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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180675 (22 seq.)
>W1711138238
LVCP01000016
Mycoplasmatota
Acholeplasma laidlawii [LVCP]
14853
14777
-
Arg
ACG
[ENA]
¡û
>W1711229031
LXYB01000009
Mycoplasmatota
Acholeplasma laidlawii [LXYB]
14485
14409
-
Arg
ACG
[ENA]
¡û
>W1711274101
LZGE01000012
Mycoplasmatota
Acholeplasma laidlawii [LZGE]
14852
14776
-
Arg
ACG
[ENA]
¡û
>W1711274132
LZGF01000014
Mycoplasmatota
Acholeplasma laidlawii [LZGF]
14854
14778
-
Arg
ACG
[ENA]
¡û
>W131221423
AUAL01000026
Mycoplasmatota
Haploplasma axanthum ATCC 25176 [AUAL]
3668
3744
+
Arg
ACG
[ENA]
¡û
>W1711437752
MIPS01000014
Mycoplasmatota
Acholeplasma laidlawii [MIPS]
67403
67327
-
Arg
ACG
[ENA]
¡û
>WENV180297284
OBJA01019721
[OBJA] soil metagenome; sediment, water from around vicinity
1831
1755
-
Arg
ACG
[ENA]
¢þ
>C08000465
CP000896
Mycoplasmatota
Acholeplasma laidlawii PG-8A [CP000896]
1196879
1196806
-
Arg
ACG
[Ensembl]
¡û
>W141278621
JAFR01000002
Mycoplasmatota
Acholeplasma granularum ATCC 19168 [JAFR]
5622
5698
+
Arg
ACG
[ENA]
¡û
>WENV170689968
LFRM01319239
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1010
934
-
Arg
ACG
[ENA]
¢þ
>C181213443
LS483439
Mycoplasmatota
Acholeplasma laidlawii NCTC10116 [LS483439]
1197366
1197290
-
Arg
ACG
-
¡û
>C191218804
LR215048
Mycoplasmatota
Haploplasma axanthum NCTC10138 [LR215048]
637770
637846
+
Arg
ACG
-
¡û
>C191218884
LR215050
Mycoplasmatota
Acholeplasma hippikon NCTC10172 [LR215050]
1290678
1290754
+
Arg
ACG
-
¡û
>W141560300
JHXL01000015
Mycoplasmatota
Acholeplasma equifetale ATCC 29724 [JHXL]
2687
2763
+
Arg
ACG
[ENA]
¡û
>W141560983
JHYB01000002
Mycoplasmatota
Haploplasma modicum ATCC 29102 [JHYB]
3098
3174
+
Arg
ACG
[ENA]
¡û
>W141732149
JNJT01000006
Mycoplasmatota
Acholeplasma hippikon ATCC 29725 [JNJT]
9239
9163
-
Arg
ACG
[ENA]
¡û
>W1910884392
NELN02000004
Mycoplasmatota
Acholeplasma laidlawii PG8RMel [NELN]
3431
3507
+
Arg
ACG
[ENA]
¡û
>W1910884424
NELO02000004
Mycoplasmatota
Acholeplasma laidlawii PG8RTet [NELO]
3431
3507
+
Arg
ACG
[ENA]
¡û
>W1810787476
QRDS01000001
Mycoplasmatota
Acholeplasma laidlawii DSM 23060 [QRDS]
1118978
1118902
-
Arg
ACG
[ENA]
¡û
>C151102175
LK028559
Mycoplasmatota
Acholeplasma oculi [LK028559]
373745
373821
+
Arg
ACG
[Ensembl]
¡û
>W1610949324
LVCP01000016
Mycoplasmatota
Acholeplasma laidlawii [LVCP]
14853
14777
-
Arg
ACG
[ENA]
¡û
>W1710603799
FUZK01000005
Mycoplasmatota
Acholeplasma oculi [FUZK]
2581
2657
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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