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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180653 (87 seq.)
>W1710861081
LMDJ01000033
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
80580
80664
+
Leu
GAG
[ENA]
¡û
>W1710862045
LMEC01000020
Betaproteobacteria
Massilia sp. Root418 [LMEC]
1098620
1098536
-
Leu
GAG
[ENA]
¡û
>W1710890948
LNCE01000178
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
122238
122322
+
Leu
GAG
[ENA]
¡û
>W1710924050
LOCQ01000062
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
418972
419056
+
Leu
GAG
[ENA]
¡û
>W1711033399
LRHW01000052
Betaproteobacteria
Janthinobacterium lividum [LRHW]
178467
178383
-
Leu
GAG
[ENA]
¡û
>W1711033496
LRHX01000020
Betaproteobacteria
Janthinobacterium sp. MP5059B [LRHX]
209330
209414
+
Leu
GAG
[ENA]
¡û
>W1711033703
LRIB01000023
Betaproteobacteria
Janthinobacterium sp. HH104 [LRIB]
190124
190040
-
Leu
GAG
[ENA]
¡û
>W1711430713
MIJG01000006
Betaproteobacteria
Herbaspirillum camelliae WT00C [MIJG]
569845
569929
+
Leu
GAG
[ENA]
¡û
>W131045997
AMSA01000003
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os45 [AMSA]
82445
82529
+
Leu
GAG
[ENA]
¡û
>W131046039
AMSB01000001
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os34 [AMSB]
91414
91498
+
Leu
GAG
[ENA]
¡û
>W131062289
ANJR01000020
Betaproteobacteria
Herbaspirillum huttiense subsp. putei IAM 15032 [ANJR]
58479
58395
-
Leu
GAG
[ENA]
¡û
>W131106674
APFF01000021
Betaproteobacteria
Janthinobacterium sp. CG3 [APFF]
344023
344107
+
Leu
GAG
[ENA]
¡û
>W1711765104
MUXB01000081
Betaproteobacteria
Herbaspirillum sp. VT-16-41 [MUXB]
31287
31371
+
Leu
GAG
[ENA]
¡û
>W1712004615
NEGZ01000026
Betaproteobacteria
Janthinobacterium sp. GW458P [NEGZ]
47146
47062
-
Leu
GAG
[ENA]
¡û
>W1712110260
NJGU01000004
Betaproteobacteria
Herbaspirillum robiniae HZ10 [NJGU]
32933
33017
+
Leu
GAG
[ENA]
¡û
>W1712110313
NJGV01000004
Betaproteobacteria
Herbaspirillum aquaticum [NJGV]
184506
184590
+
Leu
GAG
[ENA]
¡û
>C171021201
CP013136
Betaproteobacteria
Herbaspirillum seropedicae AU14040 [CP013136]
1977959
1978043
+
Leu
GAG
-
¡û
>C171085350
CP018845
Betaproteobacteria
Herbaspirillum robiniae AA6 [CP018845]
250101
250185
+
Leu
GAG
-
¡û
>C171095008
CP019510
Betaproteobacteria
Janthinobacterium sp. LM6 [CP019510]
4730137
4730053
-
Leu
GAG
-
¡û
>WENV180035701
FTLB01000002
[FTLB] metagenome; soil
213364
213280
-
Leu
GAG
[ENA]
¢þ
>W141003840
AEEC02000031
Betaproteobacteria
Herbaspirillum frisingense GSF30 [AEEC]
45263
45347
+
Leu
GAG
[ENA]
¡û
>WENV181388414
OFRM01015078
[OFRM] wastewater metagenome; Exp Tend VB 0WW
89
5
-
Leu
GAG
[ENA]
¢þ
>WENV181398774
OFSE01001442
[OFSE] wastewater metagenome; Exp Tend VB 50WW
4351
4435
+
Leu
GAG
[ENA]
¢þ
>W141223399
BADF01000131
Betaproteobacteria
Herbaspirillum sp. B39 [BADF]
3902
3818
-
Leu
GAG
[ENA]
¡û
>W141223544
BADJ01001153
Betaproteobacteria
Herbaspirillum sp. B501 [BADJ]
1293
1377
+
Leu
GAG
[ENA]
¡û
>W141258918
CBXX010000035
Betaproteobacteria
Herbaspirillum sp. RV1423 [CBXX]
17825
17741
-
Leu
GAG
[ENA]
¡û
>WENV183696784
OUMA01000006
[OUMA] metagenome; soil
10544
10628
+
Leu
GAG
[ENA]
¢þ
>WENV170001737
AGFS01136645
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
207
123
-
Leu
GAG
[ENA]
¢þ
>WENV170165377
CEON01114338
[CEON] marine metagenome genome assembly TARA_034_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
202
286
+
Leu
GAG
[ENA]
¢þ
>WENV170202171
CEPQ01125996
[CEPQ] marine metagenome genome assembly TARA_038_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
800
716
-
Leu
GAG
[ENA]
¢þ
>WENV170559237
CXWL01115570
[CXWL] groundwater metagenome; biofilm material
40037
39953
-
Leu
GAG
[ENA]
¢þ
>WENV170559303
CXWL01118465
[CXWL] groundwater metagenome; biofilm material
2859
2775
-
Leu
GAG
[ENA]
¢þ
>W141484439
JFYR01000004
Betaproteobacteria
Janthinobacterium lividum [JFYR]
186358
186274
-
Leu
GAG
[ENA]
¡û
>C181071860
CP022736
Betaproteobacteria
Herbaspirillum sp. meg3 [CP022736]
3089063
3088979
-
Leu
GAG
-
¡û
>C191029332
CP024996
Betaproteobacteria
Herbaspirillum rubrisubalbicans DSM 11543 [CP024996]
1930595
1930679
+
Leu
GAG
-
¡û
>C191124229
CP034395
Betaproteobacteria
Herbaspirillum seropedicae AU13965 [CP034395]
1856814
1856898
+
Leu
GAG
-
¡û
>C191125982
CP034464
Betaproteobacteria
Undibacterium parvum DSM 23061 [CP034464]
377751
377667
-
Leu
GAG
-
¡û
>C191156615
CP037993
Betaproteobacteria
Herbaspirillum huttiense NFYY 53159 [CP037993]
2004104
2004188
+
Leu
GAG
-
¡û
>W1910577870
JUGD01000026
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os38 [JUGD]
83936
84020
+
Leu
GAG
[ENA]
¡û
>W1910578273
JWJC01000001
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os44 [JWJC]
82447
82531
+
Leu
GAG
[ENA]
¡û
>W1911199882
NRDQ01000070
Betaproteobacteria
Janthinobacterium sp. AD80 [NRDQ]
22557
22641
+
Leu
GAG
[ENA]
¡û
>W1810068167
PDZI01000005
Betaproteobacteria
Janthinobacterium sp. BJB303 [PDZI]
180257
180173
-
Leu
GAG
[ENA]
¡û
>W1810068240
PDZJ01000001
Betaproteobacteria
Janthinobacterium sp. BJB301 [PDZJ]
2781599
2781515
-
Leu
GAG
[ENA]
¡û
>W1810068324
PDZK01000001
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
2796676
2796592
-
Leu
GAG
[ENA]
¡û
>W1810068619
PDZO02000001
Betaproteobacteria
Janthinobacterium sp. BJB1 [PDZO]
678792
678708
-
Leu
GAG
[ENA]
¡û
>W1810071291
PEEQ01000001
Betaproteobacteria
Janthinobacterium sp. 13 [PEEQ]
4957829
4957913
+
Leu
GAG
[ENA]
¡û
>W1810089431
PGES01000001
Betaproteobacteria
Janthinobacterium sp. 67 [PGES]
2171730
2171646
-
Leu
GAG
[ENA]
¡û
>W1810172843
PJMQ01000001
Betaproteobacteria
Janthinobacterium sp. 61 [PJMQ]
2642088
2642004
-
Leu
GAG
[ENA]
¡û
>W1810194070
PKOI01000029
Betaproteobacteria
Herbaspirillum sp. BH-1 [PKOI]
17073
16989
-
Leu
GAG
[ENA]
¡û
>W1810326777
PUGF01000020
Betaproteobacteria
Solimicrobium silvestre S20-91 [PUGF]
69642
69558
-
Leu
GAG
[ENA]
¡û
>W1810486619
QAXZ01000008
Betaproteobacteria
Massilia sp. GV045 [QAXZ]
187685
187769
+
Leu
GAG
[ENA]
¡û
>W1810487121
QAYI01000007
Betaproteobacteria
Massilia sp. GV016 [QAYI]
182452
182536
+
Leu
GAG
[ENA]
¡û
>W1810659428
QJKB01000001
Betaproteobacteria
Undibacterium pigrum DSM 19792 [QJKB]
1343876
1343792
-
Leu
GAG
[ENA]
¡û
>W1810672608
QJTN01000007
Betaproteobacteria
Massilia sp. GV024 [QJTN]
182647
182731
+
Leu
GAG
[ENA]
¡û
>W1810887514
QUQN01000001
Betaproteobacteria
Herbaspirillum sp. 3R-3a1 [QUQN]
923017
922933
-
Leu
GAG
[ENA]
¡û
>C151082380
CP011409
Betaproteobacteria
Herbaspirillum hiltneri N3 [CP011409]
3653305
3653221
-
Leu
GAG
-
¡û
>C151087564
CP011930
Betaproteobacteria
Herbaspirillum seropedicae Z67 [CP011930]
1997642
1997726
+
Leu
GAG
[Ensembl]
¡û
>C151100186
HG322949
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [HG322949]
3651681
3651597
-
Leu
GAG
[Ensembl]
¡û
>C10107800
CP002039
Betaproteobacteria
Herbaspirillum seropedicae SmR1 [CP002039]
1997882
1997966
+
Leu
GAG
[Ensembl]
¡û
>WENV11101809
AGFS01136645
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
207
123
-
Leu
GAG
[ENA]
¡û
>W1511355678
JRRH01000006
Betaproteobacteria
Janthinobacterium lividum MTR [JRRH]
295506
295422
-
Leu
GAG
[ENA]
¡û
>W1511588761
LBCO01000024
Betaproteobacteria
Janthinobacterium sp. KBS0711 [LBCO]
59533
59617
+
Leu
GAG
[ENA]
¡û
>W1511683790
LFLS01000042
Betaproteobacteria
Herbaspirillum autotrophicum IAM 14942 [LFLS]
17364
17280
-
Leu
GAG
[ENA]
¡û
>W1511683836
LFLT01000016
Betaproteobacteria
Herbaspirillum chlorophenolicum CPW301 [LFLT]
77694
77610
-
Leu
GAG
[ENA]
¡û
>W1511683885
LFLU01000006
Betaproteobacteria
Herbaspirillum rhizosphaerae UMS-37 [LFLU]
209218
209134
-
Leu
GAG
[ENA]
¡û
>C161060437
CP013737
Betaproteobacteria
Herbaspirillum rubrisubalbicans M1 [CP013737]
1904607
1904691
+
Leu
GAG
[Ensembl]
¡û
>W121061951
AJHH01000051
Betaproteobacteria
Herbaspirillum lusitanum P6-12 [AJHH]
31109
31193
+
Leu
GAG
[ENA]
¡û
>W121068687
AJVC01000003
Betaproteobacteria
Herbaspirillum sp. GW103 [AJVC]
493614
493698
+
Leu
GAG
[ENA]
¡û
>W121085185
AKJA01000140
Betaproteobacteria
Herbaspirillum sp. YR522 [AKJA]
6157
6073
-
Leu
GAG
[ENA]
¡û
>W121086387
AKJW01000077
Betaproteobacteria
Herbaspirillum sp. CF444 [AKJW]
32071
32155
+
Leu
GAG
[ENA]
¡û
>W1610070419
BCTG01000003
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
23994
24078
+
Leu
GAG
[ENA]
¡û
>W1610070471
BCTH01000027
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
9788
9872
+
Leu
GAG
[ENA]
¡û
>W1610071842
BCUJ01000009
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
104017
103933
-
Leu
GAG
[ENA]
¡û
>W1610723427
LMDJ01000033
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
80580
80664
+
Leu
GAG
[ENA]
¡û
>W1610724391
LMEC01000020
Betaproteobacteria
Massilia sp. Root418 [LMEC]
1098620
1098536
-
Leu
GAG
[ENA]
¡û
>W1610751344
LNCE01000178
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
122238
122322
+
Leu
GAG
[ENA]
¡û
>W1610781696
LOCQ01000062
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
418972
419056
+
Leu
GAG
[ENA]
¡û
>W1710067792
BCTG01000003
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
23994
24078
+
Leu
GAG
[ENA]
¡û
>W1710067844
BCTH01000027
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
9788
9872
+
Leu
GAG
[ENA]
¡û
>W1710069044
BCUJ01000009
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
104017
103933
-
Leu
GAG
[ENA]
¡û
>W1710509334
FMXD01000001
Betaproteobacteria
Janthinobacterium sp. 551a [FMXD]
486725
486641
-
Leu
GAG
[ENA]
¡û
>W1710517017
FNDA01000001
Betaproteobacteria
Janthinobacterium sp. YR213 [FNDA]
1582706
1582622
-
Leu
GAG
[ENA]
¡û
>W1710522186
FNHA01000002
Betaproteobacteria
Janthinobacterium sp. OK676 [FNHA]
74445
74361
-
Leu
GAG
[ENA]
¡û
>W1710547561
FODC01000001
Betaproteobacteria
Duganella sp. CF517 [FODC]
1052278
1052194
-
Leu
GAG
[ENA]
¡û
>W1710556732
FOKL01000001
Betaproteobacteria
Janthinobacterium sp. 344 [FOKL]
486921
486837
-
Leu
GAG
[ENA]
¡û
>W1710581684
FPKH01000001
Betaproteobacteria
Janthinobacterium lividum [FPKH]
352234
352318
+
Leu
GAG
[ENA]
¡û
>W1710596855
FTMV01000003
Betaproteobacteria
Janthinobacterium sp. TND4EL3 [FTMV]
451967
452051
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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