This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180624 (61 seq.)
>W1711135983
LUZR01000039
Betaproteobacteria
Burkholderiales bacterium Beta_02 [LUZR]
14283
14199
-
Leu
CAG
[ENA]
¡û
>W1711387416
MEGQ01000002
Betaproteobacteria
Thiomonas sp. SCN 64-16 [MEGQ]
91762
91678
-
Leu
CAG
[ENA]
¡û
>C171085198
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
1003084
1003000
-
Leu
CAG
-
¡û
>C171103234
CP020046
Betaproteobacteria
Thiomonas intermedia ATCC 15466 [CP020046]
321292
321376
+
Leu
CAG
-
¡û
>W131050699
AMXA01000002
Betaproteobacteria
Thauera sp. 28 [AMXA]
193971
194055
+
Leu
CAG
[ENA]
¡û
>W131050786
AMXB01000045
Betaproteobacteria
Thauera sp. 27 [AMXB]
30513
30429
-
Leu
CAG
[ENA]
¡û
>W131050840
AMXC01000054
Betaproteobacteria
Thauera sp. 63 [AMXC]
399
483
+
Leu
CAG
[ENA]
¡û
>W131050890
AMXD01000133
Betaproteobacteria
Thauera aminoaromatica S2 [AMXD]
9529
9445
-
Leu
CAG
[ENA]
¡û
>W131050942
AMXE01000070
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [AMXE]
16849
16765
-
Leu
CAG
[ENA]
¡û
>W131176287
ARJX01000046
Betaproteobacteria
Aromatoleum toluclasticum ATCC 700605 [ARJX]
262303
262387
+
Leu
CAG
[ENA]
¡û
>C001325
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
1005437
1005353
-
Leu
CAG
[Ensembl]
¡û
>C001334
CR555306
Betaproteobacteria
Aromatoleum aromaticum EbN1 [CR555306]
735160
735244
+
Leu
CAG
[Ensembl]
¡û
>WENV181231013
OFEK01007386
[OFEK] activated sludge metagenome; Anaerobic digester
3535
3619
+
Leu
CAG
[ENA]
¢þ
>W08007991
ABKT01000005
Betaproteobacteria
Thauera sp. MZ1T [ABKT] MZ1T [ABKT]
52098
52182
+
Leu
CAG
[ENA]
¡û
>WENV170652785
JRYH01027936
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1261
1345
+
Leu
CAG
[ENA]
¢þ
>WENV170961942
MLJW01009260
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
951
867
-
Leu
CAG
[ENA]
¢þ
>C181060421
CP022187
Betaproteobacteria
Parazoarcus communis TSPY31 [CP022187]
4192890
4192806
-
Leu
CAG
-
¡û
>C181060422
CP022187
Betaproteobacteria
Parazoarcus communis TSPY31 [CP022187]
4192613
4192529
-
Leu
CAG
-
¡û
>C181060495
CP022188
Betaproteobacteria
Parazoarcus communis TSNA42 [CP022188]
2380485
2380401
-
Leu
CAG
-
¡û
>C181060496
CP022188
Betaproteobacteria
Parazoarcus communis TSNA42 [CP022188]
2380208
2380124
-
Leu
CAG
-
¡û
>C181081493
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
483879
483795
-
Leu
CAG
-
¡û
>C181164205
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
1043827
1043743
-
Leu
CAG
-
¡û
>C191019200
CP021731
Betaproteobacteria
Azoarcus sp. DN11 [CP021731]
991132
991048
-
Leu
CAG
-
¡û
>C191022920
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
1182832
1182748
-
Leu
CAG
-
¡û
>W141561722
JHYR01000008
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [JHYR]
174776
174860
+
Leu
CAG
[ENA]
¡û
>W1910211095
FMBP01000008
Betaproteobacteria
Thiomonas sp. X19 [FMBP]
468354
468438
+
Leu
CAG
[ENA]
¡û
>W1911114384
NOIH01000026
Betaproteobacteria
Thauera propionica KNDSS-Mac4 [NOIH]
113351
113435
+
Leu
CAG
[ENA]
¡û
>W1810444919
PZKC01000011
Betaproteobacteria
Pseudothauera lacus D20 [PZKC]
111548
111464
-
Leu
CAG
[ENA]
¡û
>W1810679140
QKOE01000003
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
16535
16619
+
Leu
CAG
[ENA]
¡û
>W1810679141
QKOE01000003
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
16838
16922
+
Leu
CAG
[ENA]
¡û
>C151076218
CP011072
Betaproteobacteria
Azoarcus sp. CIB [CP011072]
817871
817787
-
Leu
CAG
-
¡û
>C151076219
CP011072
Betaproteobacteria
Azoarcus sp. CIB [CP011072]
817639
817555
-
Leu
CAG
-
¡û
>W10105791
ACXV01000010
Betaproteobacteria
Thiomonas intermedia K12 [ACXV]
1649
1565
-
Leu
CAG
[ENA]
¡û
>C10113189
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
3697775
3697859
+
Leu
CAG
[Ensembl]
¡û
>C10113332
CP002021
Betaproteobacteria
Thiomonas intermedia [CP002021]
2023420
2023504
+
Leu
CAG
[Ensembl]
¡û
>W11108111
ACXV01000010
Betaproteobacteria
Thiomonas intermedia K12 [ACXV]
1649
1565
-
Leu
CAG
[ENA]
¡û
>W1511398297
JTDM01000018
Betaproteobacteria
Thauera sp. SWB20 [JTDM]
282545
282629
+
Leu
CAG
[ENA]
¡û
>W1511580978
LARU01000002
Betaproteobacteria
Azoarcus sp. PA01 [LARU]
740900
740984
+
Leu
CAG
[ENA]
¡û
>W1511686480
LFRJ01000015
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
1520496
1520412
-
Leu
CAG
[ENA]
¡û
>C121016348
FP475956
Betaproteobacteria
Thiomonas arsenitoxydans 3As [FP475956]
2275813
2275897
+
Leu
CAG
[Ensembl]
¡û
>C161075106
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
4065750
4065666
-
Leu
CAG
[Ensembl]
¡û
>C161095112
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
1045103
1045019
-
Leu
CAG
-
¡û
>W1610042918
BAZL01000338
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
598
682
+
Leu
CAG
[ENA]
¡û
>W1610071692
BCUG01000016
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
93528
93444
-
Leu
CAG
[ENA]
¡û
>W1610085390
CTRI01000004
Betaproteobacteria
Thiomonas arsenitoxydans B1 [CTRI]
101012
101096
+
Leu
CAG
[ENA]
¡û
>W1610085438
CTRJ01000013
Betaproteobacteria
Thiomonas arsenitoxydans CB6 [CTRJ]
45130
45046
-
Leu
CAG
[ENA]
¡û
>W1610085477
CTRK01000042
Betaproteobacteria
Thiomonas arsenitoxydans ACO3 [CTRK]
56462
56546
+
Leu
CAG
[ENA]
¡û
>W1610085518
CTRL01000042
Betaproteobacteria
Thiomonas arsenitoxydans ACO7 [CTRL]
56459
56543
+
Leu
CAG
[ENA]
¡û
>W1610085549
CTRM01000010
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
90220
90136
-
Leu
CAG
[ENA]
¡û
>C131000339
AP012304
Betaproteobacteria
Azoarcus sp. KH32C [AP012304]
885425
885341
-
Leu
CAG
[Ensembl]
¡û
>W1610617612
LGUD01000021
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
76089
76173
+
Leu
CAG
[ENA]
¡û
>W1610947103
LUZR01000039
Betaproteobacteria
Burkholderiales bacterium Beta_02 [LUZR]
14283
14199
-
Leu
CAG
[ENA]
¡û
>W1710040078
BAZL01000338
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
598
682
+
Leu
CAG
[ENA]
¡û
>W1710068894
BCUG01000016
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
93528
93444
-
Leu
CAG
[ENA]
¡û
>W1710089979
CTRI01000004
Betaproteobacteria
Thiomonas arsenitoxydans B1 [CTRI]
101012
101096
+
Leu
CAG
[ENA]
¡û
>W1710090027
CTRJ01000013
Betaproteobacteria
Thiomonas arsenitoxydans CB6 [CTRJ]
45130
45046
-
Leu
CAG
[ENA]
¡û
>W1710090066
CTRK01000042
Betaproteobacteria
Thiomonas arsenitoxydans ACO3 [CTRK]
56462
56546
+
Leu
CAG
[ENA]
¡û
>W1710090107
CTRL01000042
Betaproteobacteria
Thiomonas arsenitoxydans ACO7 [CTRL]
56459
56543
+
Leu
CAG
[ENA]
¡û
>W1710090138
CTRM01000010
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
90220
90136
-
Leu
CAG
[ENA]
¡û
>W1710539451
FNVJ01000004
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
154140
154056
-
Leu
CAG
[ENA]
¡û
>W1710743162
LGUD01000021
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
76089
76173
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK