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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180588 (127 seq.)
>W1710853132
LLWI01000081
Gammaproteobacteria
Pseudomonas sp. TAD18 [LLWI]
210617
210701
+
Leu
CAA
[ENA]
¡û
>W1710853193
LLWJ01000071
Gammaproteobacteria
Pseudomonas sp. TAA207 [LLWJ]
228176
228260
+
Leu
CAA
[ENA]
¡û
>W1710860400
LMCV01000023
Gammaproteobacteria
Pseudomonas sp. Root329 [LMCV]
243366
243282
-
Leu
CAA
[ENA]
¡û
>W1711314497
MAUK01000010
Gammaproteobacteria
Pseudomonas protegens [MAUK]
263055
262971
-
Leu
CAA
[ENA]
¡û
>W1711314557
MAUL01000008
Gammaproteobacteria
Pseudomonas protegens [MAUL]
263286
263202
-
Leu
CAA
[ENA]
¡û
>W1711350790
MCRS01000119
Gammaproteobacteria
Pseudomonas sp. BIOMIG1BAC [MCRS]
271692
271776
+
Leu
CAA
[ENA]
¡û
>W1711350843
MCRT01000165
Gammaproteobacteria
Pseudomonas sp. BIOMIG1BDMA [MCRT]
3533
3449
-
Leu
CAA
[ENA]
¡û
>W1711350890
MCRU01000226
Gammaproteobacteria
Pseudomonas sp. BIOMIG1BD [MCRU]
212939
213023
+
Leu
CAA
[ENA]
¡û
>W1711350932
MCRV01000222
Gammaproteobacteria
Pseudomonas sp. BIOMIG1N [MCRV]
271704
271788
+
Leu
CAA
[ENA]
¡û
>W1711625941
MPJC01000001
Gammaproteobacteria
Pseudomonas versuta A4R1.5 [MPJC]
438234
438318
+
Leu
CAA
[ENA]
¡û
>W1711626004
MPJD01000004
Gammaproteobacteria
Pseudomonas versuta A4R1.12 [MPJD]
395457
395541
+
Leu
CAA
[ENA]
¡û
>W1711678175
MRTZ01000016
Gammaproteobacteria
Pseudomonas protegens [MRTZ]
263015
262931
-
Leu
CAA
[ENA]
¡û
>W1711678194
MRUA01000001
Gammaproteobacteria
Pseudomonas protegens [MRUA]
921142
921226
+
Leu
CAA
[ENA]
¡û
>W1711678274
MRUB01000006
Gammaproteobacteria
Pseudomonas protegens [MRUB]
263300
263216
-
Leu
CAA
[ENA]
¡û
>W1711678342
MRUC01000006
Gammaproteobacteria
Pseudomonas protegens [MRUC]
921063
921147
+
Leu
CAA
[ENA]
¡û
>W1711748647
MULM01000122
Gammaproteobacteria
Pseudomonas sp. VI4.1 [MULM]
31002
30918
-
Leu
CAA
[ENA]
¡û
>C171021397
CP013184
Gammaproteobacteria
Pseudomonas protegens H78 [CP013184]
5739481
5739565
+
Leu
CAA
-
¡û
>C171077377
CP018319
Gammaproteobacteria
Pseudomonas frederiksbergensis AS1 [CP018319]
1278861
1278945
+
Leu
CAA
-
¡û
>W131091372
AOGS01000013
Gammaproteobacteria
Pseudomonas sp. Lz4W [AOGS]
384739
384823
+
Leu
CAA
[ENA]
¡û
>C016305
CP000076
Gammaproteobacteria
Pseudomonas protegens Pf-5 [CP000076]
5728407
5728491
+
Leu
CAA
[Ensembl]
¡û
>WENV180308788
OBJR01207416
[OBJR] soil metagenome; soil
91
175
+
Leu
CAA
[ENA]
¢þ
>W141188620
AYMU01000010
Gammaproteobacteria
Pseudomonas sp. PH1b [AYMU]
156161
156077
-
Leu
CAA
[ENA]
¡û
>W141212341
AZQQ01000106
Gammaproteobacteria
Pseudomonas mandelii PD30 [AZQQ]
30444
30360
-
Leu
CAA
[ENA]
¡û
>W141213290
AZRW01000059
Gammaproteobacteria
Pseudomonas sp. QTF5 [AZRW]
16542
16458
-
Leu
CAA
[ENA]
¡û
>WENV170707898
LNAP01038470
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
248
332
+
Leu
CAA
[ENA]
¢þ
>WENV170784434
MCND01000001
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
142022
142106
+
Leu
CAA
[ENA]
¢þ
>WENV170784509
MCNE01000001
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
3489
3405
-
Leu
CAA
[ENA]
¢þ
>WENV170784615
MCNF01000029
[MCNF] bioreactor metagenome; arboretum soil enriched with benzalkonium chloride
71913
71997
+
Leu
CAA
[ENA]
¢þ
>WENV170784709
MCNG01000063
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
34423
34507
+
Leu
CAA
[ENA]
¢þ
>C181025626
CP017432
Gammaproteobacteria
Pseudomonas sp. Lz4W [CP017432]
932164
932080
-
Leu
CAA
-
¡û
>C181057828
CP022097
Gammaproteobacteria
Pseudomonas protegens FDAARGOS_307 [CP022097]
3122641
3122557
-
Leu
CAA
-
¡û
>C181199941
CP031396
Gammaproteobacteria
Pseudomonas protegens FD6 [CP031396]
2190163
2190247
+
Leu
CAA
-
¡û
>C191051898
CP027706
Gammaproteobacteria
Pseudomonas sessilinigenes CMR12a [CP027706]
4938142
4938058
-
Leu
CAA
-
¡û
>C191130895
CP034783
Gammaproteobacteria
Pseudomonas sp. MPC6 [CP034783]
5783516
5783600
+
Leu
CAA
-
¡û
>C191226134
LS999205
Gammaproteobacteria
Pseudomonas protegens CHA0 [LS999205]
5566868
5566952
+
Leu
CAA
-
¡û
>W141695378
JMCL01000115
Gammaproteobacteria
Pseudomonas sp. Ant30-3 [JMCL]
7662
7746
+
Leu
CAA
[ENA]
¡û
>W1910184348
BJOO01000007
Gammaproteobacteria
Pseudomonas fluorescens NBRC 15842 [BJOO]
774636
774720
+
Leu
CAA
[ENA]
¡û
>W1910504306
FYDJ01000018
Gammaproteobacteria
Pseudomonas sp. Irchel s3h14 [FYDJ]
46615
46531
-
Leu
CAA
[ENA]
¡û
>W1910505373
FYEB01000008
Gammaproteobacteria
Pseudomonas sp. Irchel s3b2 [FYEB]
206748
206832
+
Leu
CAA
[ENA]
¡û
>W1910644748
LUUD01000001
Gammaproteobacteria
Pseudomonas protegens 4 [LUUD]
249289
249205
-
Leu
CAA
[ENA]
¡û
>W1910644818
LUUE01000041
Gammaproteobacteria
Pseudomonas protegens 11 [LUUE]
770385
770469
+
Leu
CAA
[ENA]
¡û
>W1910753133
MKGS01000113
Gammaproteobacteria
Pseudomonas sp. 43NM1 [MKGS]
168160
168244
+
Leu
CAA
[ENA]
¡û
>W1910766076
MOAK01000043
Gammaproteobacteria
Pseudomonas protegens 14B2 [MOAK]
64230
64314
+
Leu
CAA
[ENA]
¡û
>W1910766104
MOAL01000002
Gammaproteobacteria
Pseudomonas chlororaphis 14D6 [MOAL]
751477
751561
+
Leu
CAA
[ENA]
¡û
>W1910766349
MOAP01000005
Gammaproteobacteria
Pseudomonas protegens 12H11 [MOAP]
274603
274519
-
Leu
CAA
[ENA]
¡û
>W1910766409
MOAQ01000068
Gammaproteobacteria
Pseudomonas protegens 15G2 [MOAQ]
724566
724650
+
Leu
CAA
[ENA]
¡û
>W1910766481
MOAR01000013
Gammaproteobacteria
Pseudomonas protegens 15H3 [MOAR]
274603
274519
-
Leu
CAA
[ENA]
¡û
>W1910766497
MOAS01000003
Gammaproteobacteria
Pseudomonas protegens 38G2 [MOAS]
778093
778177
+
Leu
CAA
[ENA]
¡û
>W1910766571
MOAT01000002
Gammaproteobacteria
Pseudomonas protegens 1C5 [MOAT]
820183
820267
+
Leu
CAA
[ENA]
¡û
>W1910766615
MOAU01000003
Gammaproteobacteria
Pseudomonas protegens 1B1 [MOAU]
808605
808689
+
Leu
CAA
[ENA]
¡û
>W1910766714
MOAV01000004
Gammaproteobacteria
Pseudomonas protegens Wayne [MOAV]
799798
799882
+
Leu
CAA
[ENA]
¡û
>W1910766733
MOAW01000001
Gammaproteobacteria
Pseudomonas protegens Clinton [MOAW]
799798
799882
+
Leu
CAA
[ENA]
¡û
>W1910766796
MOAX01000002
Gammaproteobacteria
Pseudomonas protegens Darke [MOAX]
804126
804210
+
Leu
CAA
[ENA]
¡û
>W1910767724
MOBN01000014
Gammaproteobacteria
Pseudomonas lini 48C10 [MOBN]
262470
262554
+
Leu
CAA
[ENA]
¡û
>W1910767813
MOBO01000029
Gammaproteobacteria
Pseudomonas brassicacearum 38D4 [MOBO]
16146
16062
-
Leu
CAA
[ENA]
¡û
>W1910767879
MOBP01000023
Gammaproteobacteria
Pseudomonas frederiksbergensis 39A2 [MOBP]
192359
192275
-
Leu
CAA
[ENA]
¡û
>W1911578593
PEGA01000019
Gammaproteobacteria
Pseudomonas prosekii A2-NA12 [PEGA]
6263
6347
+
Leu
CAA
[ENA]
¡û
>W1911578617
PEGB01000003
Gammaproteobacteria
Pseudomonas prosekii A2-NA13 [PEGB]
427647
427731
+
Leu
CAA
[ENA]
¡û
>W1911586344
PIZE01000008
Gammaproteobacteria
Pseudomonas protegens XY2F4 [PIZE]
275797
275713
-
Leu
CAA
[ENA]
¡û
>W1911636170
PVUD01000002
Gammaproteobacteria
Pseudomonas sp. NFPP22 [PVUD]
263809
263725
-
Leu
CAA
[ENA]
¡û
>W1810204568
PODI01000011
Gammaproteobacteria
Pseudomonas sp. FW305-33 FW507-29LB [PODI]
135860
135776
-
Leu
CAA
[ENA]
¡û
>W1810204614
PODJ01000004
Gammaproteobacteria
Pseudomonas sp. FW305-47B [PODJ]
31477
31561
+
Leu
CAA
[ENA]
¡û
>W1810204665
PODK01000007
Gammaproteobacteria
Pseudomonas sp. FW305-60 GW456-A1B [PODK]
31477
31561
+
Leu
CAA
[ENA]
¡û
>W1810204720
PODL01000002
Gammaproteobacteria
Pseudomonas sp. FW305-20 [PODL]
242715
242631
-
Leu
CAA
[ENA]
¡û
>W1810204811
PODM01000034
Gammaproteobacteria
Pseudomonas sp. FW305-122 [PODM]
26482
26566
+
Leu
CAA
[ENA]
¡û
>W1810234151
PPEF01000001
Gammaproteobacteria
Pseudomonas protegens AS15 [PPEF]
263874
263790
-
Leu
CAA
[ENA]
¡û
>W1810239394
PPSI01000007
Gammaproteobacteria
Pseudomonas protegens GW456-12-1-14-LB1 [PPSI]
62238
62322
+
Leu
CAA
[ENA]
¡û
>W1810249935
PQCH02000007
Gammaproteobacteria
Pseudomonas sp. MWU12-2534b [PQCH]
397049
397133
+
Leu
CAA
[ENA]
¡û
>W1810403601
PYJM01000004
Gammaproteobacteria
Pseudomonas protegens BNJ-SS-45 [PYJM]
259883
259799
-
Leu
CAA
[ENA]
¡û
>W1810584376
QFAV01000003
Gammaproteobacteria
Pseudomonas prosekii P2406 [QFAV]
241192
241276
+
Leu
CAA
[ENA]
¡û
>W1810584470
QFAW01000043
Gammaproteobacteria
Pseudomonas prosekii P2673 [QFAW]
3157
3073
-
Leu
CAA
[ENA]
¡û
>W1810669993
QJRM01000010
Gammaproteobacteria
Pseudomonas protegens MB-090714 [QJRM]
278757
278673
-
Leu
CAA
[ENA]
¡û
>W1810670047
QJRN01000007
Gammaproteobacteria
Pseudomonas protegens MB-090624 [QJRN]
274152
274068
-
Leu
CAA
[ENA]
¡û
>W1810675642
QKLL01000001
Gammaproteobacteria
Pseudomonas sp. TKO30 [QKLL]
237257
237173
-
Leu
CAA
[ENA]
¡û
>W1810675704
QKLM01000001
Gammaproteobacteria
Pseudomonas sp. TKO29 [QKLM]
237257
237173
-
Leu
CAA
[ENA]
¡û
>W1810675766
QKLN01000001
Gammaproteobacteria
Pseudomonas sp. TKO26 [QKLN]
237257
237173
-
Leu
CAA
[ENA]
¡û
>W1810675828
QKLO01000001
Gammaproteobacteria
Pseudomonas sp. TKO14 [QKLO]
237257
237173
-
Leu
CAA
[ENA]
¡û
>W1810685413
QKZG01000006
Gammaproteobacteria
Pseudomonas sp. 478 [QKZG]
60381
60465
+
Leu
CAA
[ENA]
¡û
>C151001780
AP014522
Gammaproteobacteria
Pseudomonas protegens Cab57 [AP014522]
5544985
5545069
+
Leu
CAA
[Ensembl]
¡û
>C151097161
CP012676
Gammaproteobacteria
Pseudomonas versuta L10.10 [CP012676]
294009
293925
-
Leu
CAA
-
¡û
>W1510800436
JBOO01000004
Gammaproteobacteria
Pseudomonas fluorescens PA3G8 [JBOO]
118478
118394
-
Leu
CAA
[ENA]
¡û
>W1511531015
JYLB01000002
Gammaproteobacteria
Pseudomonas lini DSM 16768 [JYLB]
18789
18705
-
Leu
CAA
[ENA]
¡û
>W1511531117
JYLD01000002
Gammaproteobacteria
Pseudomonas helleri DSM 29165 [JYLD]
126165
126249
+
Leu
CAA
[ENA]
¡û
>W1511531179
JYLE01000005
Gammaproteobacteria
Pseudomonas helleri DSM 28141 [JYLE]
9732
9648
-
Leu
CAA
[ENA]
¡û
>W1511531258
JYLF01000001
Gammaproteobacteria
Pseudomonas weihenstephanensis DSM 29166 [JYLF]
366366
366282
-
Leu
CAA
[ENA]
¡û
>W1511531324
JYLG01000004
Gammaproteobacteria
Pseudomonas weihenstephanensis DSM 28140 [JYLG]
421629
421713
+
Leu
CAA
[ENA]
¡û
>W1511548008
JZRI01000138
Gammaproteobacteria
Pseudomonas sp. ES3-33 [JZRI]
7785
7869
+
Leu
CAA
[ENA]
¡û
>W1511563470
LACD01000005
Gammaproteobacteria
Pseudomonas fluorescens C3 [LACD]
404394
404310
-
Leu
CAA
[ENA]
¡û
>W1511563724
LACH01000027
Gammaproteobacteria
Pseudomonas fluorescens H24 [LACH]
10516
10432
-
Leu
CAA
[ENA]
¡û
>W1511625544
LCZB01000065
Gammaproteobacteria
Pseudomonas fluorescens AU11706 [LCZB]
52309
52393
+
Leu
CAA
[ENA]
¡û
>W1511625603
LCZC01000019
Gammaproteobacteria
Pseudomonas protegens AU13852 [LCZC]
80416
80500
+
Leu
CAA
[ENA]
¡û
>W1511633113
LDET01000035
Gammaproteobacteria
Pseudomonas protegens AU20219 [LDET]
435775
435859
+
Leu
CAA
[ENA]
¡û
>W1511685877
LFQK01000018
Gammaproteobacteria
Pseudomonas syringae Riq4 [LFQK]
13135
13051
-
Leu
CAA
[ENA]
¡û
>W1511686176
LFQO01000114
Gammaproteobacteria
Pseudomonas lini ZBG1 [LFQO]
6564
6480
-
Leu
CAA
[ENA]
¡û
>W11187013
CADW01000158
Gammaproteobacteria
Pseudomonas fluorescens Wayne1 [CADW]
42811
42727
-
Leu
CAA
[ENA]
¡û
>W11187076
CADX01000071
Gammaproteobacteria
Pseudomonas fluorescens Wayne1 [CADX]
178638
178722
+
Leu
CAA
[ENA]
¡û
>C161000520
AP014627
Gammaproteobacteria
Pseudomonas sp. Os17 [AP014627]
5556175
5556259
+
Leu
CAA
[Ensembl]
¡û
>C161000588
AP014628
Gammaproteobacteria
Pseudomonas sp. St29 [AP014628]
5497211
5497295
+
Leu
CAA
-
¡û
>C161061470
CP013861
Gammaproteobacteria
Pseudomonas fragi P121 [CP013861]
973242
973158
-
Leu
CAA
[Ensembl]
¡û
>C161078964
CP014870
Gammaproteobacteria
Pseudomonas silesiensis A3 [CP014870]
5480459
5480543
+
Leu
CAA
[Ensembl]
¡û
>W121044740
AHZY01000008
Gammaproteobacteria
Pseudomonas fragi A22 [AHZY]
13930
13846
-
Leu
CAA
[ENA]
¡û
>W121070669
AJXF01000936
Gammaproteobacteria
Pseudomonas fluorescens NZI7 [AJXF]
43957
44041
+
Leu
CAA
[ENA]
¡û
>W121085868
AKJN01000046
Gammaproteobacteria
Pseudomonas sp. GM41(2012) [AKJN]
50788
50704
-
Leu
CAA
[ENA]
¡û
>W121111150
ALJC01000038
Gammaproteobacteria
Pseudomonas psychrophila HA-4 [ALJC]
124649
124565
-
Leu
CAA
[ENA]
¡û
>C131002250
CP003190
Gammaproteobacteria
Pseudomonas protegens CHA0 [CP003190]
5566545
5566629
+
Leu
CAA
[Ensembl]
¡û
>W1610620762
LHPC01000021
Gammaproteobacteria
Pseudomonas sp. RIT-PI-q [LHPC]
293917
293833
-
Leu
CAA
[ENA]
¡û
>W1610716256
LLWI01000081
Gammaproteobacteria
Pseudomonas sp. TAD18 [LLWI]
210617
210701
+
Leu
CAA
[ENA]
¡û
>W1610716317
LLWJ01000071
Gammaproteobacteria
Pseudomonas sp. TAA207 [LLWJ]
228176
228260
+
Leu
CAA
[ENA]
¡û
>W1610722746
LMCV01000023
Gammaproteobacteria
Pseudomonas sp. Root329 [LMCV]
243366
243282
-
Leu
CAA
[ENA]
¡û
>W1611059372
MAUK01000010
Gammaproteobacteria
Pseudomonas protegens [MAUK]
263055
262971
-
Leu
CAA
[ENA]
¡û
>W1611059432
MAUL01000008
Gammaproteobacteria
Pseudomonas protegens [MAUL]
263286
263202
-
Leu
CAA
[ENA]
¡û
>W1710508655
FMWI01000002
Gammaproteobacteria
Pseudomonas sp. NFPP17 [FMWI]
281291
281207
-
Leu
CAA
[ENA]
¡û
>W1710509032
FMWW01000002
Gammaproteobacteria
Pseudomonas sp. NFPP12 [FMWW]
829966
830050
+
Leu
CAA
[ENA]
¡û
>W1710509755
FMXL01000002
Gammaproteobacteria
Pseudomonas sp. NFPP15 [FMXL]
281264
281180
-
Leu
CAA
[ENA]
¡û
>W1710536485
FNTF01000002
Gammaproteobacteria
Pseudomonas frederiksbergensis [FNTF]
2193531
2193447
-
Leu
CAA
[ENA]
¡û
>W1710536711
FNTJ01000001
Gammaproteobacteria
Pseudomonas saponiphila [FNTJ]
1112222
1112138
-
Leu
CAA
[ENA]
¡û
>W1710543011
FNZP01000002
Gammaproteobacteria
Pseudomonas sp. NFPP18 [FNZP]
800141
800225
+
Leu
CAA
[ENA]
¡û
>W1710544150
FOAQ01000002
Gammaproteobacteria
Pseudomonas sp. NFPP10 [FOAQ]
829775
829859
+
Leu
CAA
[ENA]
¡û
>W1710550047
FOEY01000007
Gammaproteobacteria
Pseudomonas sp. NFPP19 [FOEY]
264052
263968
-
Leu
CAA
[ENA]
¡û
>W1710555681
FOJR01000002
Gammaproteobacteria
Pseudomonas sp. NFPP13 [FOJR]
281297
281213
-
Leu
CAA
[ENA]
¡û
>W1710564701
FOQR01000002
Gammaproteobacteria
Pseudomonas sp. NFPP08 [FOQR]
829801
829885
+
Leu
CAA
[ENA]
¡û
>W1710569289
FOUH01000002
Gammaproteobacteria
Pseudomonas sp. NFPP05 [FOUH]
829766
829850
+
Leu
CAA
[ENA]
¡û
>W1710578012
FPBG01000002
Gammaproteobacteria
Pseudomonas sp. NFPP25 [FPBG]
281264
281180
-
Leu
CAA
[ENA]
¡û
>W1710581060
FPJV01000002
Gammaproteobacteria
Pseudomonas sp. NFPP09 [FPJV]
829865
829949
+
Leu
CAA
[ENA]
¡û
>W1710581637
FPKG01000002
Gammaproteobacteria
Pseudomonas sp. NFPP14 [FPKG]
281306
281222
-
Leu
CAA
[ENA]
¡û
>W1710581802
FPKJ01000002
Gammaproteobacteria
Pseudomonas sp. NFPP16 [FPKJ]
281296
281212
-
Leu
CAA
[ENA]
¡û
>W1710748456
LHPC01000021
Gammaproteobacteria
Pseudomonas sp. RIT-PI-q [LHPC]
293917
293833
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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