromonas marina ECSMB14103 [CP023558]
684694
684778
+
Leu
CAA
-
¡û
>C191179370
CP040558
Gammaproteobacteria
Pseudoalteromonas distincta 16-SW-7 [CP040558]
473101
473017
-
Leu
CAA
-
¡û
>W141621750
JJNY01000007
Gammaproteobacteria
Pseudoalteromonas sp. S3431 [JJNY]
70912
70828
-
Leu
CAA
[ENA]
¡û
>W141621905
JJNZ01000068
Gammaproteobacteria
Pseudoalteromonas fuliginea citrea [JJNZ]
21281
21365
+
Leu
CAA
[ENA]
¡û
>W1810155660
PJAV01000153
Gammaproteobacteria
Pseudoalteromonas sp. 78C3 [PJAV]
8814
8730
-
Leu
CAA
[ENA]
¡û
>W1810156615
PJBK01000086
Gammaproteobacteria
Pseudoalteromonas sp. GutCa3 [PJBK]
12985
13069
+
Leu
CAA
[ENA]
¡û
>W1810157005
PJBQ01000046
Gammaproteobacteria
Pseudoalteromonas arctica MelAa3 [PJBQ]
37138
37054
-
Leu
CAA
[ENA]
¡û
>W1810157080
PJBR01000012
Gammaproteobacteria
Pseudoalteromonas sp. MelDa3 [PJBR]
45559
45643
+
Leu
CAA
[ENA]
¡û
>W1511399053
JTDZ01000012
Gammaproteobacteria
Pseudoalteromonas elyakovii NCIMB 2033 = ATCC BAA-314 [JTDZ]
237502
237586
+
Leu
CAA
[ENA]
¡û
>W11121957
ADOP01000002
Gammaproteobacteria
Pseudoalteromonas distincta ANT/505 [ADOP]
140271
140187
-
Leu
CAA
[ENA]
¡û
>W1511478093
JWGY01000014
Gammaproteobacteria
Pseudoalteromonas sp. ECSMB14103 [JWGY]
73501
73417
-
Leu
CAA
[ENA]
¡û
>W1511479522
JWIG01000001
Gammaproteobacteria
Pseudoalteromonas distincta ATCC 700518 [JWIG]
493188
493272
+
Leu
CAA
[ENA]
¡û
>W1511518624
JXYD01000074
Gammaproteobacteria
Pseudoalteromonas fuliginea S2292 [JXYD]
13922
14006
+
Leu
CAA
[ENA]
¡û
>C161051935
CP013138
Gammaproteobacteria
Pseudoalteromonas sp. Bsw20308 BSW20308 [CP013138]
936050
936134
+
Leu
CAA
-
¡û
>C161055848
CP013350
Gammaproteobacteria
Pseudoalteromonas issachenkonii KCTC 12958 [CP013350, CP013351]
653102
653018
-
Leu
CAA
[Ensembl]
¡û
>W121024734
AHBY01000003
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [AHBY]
31530
31446
-
Leu
CAA
[ENA]
¡û
>W121025135
AHCB01000013
Gammaproteobacteria
Pseudoalteromonas marina mano4 [AHCB]
68176
68092
-
Leu
CAA
[ENA]
¡û
>W121123348
BADY01000045
Gammaproteobacteria
Pseudoalteromonas sp. BSi20495 [BADY]
7270
7186
-
Leu
CAA
[ENA]
¡û
>W1610783120
LODI01000025
Gammaproteobacteria
Pseudoalteromonas sp. H71 [LODI]
612
528
-
Leu
CAA
[ENA]
¡û
>W1610783239
LODJ01000010
Gammaproteobacteria
Pseudoalteromonas sp. 13-15 [LODJ]
36201
36285
+
Leu
CAA
[ENA]
¡û
>W1610783258
LODK01000007
Gammaproteobacteria
Pseudoalteromonas sp. H100 [LODK]
35943
36027
+
Leu
CAA
[ENA]
¡û
>W1610784840
LOFI01000011
Gammaproteobacteria
Pseudoalteromonas sp. 10-33 [LOFI]
12234
12150
-
Leu
CAA
[ENA]
¡û
>W1710594373
FSRF01000001
Gammaproteobacteria
Pseudoalteromonas marina 13-15 [FSRF]
1817199
1817115
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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