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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180507 (69 seq.)
>W1710785421
LJHV01000012
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
32272
32188
-
Leu
TAG
[ENA]
¡û
>W1710857346
LMAF01000002
Alphaproteobacteria
Erythrobacter sp. YT30 [LMAF]
1874963
1875047
+
Leu
TAG
[ENA]
¡û
>W1711055213
LRUK01000028
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
22904
22820
-
Leu
TAG
[ENA]
¡û
>W1711075227
LSKF01000113
Alphaproteobacteria
Erythrobacteraceae bacterium CCH12-C2 [LSKF]
14220
14304
+
Leu
TAG
[ENA]
¡û
>W1711089869
LTAB01000001
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
626542
626458
-
Leu
TAG
[ENA]
¡û
>W1711250009
LYMJ01000001
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
452593
452509
-
Leu
TAG
[ENA]
¡û
>W1711292834
LZYB01000003
Alphaproteobacteria
Erythrobacter dokdonensis DSW-74 [LZYB]
450843
450927
+
Leu
TAG
[ENA]
¡û
>W1711385218
MEDW01000028
Alphaproteobacteria
Erythrobacter sp. SCN 62-14 [MEDW]
11406
11322
-
Leu
TAG
[ENA]
¡û
>W1711766328
MUYH01000003
Alphaproteobacteria
Erythrobacter sanguineus [MUYH]
118806
118890
+
Leu
TAG
[ENA]
¡û
>W1711766400
MUYI01000001
Alphaproteobacteria
Erythrobacter dokdonensis [MUYI]
103251
103167
-
Leu
TAG
[ENA]
¡û
>W1712076987
NGUN01000003
Alphaproteobacteria
Sphingobium sp. GW456-12-10-14-TSB1 [NGUN]
1738020
1737936
-
Leu
TAG
[ENA]
¡û
>W1712084216
NHRH01000058
Alphaproteobacteria
Sphingomonas sp. CDS-1 [NHRH]
8958
9042
+
Leu
TAG
[ENA]
¡û
>C171019691
CP013070
Alphaproteobacteria
Sphingobium indicum B90A [CP013070]
1093016
1093100
+
Leu
TAG
-
¡û
>C171049874
CP016456
Alphaproteobacteria
Sphingobium sp. RAC03 [CP016456]
2587452
2587536
+
Leu
TAG
-
¡û
>W131196371
ASTG01000020
Alphaproteobacteria
Sphingobium bisphenolivorans YL23 [ASTG]
32135
32219
+
Leu
TAG
[ENA]
¡û
>W131224723
AUDA01000104
Alphaproteobacteria
Sphingobium indicum IP26 [AUDA]
47531
47447
-
Leu
TAG
[ENA]
¡û
>W131229848
AUHC01000004
Alphaproteobacteria
Erythrobacter cryptus DSM 12079 [AUHC]
90808
90892
+
Leu
TAG
[ENA]
¡û
>W131241144
BARE01000038
Alphaproteobacteria
Sphingobium xenophagum NBRC 107872 [BARE]
28907
28823
-
Leu
TAG
[ENA]
¡û
>W141076275
ATDO01000077
Alphaproteobacteria
Sphingobium sp. HDIP04 [ATDO]
39655
39739
+
Leu
TAG
[ENA]
¡û
>WENV181167715
OEIU01062634
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
643
727
+
Leu
TAG
[ENA]
¢þ
>WENV181223202
OFDC01003089
[OFDC] hot springs metagenome; Water
2956
3040
+
Leu
TAG
[ENA]
¢þ
>WENV181234624
OFEU01000685
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
1787
1703
-
Leu
TAG
[ENA]
¢þ
>W141231024
BATN01000035
Alphaproteobacteria
Sphingobium fuliginis KK22 [BATN]
39213
39297
+
Leu
TAG
[ENA]
¡û
>W141285077
JANF02000046
Alphaproteobacteria
Sphingobium indicum F2 [JANF]
40277
40193
-
Leu
TAG
[ENA]
¡û
>W141285089
JANF02000058
Alphaproteobacteria
Sphingobium indicum F2 [JANF]
42290
42374
+
Leu
TAG
[ENA]
¡û
>WENV170022597
BCQK01024345
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
506
590
+
Leu
TAG
[ENA]
¢þ
>WENV170136551
CENV01047713
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
422
338
-
Leu
TAG
[ENA]
¢þ
>W141400562
JDRU02000873
Alphaproteobacteria
Sphingomonas sp. BHC-A [JDRU]
1844
1928
+
Leu
TAG
[ENA]
¡û
>WENV170668334
LADL02003009
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
6611
6527
-
Leu
TAG
[ENA]
¢þ
>W141462274
JFHR01000001
Alphaproteobacteria
Sphingobium chlorophenolicum [JFHR]
67575
67659
+
Leu
TAG
[ENA]
¡û
>WENV171002994
NKIC01002171
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
728
812
+
Leu
TAG
[ENA]
¢þ
>C181072126
CP022745
Alphaproteobacteria
Sphingobium xenophagum C1 [CP022745, CP022746]
142881
142797
-
Leu
TAG
-
¡û
>C191185559
CP041016
Alphaproteobacteria
Sphingobium fuliginis ATCC 27551 [CP041016, CP041017]
1885840
1885756
-
Leu
TAG
-
¡û
>C191188818
CP041222
Alphaproteobacteria
Porphyrobacter sp. YT40 [CP041222]
1456510
1456594
+
Leu
TAG
-
¡û
>W141700079
JMIV01000001
Alphaproteobacteria
Erythrobacter sp. JL475 [JMIV]
271539
271623
+
Leu
TAG
[ENA]
¡û
>W141700141
JMIW01000003
Alphaproteobacteria
Erythrobacter longus [JMIW]
287282
287366
+
Leu
TAG
[ENA]
¡û
>W141808051
JPPQ01000069
Alphaproteobacteria
Sphingobium sp. ba1 [JPPQ]
1266987
1266903
-
Leu
TAG
[ENA]
¡û
>W141820303
JQMU01000001
Alphaproteobacteria
Porphyrobacter sp. HL-46 [JQMU]
1957690
1957774
+
Leu
TAG
[ENA]
¡û
>W1910006995
BBQY01000004
Alphaproteobacteria
Sphingobium xenophagum OW59 [BBQY]
401386
401470
+
Leu
TAG
[ENA]
¡û
>W1910649299
LXYF01000041
Alphaproteobacteria
Sphingobium sp. SA916 [LXYF]
164219
164135
-
Leu
TAG
[ENA]
¡û
>W1910744285
MIAK01000002
Alphaproteobacteria
Sphingomonadales bacterium RIFCSPLOWO2_12_FULL_63_15 [MIAK]
42965
42881
-
Leu
TAG
[ENA]
¡û
>W1910889743
NETV01000001
Alphaproteobacteria
Sphingobium sp. LB126 [NETV]
23143
23059
-
Leu
TAG
[ENA]
¡û
>W1911075019
NMUA01000026
Alphaproteobacteria
Sphingobium sp. D43FB [NMUA]
47483
47399
-
Leu
TAG
[ENA]
¡û
>W1911746083
QVRA01000007
Alphaproteobacteria
Sphingobium terrigena EO9 [QVRA]
207091
207007
-
Leu
TAG
[ENA]
¡û
>W1810000455
BEWI01000031
Alphaproteobacteria
Sphingobium fuliginis OMI [BEWI]
564431
564515
+
Leu
TAG
[ENA]
¡û
>W1810400880
PYGL01000010
Alphaproteobacteria
Sphingobium sp. AEW4 [PYGL]
102968
103052
+
Leu
TAG
[ENA]
¡û
>C151074563
CP010954
Alphaproteobacteria
Sphingobium sp. YBL2 [CP010954]
4299476
4299392
-
Leu
TAG
[Ensembl]
¡û
>W10126758
AEDK01000001
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
645057
644973
-
Leu
TAG
[ENA]
¡û
>C10111686
AP010803
Alphaproteobacteria
Sphingobium indicum UT26S [AP010803, AP010804]
1959082
1958998
-
Leu
TAG
[Ensembl]
¡û
>C11119802
CP002798
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [CP002798, CP002799]
1106184
1106100
-
Leu
TAG
[Ensembl]
¡û
>W11134019
AEDK01000001
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
645057
644973
-
Leu
TAG
[ENA]
¡û
>W1511592097
LBIC01000003
Alphaproteobacteria
Sphingobium chungbukense DJ77 [LBIC]
398129
398045
-
Leu
TAG
[ENA]
¡û
>W1511646447
LECE01000007
Alphaproteobacteria
Sphingomonas sp. MEA3-1 [LECE]
39268
39352
+
Leu
TAG
[ENA]
¡û
>C161003370
CP005083
Alphaproteobacteria
Sphingobium sp. TKS [CP005083, CP005084]
2798250
2798166
-
Leu
TAG
[Ensembl]
¡û
>W1610076891
BCZC01000014
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
18252
18168
-
Leu
TAG
[ENA]
¡û
>W121068937
AJVL01000005
Alphaproteobacteria
Sphingobium sp. AP49 [AJVL]
91374
91290
-
Leu
TAG
[ENA]
¡û
>W121071144
AJXQ01000092
Alphaproteobacteria
Sphingobium indicum B90A [AJXQ]
67704
67788
+
Leu
TAG
[ENA]
¡û
>W121084345
AKIB01000096
Alphaproteobacteria
Sphingobium xenophagum QYY [AKIB]
51505
51421
-
Leu
TAG
[ENA]
¡û
>W1610609133
LFVX01000001
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
18849
18933
+
Leu
TAG
[ENA]
¡û
>W1610649227
LJHV01000012
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
32272
32188
-
Leu
TAG
[ENA]
¡û
>W1610719727
LMAF01000002
Alphaproteobacteria
Erythrobacter sp. YT30 [LMAF]
1874963
1875047
+
Leu
TAG
[ENA]
¡û
>W1610896259
LRUK01000028
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
22904
22820
-
Leu
TAG
[ENA]
¡û
>W1610914532
LSKF01000113
Alphaproteobacteria
Erythrobacteraceae bacterium CCH12-C2 [LSKF]
14220
14304
+
Leu
TAG
[ENA]
¡û
>W1610924213
LTAB01000001
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
626542
626458
-
Leu
TAG
[ENA]
¡û
>W1611016891
LYMJ01000001
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
452593
452509
-
Leu
TAG
[ENA]
¡û
>W1611050050
LZYB01000003
Alphaproteobacteria
Erythrobacter dokdonensis DSW-74 [LZYB]
450843
450927
+
Leu
TAG
[ENA]
¡û
>W1710074580
BCZC01000014
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
18252
18168
-
Leu
TAG
[ENA]
¡û
>W1710593206
FRDF01000003
Alphaproteobacteria
Erythrobacter sanguineus [FRDF]
118104
118188
+
Leu
TAG
[ENA]
¡û
>W1710730420
LFVX01000001
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
18849
18933
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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