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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180707 (49 seq.)
>W1710859956
LMCM01000009
Actinomycetota
Phycicoccus sp. Root101 [LMCM]
349380
349456
+
Pro
TGG
[ENA]
¡û
>W1710865221
LMGM01000002
Actinomycetota
Phycicoccus sp. Root563 [LMGM]
367426
367502
+
Pro
TGG
[ENA]
¡û
>W1710880084
LMSC01000009
Actinomycetota
Phycicoccus sp. Soil748 [LMSC]
352002
352076
+
Pro
TGG
[ENA]
¡û
>W1710880220
LMSE01000002
Actinomycetota
Tetrasphaera sp. Soil756 [LMSE]
621522
621448
-
Pro
TGG
[ENA]
¡û
>W1710996476
LQBL01000028
Actinomycetota
Serinicoccus chungangensis [LQBL]
703588
703512
-
Pro
TGG
[ENA]
¡û
>W1711021435
LQZG01000002
Actinomycetota
Janibacter melonis [LQZG]
657306
657382
+
Pro
TGG
[ENA]
¡û
>W1711138008
LVCF01000007
Actinomycetota
Branchiibius sp. NY16-3462-2 [LVCF]
87697
87621
-
Pro
TGG
[ENA]
¡û
>W1711187476
LWPN01000030
Actinomycetota
Kytococcus sp. HMSC28H12 [LWPN]
1525
1449
-
Pro
TGG
[ENA]
¡û
>W1711491959
MKJZ01000037
Actinomycetota
Serinicoccus sp. CUA-874 [MKJZ]
182353
182277
-
Pro
TGG
[ENA]
¡û
>W1711491999
MKKA01000055
Actinomycetota
Ornithinimicrobium sp. CNJ-824 [MKKA]
41191
41267
+
Pro
TGG
[ENA]
¡û
>W1711492222
MKKF01000015
Actinomycetota
Serinicoccus sp. CNJ-927 [MKKF]
11739
11663
-
Pro
TGG
[ENA]
¡û
>W1711793227
MWLL01000125
Actinomycetota
Kineosporia sp. R_H_3 [MWLL]
9266
9342
+
Pro
TGG
[ENA]
¡û
>W1711793304
MWLN01000060
Actinomycetota
Kineosporia sp. A_224 A 224 [MWLN]
6559
6483
-
Pro
TGG
[ENA]
¡û
>C171034687
CP014989
Actinomycetota
Serinicoccus hydrothermalis JLT9 [CP014989]
1235796
1235720
-
Pro
TGG
-
¡û
>W131161633
AQXW01000004
Actinomycetota
Demetria terragena DSM 11295 [AQXW]
830264
830188
-
Pro
TGG
[ENA]
¡û
>W131217054
ATWJ01000015
Actinomycetota
Ornithinimicrobium pekingense DSM 21552 [ATWJ]
42969
43045
+
Pro
TGG
[ENA]
¡û
>W131217164
ATWM01000003
Actinomycetota
Serinicoccus marinus DSM 15273 [ATWM]
143724
143648
-
Pro
TGG
[ENA]
¡û
>WENV180690230
OCZS010000940
[OCZS] soil metagenome; soil
1566
1492
-
Pro
TGG
[ENA]
¢þ
>WENV181166275
OEIU01000030
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
46216
46290
+
Pro
TGG
[ENA]
¢þ
>W141242983
CAJB01000010
Actinomycetota
Tetrasphaera japonica T1-X7 [CAJB]
14796
14720
-
Pro
TGG
[ENA]
¡û
>W141243061
CAJC01000181
Actinomycetota
Tetrasphaera jenkinsii Ben 74 [CAJC]
20620
20544
-
Pro
TGG
[ENA]
¡û
>WENV170011005
APMI01038993
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1539
1463
-
Pro
TGG
[ENA]
¢þ
>WENV170011365
APMI01061045
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
365
439
+
Pro
TGG
[ENA]
¢þ
>WENV170979638
MTKZ01099996
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
992
1065
+
Pro
TGG
[ENA]
¢þ
>C181197182
CP031229
Actinomycetota
Ornithinimicrobium avium AMA3305 [CP031229]
1560102
1560026
-
Pro
TGG
-
¡û
>C191150901
CP036403
Actinomycetota
Ornithinimicrobium sp. HY006 [CP036403]
1004694
1004768
+
Pro
TGG
-
¡û
>C191158369
CP038213
Actinomycetota
Ornithinimicrobium flavum CPCC 203535 [CP038213]
914866
914942
+
Pro
TGG
-
¡û
>C191183662
CP040887
Actinomycetota
Serinicoccus chungangensis CCUG 59777 [CP040887]
805307
805383
+
Pro
TGG
-
¡û
>W09109329
ABUD01000023
Actinomycetota
Kytococcus sedentarius DSM 20547 [ABUD]
1796
1720
-
Pro
TGG
[ENA]
¡û
>W141766742
JOEE01000003
Actinomycetota
Phycicoccus jejuensis [JOEE]
128076
128150
+
Pro
TGG
[ENA]
¡û
>W1911495833
OBQK01000001
Actinomycetota
Ornithinimicrobium cerasi USBA17B2 [OBQK]
772766
772690
-
Pro
TGG
[ENA]
¡û
>W1911817409
QZMN01000002
Actinomycetota
Ornithinimicrobium cerasi CPCC 203383 [QZMN]
21130
21054
-
Pro
TGG
[ENA]
¡û
>W1810173604
PJNE01000001
Actinomycetota
Phycicoccus duodecadis DSM 12806 [PJNE]
3089095
3089021
-
Pro
TGG
[ENA]
¡û
>W1810189373
PKIZ01000015
Actinomycetota
Kytococcus schroeteri UMB1298 [PKIZ]
11008
11083
+
Pro
TGG
[ENA]
¡û
>W1810535061
QDDJ01000018
Actinomycetota
Ornithinimicrobium cavernae KCTC 49018 [QDDJ]
40214
40139
-
Pro
TGG
[ENA]
¡û
>W1810594910
QGDN01000001
Actinomycetota
Branchiibius hedensis DSM 22951 [QGDN]
685976
686052
+
Pro
TGG
[ENA]
¡û
>W1810861651
QTUA01000001
Actinomycetota
Calidifontibacter indicus DSM 22967 [QTUA]
2886297
2886371
+
Pro
TGG
[ENA]
¡û
>C151077140
CP011112
Actinomycetota
Luteipulveratus mongoliensis MN07-A0370 [CP011112]
3894701
3894627
-
Pro
TGG
-
¡û
>C10108042
CP001686
Actinomycetota
Kytococcus sedentarius DSM 20547 [CP001686]
925261
925337
+
Pro
TGG
[Ensembl]
¡û
>W11177032
AFYF01000080
Actinomycetota
Serinicoccus profundi MCCC 1A05965 [AFYF]
32579
32503
-
Pro
TGG
[ENA]
¡û
>W1610068243
BCRE01000043
Actinomycetota
Kribbia dieselivorans NBRC 106261 [BCRE]
65600
65524
-
Pro
TGG
[ENA]
¡û
>W1610722302
LMCM01000009
Actinomycetota
Phycicoccus sp. Root101 [LMCM]
349380
349456
+
Pro
TGG
[ENA]
¡û
>W1610727567
LMGM01000002
Actinomycetota
Phycicoccus sp. Root563 [LMGM]
367426
367502
+
Pro
TGG
[ENA]
¡û
>W1610742430
LMSC01000009
Actinomycetota
Phycicoccus sp. Soil748 [LMSC]
352002
352076
+
Pro
TGG
[ENA]
¡û
>W1610742566
LMSE01000002
Actinomycetota
Tetrasphaera sp. Soil756 [LMSE]
621522
621448
-
Pro
TGG
[ENA]
¡û
>W1610851133
LQBL01000028
Actinomycetota
Serinicoccus chungangensis [LQBL]
703588
703512
-
Pro
TGG
[ENA]
¡û
>W1610869723
LQZG01000002
Actinomycetota
Janibacter melonis [LQZG]
657306
657382
+
Pro
TGG
[ENA]
¡û
>W1610949094
LVCF01000007
Actinomycetota
Branchiibius sp. NY16-3462-2 [LVCF]
87697
87621
-
Pro
TGG
[ENA]
¡û
>W1710065616
BCRE01000043
Actinomycetota
Kribbia dieselivorans NBRC 106261 [BCRE]
65600
65524
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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