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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180705 (33 seq.)
>W1711361075
MDKE01000027
Gammaproteobacteria
Oceanisphaera psychrotolerans [MDKE]
31527
31611
+
Tyr
GTA
[ENA]
¡û
>W1711361080
MDKE01000033
Gammaproteobacteria
Oceanisphaera psychrotolerans [MDKE]
185336
185420
+
Tyr
GTA
[ENA]
¡û
>C171038395
CP015411
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4054249 [CP015411, CP015412]
3559678
3559762
+
Tyr
GTA
-
¡û
>C171038522
CP015413
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S40542 [CP015413, CP015414]
3557028
3557112
+
Tyr
GTA
-
¡û
>C171038649
CP015415
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4054 [CP015415, CP015416]
3557032
3557116
+
Tyr
GTA
-
¡û
>W131180119
ARMW01000028
Gammaproteobacteria
Oceanimonas smirnovii ATCC BAA-899 [ARMW]
174836
174752
-
Tyr
GTA
[ENA]
¡û
>W131180120
ARMW01000028
Gammaproteobacteria
Oceanimonas smirnovii ATCC BAA-899 [ARMW]
174697
174613
-
Tyr
GTA
[ENA]
¡û
>WENV182588280
OJHR01000021
[OJHR] seawater metagenome; Sea water
13644
13560
-
Tyr
GTA
[ENA]
¢þ
>WENV182589629
OJIE01000906
[OJIE] seawater metagenome; Sea water
475
391
-
Tyr
GTA
[ENA]
¢þ
>WENV170014356
AYRE01006045
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
246
162
-
Tyr
GTA
[ENA]
¢þ
>WENV170015993
AZIJ01006494
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
701
785
+
Tyr
GTA
[ENA]
¢þ
>WENV170016090
AZIJ01012401
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
644
560
-
Tyr
GTA
[ENA]
¢þ
>W1910784558
MPZM01000017
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
35278
35194
-
Tyr
GTA
[ENA]
¡û
>W1910784565
MPZM01000023
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
462
546
+
Tyr
GTA
[ENA]
¡û
>W1910784566
MPZM01000023
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
663
747
+
Tyr
GTA
[ENA]
¡û
>W1910852592
NBIM01000001
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
1587112
1587196
+
Tyr
GTA
[ENA]
¡û
>W1910852593
NBIM01000001
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
1587251
1587335
+
Tyr
GTA
[ENA]
¡û
>W1910930957
NISX01000033
Gammaproteobacteria
Lacimicrobium alkaliphilum X13M-12 [NISX]
599
515
-
Tyr
GTA
[ENA]
¡û
>W1911174137
NQJF01000002
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
259951
259867
-
Tyr
GTA
[ENA]
¡û
>W1911174138
NQJF01000002
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
259813
259729
-
Tyr
GTA
[ENA]
¡û
>W1810390221
PXYH01000012
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
71630
71546
-
Tyr
GTA
[ENA]
¡û
>W1810471852
QAGM01000006
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
132425
132509
+
Tyr
GTA
[ENA]
¡û
>W1810471853
QAGM01000006
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
132564
132648
+
Tyr
GTA
[ENA]
¡û
>W1810533059
QCZE01000001
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
2052394
2052478
+
Tyr
GTA
[ENA]
¡û
>W1810533060
QCZE01000001
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
2052541
2052625
+
Tyr
GTA
[ENA]
¡û
>W1810533099
QCZE01000007
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
69208
69124
-
Tyr
GTA
[ENA]
¡û
>C121007312
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
783392
783476
+
Tyr
GTA
[Ensembl]
¡û
>C121007346
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
2971749
2971833
+
Tyr
GTA
[Ensembl]
¡û
>C121007347
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
2971889
2971973
+
Tyr
GTA
[Ensembl]
¡û
>W1610025184
AUXU01000099
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4047-1 [AUXU]
7538
7454
-
Tyr
GTA
[ENA]
¡û
>W1610025381
AUXW01000149
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4054 [AUXW]
7608
7524
-
Tyr
GTA
[ENA]
¡û
>W1710021426
AUXU01000099
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4047-1 [AUXU]
7538
7454
-
Tyr
GTA
[ENA]
¡û
>W1710021623
AUXW01000149
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4054 [AUXW]
7608
7524
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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